ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd19i08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY106150.1| Zea mays PCO099943 mRNA sequence 234 2e-58
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 212 9e-52
3dbj|AP006060.3| Oryza sativa (japonica cultivar-group) genomic D... 212 9e-52
4dbj|AP005885.3| Oryza sativa (japonica cultivar-group) genomic D... 212 9e-52
5dbj|AK065315.1| Oryza sativa (japonica cultivar-group) cDNA clon... 212 9e-52
6gb|AY111036.1| Zea mays CL1582_4 mRNA sequence 178 1e-41
7ref|XM_473556.1| Oryza sativa (japonica cultivar-group), predic... 149 1e-32
8emb|AL607001.4|OSJN00128 Oryza sativa genomic DNA, chromosome 4,... 149 1e-32
9dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 149 1e-32
10dbj|AK099906.1| Oryza sativa (japonica cultivar-group) cDNA clon... 149 1e-32
11dbj|AK069684.1| Oryza sativa (japonica cultivar-group) cDNA clon... 149 1e-32
12gb|AC109365.2| Oryza sativa (japonica cultivar-group) chromosome... 80 8e-12
13dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 80 8e-12
14dbj|AK121243.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 8e-12
15gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 80 8e-12
16ref|NM_197301.1| Oryza sativa (japonica cultivar-group) unknown ... 72 2e-09
17gb|AC087192.14| Oryza sativa chromosome 10 BAC OSJNBa0005K07 gen... 72 2e-09
18dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
19gb|AY987028.1| Triticum aestivum dehydration-induced protein mRN... 72 2e-09
20dbj|AK100601.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 2e-09
21dbj|AK073237.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 2e-09
22gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 72 2e-09
23ref|NM_185478.1| Oryza sativa (japonica cultivar-group), predic... 56 1e-04
24ref|NM_197407.1| Oryza sativa (japonica cultivar-group) hypothet... 56 1e-04
25gb|AC079029.11| Oryza sativa chromosome 10 BAC OSJNBb0028C01 gen... 56 1e-04
26dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
27dbj|AP002838.2| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
28dbj|AP000391.2| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
29gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete g... 46 0.12
30emb|AL603925.20| Mouse DNA sequence from clone RP23-175K24 on ch... 42 1.8
31gb|AC116644.4| Homo sapiens BAC clone RP11-678J5 from 4, complet... 42 1.8
32gb|AC093607.3| Homo sapiens BAC clone RP11-654J13 from 4, comple... 42 1.8
33dbj|AP005463.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
34dbj|AP004329.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
35emb|BX678774.7| Mouse DNA sequence from clone RP23-193A4 on chro... 42 1.8
36emb|AL672229.12| Mouse DNA sequence from clone RP23-335A6 on chr... 42 1.8
37gb|AC168217.2| Mus musculus BAC clone RP24-498P8 from chromosome... 40 7.2
38ref|XM_610350.2| PREDICTED: Bos taurus similar to X-linked neuro... 40 7.2
39emb|CT009492.5| M.truncatula DNA sequence from clone MTH2-93A21 ... 40 7.2
40gb|AC147158.3| Pan troglodytes BAC clone CH251-137M10 from Y, co... 40 7.2
41gb|AC142354.3| Pan troglodytes BAC clone RP43-21M11 from Y, comp... 40 7.2
42dbj|BS000641.4| Pan troglodytes chromosome Y clone: PTB-094I22, ... 40 7.2
43gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 7.2
44gb|U40712.1|OCU40712 Oryctolagus cuniculus telokin gene, 5' region 40 7.2
45dbj|BS000147.1| Pan troglodytes chromosome 22 clone:PTB-072G02, ... 40 7.2
46dbj|BS000073.1| Pan troglodytes chromosome 22 clone:RP43-040P11,... 40 7.2
47dbj|BS000072.1| Pan troglodytes chromosome 22 clone:RP43-156P08,... 40 7.2
48gb|AF241725.1|AF241725 Homo sapiens 21 map 21q21 clone B780G18, ... 40 7.2
49dbj|BS000573.1| Pan troglodytes chromosome Y clone:RP43-021M11, ... 40 7.2
50gb|AF236874.1|AF236874 Homo sapiens chromosome 21 map 21q21, BAC... 40 7.2
51emb|AL163227.2|HS21C027 Homo sapiens chromosome 21 segment HS21C027 40 7.2
52gb|AC137678.11| Mus musculus chromosome 9, clone RP24-484G16, co... 40 7.2
53dbj|AP000475.4| Homo sapiens genomic DNA, chromosome 21 clone:RP... 40 7.2
54dbj|AP006638.1| Lotus japonicus genomic DNA, chromosome 3, clone... 40 7.2
55emb|AL121578.1|HSXKSRPXR Homo sapiens chromosome X sequence from... 40 7.2
56gb|M76234.1|RABMYLCTEK Oryctolagus cuniculus telokin gene, exon 2 40 7.2 
>gb|AY106150.1| Zea mays PCO099943 mRNA sequence
          Length = 1572

 Score =  234 bits (118), Expect = 2e-58
 Identities = 166/182 (91%)
 Strand = Plus / Minus

                                                                        
Query: 345  gtccagtatgtcttcacaacaaggaggagcttctcccggacgagcggaccgtcttcgtgg 404
            |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| 
Sbjct: 1248 gtccagtatgtcttcacagcaaggaggagcttctcccggacgagcggaccatcttcgtga 1189

                                                                        
Query: 405  tccacgatctggctattccatctcatcccgtccgcgacgctctttatcttcactagcagg 464
            |||||||||||||||||||||||||||||||||| || ||||||||||||||||| || |
Sbjct: 1188 tccacgatctggctattccatctcatcccgtccgtgatgctctttatcttcactaacatg 1129

                                                                        
Query: 465  tccacatcgtccctgatgatcaccgtgccctccggcctcaggatcctgtccatctccagc 524
            ||||| || || |||||||| ||||||||||| |||||||| || |||||||| || |||
Sbjct: 1128 tccacgtcatctctgatgatgaccgtgccctctggcctcagaattctgtccatttcgagc 1069

              
Query: 525  ag 526
            ||
Sbjct: 1068 ag 1067
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  212 bits (107), Expect = 9e-52
 Identities = 167/187 (89%)
 Strand = Plus / Plus

                                                                            
Query: 344      tgtccagtatgtcttcacaacaaggaggagcttctcccggacgagcggaccgtcttcgtg 403
                ||||||||| ||||| || || ||||||| |||||||||||||||||| || ||||| ||
Sbjct: 27549739 tgtccagtacgtcttgacgaccaggaggatcttctcccggacgagcgggccatcttcatg 27549798

                                                                            
Query: 404      gtccacgatctggctattccatctcatcccgtccgcgacgctctttatcttcactagcag 463
                ||| ||||||||||| | ||| ||||||||||||||| ||||||| | |||||| |||| 
Sbjct: 27549799 gtcgacgatctggctgtcccacctcatcccgtccgcggcgctcttcaccttcaccagcat 27549858

                                                                            
Query: 464      gtccacatcgtccctgatgatcaccgtgccctccggcctcaggatcctgtccatctccag 523
                |||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 27549859 gtccacgtcgtctctgatgatcaccgtgccctcgggcctcaggatcctgtccatctccag 27549918

                       
Query: 524      caggatg 530
                |||||||
Sbjct: 27549919 caggatg 27549925
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>dbj|AP006060.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0135D07
          Length = 170587

 Score =  212 bits (107), Expect = 9e-52
 Identities = 167/187 (89%)
 Strand = Plus / Plus

                                                                         
Query: 344   tgtccagtatgtcttcacaacaaggaggagcttctcccggacgagcggaccgtcttcgtg 403
             ||||||||| ||||| || || ||||||| |||||||||||||||||| || ||||| ||
Sbjct: 29408 tgtccagtacgtcttgacgaccaggaggatcttctcccggacgagcgggccatcttcatg 29467

                                                                         
Query: 404   gtccacgatctggctattccatctcatcccgtccgcgacgctctttatcttcactagcag 463
             ||| ||||||||||| | ||| ||||||||||||||| ||||||| | |||||| |||| 
Sbjct: 29468 gtcgacgatctggctgtcccacctcatcccgtccgcggcgctcttcaccttcaccagcat 29527

                                                                         
Query: 464   gtccacatcgtccctgatgatcaccgtgccctccggcctcaggatcctgtccatctccag 523
             |||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 29528 gtccacgtcgtctctgatgatcaccgtgccctcgggcctcaggatcctgtccatctccag 29587

                    
Query: 524   caggatg 530
             |||||||
Sbjct: 29588 caggatg 29594
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>dbj|AP005885.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0657H12
          Length = 142688

 Score =  212 bits (107), Expect = 9e-52
 Identities = 167/187 (89%)
 Strand = Plus / Plus

                                                                          
Query: 344    tgtccagtatgtcttcacaacaaggaggagcttctcccggacgagcggaccgtcttcgtg 403
              ||||||||| ||||| || || ||||||| |||||||||||||||||| || ||||| ||
Sbjct: 141461 tgtccagtacgtcttgacgaccaggaggatcttctcccggacgagcgggccatcttcatg 141520

                                                                          
Query: 404    gtccacgatctggctattccatctcatcccgtccgcgacgctctttatcttcactagcag 463
              ||| ||||||||||| | ||| ||||||||||||||| ||||||| | |||||| |||| 
Sbjct: 141521 gtcgacgatctggctgtcccacctcatcccgtccgcggcgctcttcaccttcaccagcat 141580

                                                                          
Query: 464    gtccacatcgtccctgatgatcaccgtgccctccggcctcaggatcctgtccatctccag 523
              |||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 141581 gtccacgtcgtctctgatgatcaccgtgccctcgggcctcaggatcctgtccatctccag 141640

                     
Query: 524    caggatg 530
              |||||||
Sbjct: 141641 caggatg 141647
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>dbj|AK065315.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002P05, full
            insert sequence
          Length = 2289

 Score =  212 bits (107), Expect = 9e-52
 Identities = 167/187 (89%)
 Strand = Plus / Minus

                                                                        
Query: 344  tgtccagtatgtcttcacaacaaggaggagcttctcccggacgagcggaccgtcttcgtg 403
            ||||||||| ||||| || || ||||||| |||||||||||||||||| || ||||| ||
Sbjct: 2059 tgtccagtacgtcttgacgaccaggaggatcttctcccggacgagcgggccatcttcatg 2000

                                                                        
Query: 404  gtccacgatctggctattccatctcatcccgtccgcgacgctctttatcttcactagcag 463
            ||| ||||||||||| | ||| ||||||||||||||| ||||||| | |||||| |||| 
Sbjct: 1999 gtcgacgatctggctgtcccacctcatcccgtccgcggcgctcttcaccttcaccagcat 1940

                                                                        
Query: 464  gtccacatcgtccctgatgatcaccgtgccctccggcctcaggatcctgtccatctccag 523
            |||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1939 gtccacgtcgtctctgatgatcaccgtgccctcgggcctcaggatcctgtccatctccag 1880

                   
Query: 524  caggatg 530
            |||||||
Sbjct: 1879 caggatg 1873
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>gb|AY111036.1| Zea mays CL1582_4 mRNA sequence
          Length = 781

 Score =  178 bits (90), Expect = 1e-41
 Identities = 162/186 (87%)
 Strand = Plus / Plus

                                                                       
Query: 345 gtccagtatgtcttcacaacaaggaggagcttctcccggacgagcggaccgtcttcgtgg 404
           |||||||| ||||| || || ||||||| |||||||| ||||||||| ||||||||||||
Sbjct: 408 gtccagtacgtcttgacgaccaggaggatcttctccctgacgagcgggccgtcttcgtgg 467

                                                                       
Query: 405 tccacgatctggctattccatctcatcccgtccgcgacgctctttatcttcactagcagg 464
           || ||||||||||| | ||| |||||||||||||| | |||||| | |||||| |||| |
Sbjct: 468 tcgacgatctggctctcccacctcatcccgtccgccaggctcttgaccttcaccagcatg 527

                                                                       
Query: 465 tccacatcgtccctgatgatcaccgtgccctccggcctcaggatcctgtccatctccagc 524
           ||||| || ||||||| |||||||||||||   |||||||||||||||||||||||||| 
Sbjct: 528 tccacgtcttccctgacgatcaccgtgcccctgggcctcaggatcctgtccatctccagg 587

                 
Query: 525 aggatg 530
           ||||||
Sbjct: 588 aggatg 593
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>ref|XM_473556.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1941

 Score =  149 bits (75), Expect = 1e-32
 Identities = 162/191 (84%)
 Strand = Plus / Minus

                                                                        
Query: 336  tccccaagtgtccagtatgtcttcacaacaaggaggagcttctcccggacgagcggaccg 395
            ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| || 
Sbjct: 1928 tccccgagtgtccagtatgtctttacaacaaggaggagcttctcccggacgagcgggcca 1869

                                                                        
Query: 396  tcttcgtggtccacgatctggctattccatctcatcccgtccgcgacgctctttatcttc 455
            |||||||| || ||||| ||||| ||||||||||| ||||| |  | ||||||||| |||
Sbjct: 1868 tcttcgtgatcaacgatttggctgttccatctcataccgtcggtaatgctctttattttc 1809

                                                                        
Query: 456  actagcaggtccacatcgtccctgatgatcaccgtgccctccggcctcaggatcctgtcc 515
            || | ||  || ||||| || || || ||||| || ||||| |||||||| || ||||||
Sbjct: 1808 accaacatatcaacatcatctcttataatcactgtaccctcaggcctcagtattctgtcc 1749

                       
Query: 516  atctccagcag 526
            || ||||||||
Sbjct: 1748 atttccagcag 1738
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>emb|AL607001.4|OSJN00128 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088I22,
             complete sequence
          Length = 164572

 Score =  149 bits (75), Expect = 1e-32
 Identities = 162/191 (84%)
 Strand = Plus / Minus

                                                                         
Query: 336   tccccaagtgtccagtatgtcttcacaacaaggaggagcttctcccggacgagcggaccg 395
             ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| || 
Sbjct: 93483 tccccgagtgtccagtatgtctttacaacaaggaggagcttctcccggacgagcgggcca 93424

                                                                         
Query: 396   tcttcgtggtccacgatctggctattccatctcatcccgtccgcgacgctctttatcttc 455
             |||||||| || ||||| ||||| ||||||||||| ||||| |  | ||||||||| |||
Sbjct: 93423 tcttcgtgatcaacgatttggctgttccatctcataccgtcggtaatgctctttattttc 93364

                                                                         
Query: 456   actagcaggtccacatcgtccctgatgatcaccgtgccctccggcctcaggatcctgtcc 515
             || | ||  || ||||| || || || ||||| || ||||| |||||||| || ||||||
Sbjct: 93363 accaacatatcaacatcatctcttataatcactgtaccctcaggcctcagtattctgtcc 93304

                        
Query: 516   atctccagcag 526
             || ||||||||
Sbjct: 93303 atttccagcag 93293
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  149 bits (75), Expect = 1e-32
 Identities = 162/191 (84%)
 Strand = Plus / Plus

                                                                            
Query: 336      tccccaagtgtccagtatgtcttcacaacaaggaggagcttctcccggacgagcggaccg 395
                ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| || 
Sbjct: 28697475 tccccgagtgtccagtatgtctttacaacaaggaggagcttctcccggacgagcgggcca 28697534

                                                                            
Query: 396      tcttcgtggtccacgatctggctattccatctcatcccgtccgcgacgctctttatcttc 455
                |||||||| || ||||| ||||| ||||||||||| ||||| |  | ||||||||| |||
Sbjct: 28697535 tcttcgtgatcaacgatttggctgttccatctcataccgtcggtaatgctctttattttc 28697594

                                                                            
Query: 456      actagcaggtccacatcgtccctgatgatcaccgtgccctccggcctcaggatcctgtcc 515
                || | ||  || ||||| || || || ||||| || ||||| |||||||| || ||||||
Sbjct: 28697595 accaacatatcaacatcatctcttataatcactgtaccctcaggcctcagtattctgtcc 28697654

                           
Query: 516      atctccagcag 526
                || ||||||||
Sbjct: 28697655 atttccagcag 28697665
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>dbj|AK099906.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116A04, full
            insert sequence
          Length = 2060

 Score =  149 bits (75), Expect = 1e-32
 Identities = 162/191 (84%)
 Strand = Plus / Minus

                                                                        
Query: 336  tccccaagtgtccagtatgtcttcacaacaaggaggagcttctcccggacgagcggaccg 395
            ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| || 
Sbjct: 2014 tccccgagtgtccagtatgtctttacaacaaggaggagcttctcccggacgagcgggcca 1955

                                                                        
Query: 396  tcttcgtggtccacgatctggctattccatctcatcccgtccgcgacgctctttatcttc 455
            |||||||| || ||||| ||||| ||||||||||| ||||| |  | ||||||||| |||
Sbjct: 1954 tcttcgtgatcaacgatttggctgttccatctcataccgtcggtaatgctctttattttc 1895

                                                                        
Query: 456  actagcaggtccacatcgtccctgatgatcaccgtgccctccggcctcaggatcctgtcc 515
            || | ||  || ||||| || || || ||||| || ||||| |||||||| || ||||||
Sbjct: 1894 accatcatatcaacatcatctcttataatcactgtaccctcaggcctcagtattctgtcc 1835

                       
Query: 516  atctccagcag 526
            || ||||||||
Sbjct: 1834 atttccagcag 1824
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>dbj|AK069684.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031N01, full
            insert sequence
          Length = 3063

 Score =  149 bits (75), Expect = 1e-32
 Identities = 162/191 (84%)
 Strand = Plus / Minus

                                                                        
Query: 336  tccccaagtgtccagtatgtcttcacaacaaggaggagcttctcccggacgagcggaccg 395
            ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| || 
Sbjct: 2014 tccccgagtgtccagtatgtctttacaacaaggaggagcttctcccggacgagcgggcca 1955

                                                                        
Query: 396  tcttcgtggtccacgatctggctattccatctcatcccgtccgcgacgctctttatcttc 455
            |||||||| || ||||| ||||| ||||||||||| ||||| |  | ||||||||| |||
Sbjct: 1954 tcttcgtgatcaacgatttggctgttccatctcataccgtcggtaatgctctttattttc 1895

                                                                        
Query: 456  actagcaggtccacatcgtccctgatgatcaccgtgccctccggcctcaggatcctgtcc 515
            || | ||  || ||||| || || || ||||| || ||||| |||||||| || ||||||
Sbjct: 1894 accaacatatcaacatcatctcttataatcactgtaccctcaggcctcagtattctgtcc 1835

                       
Query: 516  atctccagcag 526
            || ||||||||
Sbjct: 1834 atttccagcag 1824
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>gb|AC109365.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0034P08, complete sequence
          Length = 173088

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 55/60 (91%)
 Strand = Plus / Plus

                                                                         
Query: 471   tcgtccctgatgatcaccgtgccctccggcctcaggatcctgtccatctccagcaggatg 530
             ||||||| || |||||||||||||||||||| ||||||||  ||||||||||||||||||
Sbjct: 62993 tcgtcccggaggatcaccgtgccctccggccgcaggatccgatccatctccagcaggatg 63052
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 55/60 (91%)
 Strand = Plus / Minus

                                                                            
Query: 471      tcgtccctgatgatcaccgtgccctccggcctcaggatcctgtccatctccagcaggatg 530
                ||||||| || |||||||||||||||||||| ||||||||  ||||||||||||||||||
Sbjct: 22278305 tcgtcccggaggatcaccgtgccctccggccgcaggatccgatccatctccagcaggatg 22278246
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>dbj|AK121243.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099B06, full
            insert sequence
          Length = 2310

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 55/60 (91%)
 Strand = Plus / Minus

                                                                        
Query: 471  tcgtccctgatgatcaccgtgccctccggcctcaggatcctgtccatctccagcaggatg 530
            ||||||| || |||||||||||||||||||| ||||||||  ||||||||||||||||||
Sbjct: 1869 tcgtcccggaggatcaccgtgccctccggccgcaggatccgatccatctccagcaggatg 1810
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 55/60 (91%)
 Strand = Plus / Minus

                                                                            
Query: 471      tcgtccctgatgatcaccgtgccctccggcctcaggatcctgtccatctccagcaggatg 530
                ||||||| || |||||||||||||||||||| ||||||||  ||||||||||||||||||
Sbjct: 22588216 tcgtcccggaggatcaccgtgccctccggccgcaggatccgatccatctccagcaggatg 22588157
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>ref|NM_197301.1| Oryza sativa (japonica cultivar-group) unknown protein
            (OSJNBa0005K07.2), mRNA
          Length = 2259

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 42/44 (95%)
 Strand = Plus / Minus

                                                        
Query: 479  gatgatcaccgtgccctccggcctcaggatcctgtccatctcca 522
            ||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 1901 gatgatcgccgtgccctcgggcctcaggatcctgtccatctcca 1858
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>gb|AC087192.14| Oryza sativa chromosome 10 BAC OSJNBa0005K07 genomic sequence, complete
             sequence
          Length = 113606

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 42/44 (95%)
 Strand = Plus / Minus

                                                         
Query: 479   gatgatcaccgtgccctccggcctcaggatcctgtccatctcca 522
             ||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 58951 gatgatcgccgtgccctcgggcctcaggatcctgtccatctcca 58908
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 42/44 (95%)
 Strand = Plus / Minus

                                                            
Query: 479      gatgatcaccgtgccctccggcctcaggatcctgtccatctcca 522
                ||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 19106380 gatgatcgccgtgccctcgggcctcaggatcctgtccatctcca 19106337



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                                
Query: 498      ggcctcaggatcctgtccatctccagcaggat 529
                |||| |||||||||||||||||||||||||||
Sbjct: 19692169 ggccgcaggatcctgtccatctccagcaggat 19692200
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>gb|AY987028.1| Triticum aestivum dehydration-induced protein mRNA, complete cds
          Length = 1075

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                               
Query: 479 gatgatcaccgtgccctccggcctcaggatcctgtccatctccagcaggatg 530
           ||||||| |||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct: 580 gatgatcgccgtgccctcgggcctcagtatcctgtccatctccaggaggatg 529
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>dbj|AK100601.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023107D05, full
            insert sequence
          Length = 2722

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 42/44 (95%)
 Strand = Plus / Minus

                                                        
Query: 479  gatgatcaccgtgccctccggcctcaggatcctgtccatctcca 522
            ||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 2082 gatgatcgccgtgccctcgggcctcaggatcctgtccatctcca 2039
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>dbj|AK073237.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033005B11, full
            insert sequence
          Length = 2538

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 42/44 (95%)
 Strand = Plus / Minus

                                                        
Query: 479  gatgatcaccgtgccctccggcctcaggatcctgtccatctcca 522
            ||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 1985 gatgatcgccgtgccctcgggcctcaggatcctgtccatctcca 1942
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 42/44 (95%)
 Strand = Plus / Minus

                                                            
Query: 479      gatgatcaccgtgccctccggcctcaggatcctgtccatctcca 522
                ||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 19117656 gatgatcgccgtgccctcgggcctcaggatcctgtccatctcca 19117613



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                                
Query: 498      ggcctcaggatcctgtccatctccagcaggat 529
                |||| |||||||||||||||||||||||||||
Sbjct: 19703445 ggccgcaggatcctgtccatctccagcaggat 19703476
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>ref|NM_185478.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1857

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 85/104 (81%)
 Strand = Plus / Minus

                                                                        
Query: 422  ccatctcatcccgtccgcgacgctctttatcttcactagcaggtccacatcgtccctgat 481
            ||||||||||||||| |||| | |||| |||||||| || |  || |||||||| |||| 
Sbjct: 1773 ccatctcatcccgtctgcgatgttcttgatcttcaccaggacatcaacatcgtctctgaa 1714

                                                        
Query: 482  gatcaccgtgccctccggcctcaggatcctgtccatctccagca 525
             || |||||||| || |||||||| |  | ||||||||||||||
Sbjct: 1713 tattaccgtgccttctggcctcagcacacggtccatctccagca 1670
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>ref|NM_197407.1| Oryza sativa (japonica cultivar-group) hypothetical protein
            (OSJNBb0028C01.40), mRNA
          Length = 1701

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                            
Query: 498  ggcctcaggatcctgtccatctccagcaggat 529
            |||| |||||||||||||||||||||||||||
Sbjct: 1517 ggccgcaggatcctgtccatctccagcaggat 1486
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>gb|AC079029.11| Oryza sativa chromosome 10 BAC OSJNBb0028C01 genomic sequence, complete
             sequence
          Length = 137366

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                             
Query: 498   ggcctcaggatcctgtccatctccagcaggat 529
             |||| |||||||||||||||||||||||||||
Sbjct: 85343 ggccgcaggatcctgtccatctccagcaggat 85312
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 85/104 (81%)
 Strand = Plus / Minus

                                                                           
Query: 422     ccatctcatcccgtccgcgacgctctttatcttcactagcaggtccacatcgtccctgat 481
               ||||||||||||||| |||| | |||| |||||||| || |  || |||||||| |||| 
Sbjct: 1484289 ccatctcatcccgtctgcgatgttcttgatcttcaccaggacatcaacatcgtctctgaa 1484230

                                                           
Query: 482     gatcaccgtgccctccggcctcaggatcctgtccatctccagca 525
                || |||||||| || |||||||| |  | ||||||||||||||
Sbjct: 1484229 tattaccgtgccttctggcctcagcacacggtccatctccagca 1484186



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                 
Query: 490      tgccctccggcctcaggatcctgtccatctcca 522
                ||||| ||||||||| ||||||||||| |||||
Sbjct: 29670515 tgccccccggcctcacgatcctgtccacctcca 29670483
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>dbj|AP002838.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0038F22
          Length = 101666

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 85/104 (81%)
 Strand = Plus / Minus

                                                                         
Query: 422   ccatctcatcccgtccgcgacgctctttatcttcactagcaggtccacatcgtccctgat 481
             ||||||||||||||| |||| | |||| |||||||| || |  || |||||||| |||| 
Sbjct: 91575 ccatctcatcccgtctgcgatgttcttgatcttcaccaggacatcaacatcgtctctgaa 91516

                                                         
Query: 482   gatcaccgtgccctccggcctcaggatcctgtccatctccagca 525
              || |||||||| || |||||||| |  | ||||||||||||||
Sbjct: 91515 tattaccgtgccttctggcctcagcacacggtccatctccagca 91472
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>dbj|AP000391.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0538C01
          Length = 155643

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 85/104 (81%)
 Strand = Plus / Minus

                                                                         
Query: 422   ccatctcatcccgtccgcgacgctctttatcttcactagcaggtccacatcgtccctgat 481
             ||||||||||||||| |||| | |||| |||||||| || |  || |||||||| |||| 
Sbjct: 13013 ccatctcatcccgtctgcgatgttcttgatcttcaccaggacatcaacatcgtctctgaa 12954

                                                         
Query: 482   gatcaccgtgccctccggcctcaggatcctgtccatctccagca 525
              || |||||||| || |||||||| |  | ||||||||||||||
Sbjct: 12953 tattaccgtgccttctggcctcagcacacggtccatctccagca 12910
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>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                          
Query: 77      acagcaagaaacataatgaaatctctg 103
               ||||||| |||||||||||||||||||
Sbjct: 2983165 acagcaaaaaacataatgaaatctctg 2983139
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>emb|AL603925.20| Mouse DNA sequence from clone RP23-175K24 on chromosome 11 Contains the
              gene for nuclear DNA binding protein C1d and a aldo-keto
              reductase family 1 member B3 (aldose reductase) (Akr1b3)
              pseudogene, complete sequence
          Length = 232869

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 478    tgatgatcaccgtgccctccg 498
              |||||||||||||||||||||
Sbjct: 118884 tgatgatcaccgtgccctccg 118904
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>gb|AC116644.4| Homo sapiens BAC clone RP11-678J5 from 4, complete sequence
          Length = 75455

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 81    caagaaacataatgaaatctc 101
             |||||||||||||||||||||
Sbjct: 34152 caagaaacataatgaaatctc 34132
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>gb|AC093607.3| Homo sapiens BAC clone RP11-654J13 from 4, complete sequence
          Length = 143993

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 140   tcaaaatctgtcatatacttg 160
             |||||||||||||||||||||
Sbjct: 43619 tcaaaatctgtcatatacttg 43599
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>dbj|AP005463.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0712G01
          Length = 87056

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 490   tgccctccggcctcaggatcctgtccatctcca 522
             ||||| ||||||||| ||||||||||| |||||
Sbjct: 43629 tgccccccggcctcacgatcctgtccacctcca 43597
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>dbj|AP004329.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OJ1663_H12
          Length = 125422

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 490    tgccctccggcctcaggatcctgtccatctcca 522
              ||||| ||||||||| ||||||||||| |||||
Sbjct: 114100 tgccccccggcctcacgatcctgtccacctcca 114068
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>emb|BX678774.7| Mouse DNA sequence from clone RP23-193A4 on chromosome 2, complete
             sequence
          Length = 123748

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 261   tgtgacatctgcccagtatct 281
             |||||||||||||||||||||
Sbjct: 26271 tgtgacatctgcccagtatct 26291
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>emb|AL672229.12| Mouse DNA sequence from clone RP23-335A6 on chromosome 17, complete
             sequence
          Length = 187977

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 114   ttggctggctggctgtccttcccat 138
             |||||||||||||||||||| ||||
Sbjct: 48113 ttggctggctggctgtcctttccat 48089
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>gb|AC168217.2| Mus musculus BAC clone RP24-498P8 from chromosome 9, complete sequence
          Length = 171426

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 114    ttggctggctggctgtcctt 133
              ||||||||||||||||||||
Sbjct: 154651 ttggctggctggctgtcctt 154632
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>ref|XM_610350.2| PREDICTED: Bos taurus similar to X-linked neuroligin 4 (LOC531847),
            mRNA
          Length = 3038

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 393  ccgtcttcgtggtccacgat 412
            ||||||||||||||||||||
Sbjct: 1022 ccgtcttcgtggtccacgat 1003
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>emb|CT009492.5| M.truncatula DNA sequence from clone MTH2-93A21 on chromosome 3,
             complete sequence
          Length = 122557

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 208   agcaagataaaacttcaaaa 227
             ||||||||||||||||||||
Sbjct: 66039 agcaagataaaacttcaaaa 66020
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>gb|AC147158.3| Pan troglodytes BAC clone CH251-137M10 from Y, complete sequence
          Length = 167138

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    aacataatgaaatctctgtc 105
             ||||||||||||||||||||
Sbjct: 47832 aacataatgaaatctctgtc 47813
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>gb|AC142354.3| Pan troglodytes BAC clone RP43-21M11 from Y, complete sequence
          Length = 163480

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 86     aacataatgaaatctctgtc 105
              ||||||||||||||||||||
Sbjct: 155852 aacataatgaaatctctgtc 155833
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>dbj|BS000641.4| Pan troglodytes chromosome Y clone: PTB-094I22, complete sequence
          Length = 190308

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 86    aacataatgaaatctctgtc 105
             ||||||||||||||||||||
Sbjct: 98334 aacataatgaaatctctgtc 98353
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 86       aacataatgaaatctctgtc 105
                ||||||||||||||||||||
Sbjct: 17308124 aacataatgaaatctctgtc 17308105
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>gb|U40712.1|OCU40712 Oryctolagus cuniculus telokin gene, 5' region
          Length = 3607

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 492  ccctccggcctcaggatcct 511
            ||||||||||||||||||||
Sbjct: 3223 ccctccggcctcaggatcct 3204
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>dbj|BS000147.1| Pan troglodytes chromosome 22 clone:PTB-072G02, map 22, complete
              sequences
          Length = 179346

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 283    tcaattttctcagtttctca 302
              ||||||||||||||||||||
Sbjct: 128801 tcaattttctcagtttctca 128782
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>dbj|BS000073.1| Pan troglodytes chromosome 22 clone:RP43-040P11, map 22, complete
             sequences
          Length = 148593

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 283   tcaattttctcagtttctca 302
             ||||||||||||||||||||
Sbjct: 21631 tcaattttctcagtttctca 21612
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>dbj|BS000072.1| Pan troglodytes chromosome 22 clone:RP43-156P08, map 22, complete
              sequences
          Length = 155118

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 283    tcaattttctcagtttctca 302
              ||||||||||||||||||||
Sbjct: 112865 tcaattttctcagtttctca 112846
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>gb|AF241725.1|AF241725 Homo sapiens 21 map 21q21 clone B780G18, complete sequence
          Length = 172663

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 283    tcaattttctcagtttctca 302
              ||||||||||||||||||||
Sbjct: 124082 tcaattttctcagtttctca 124063
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>dbj|BS000573.1| Pan troglodytes chromosome Y clone:RP43-021M11, complete sequences
          Length = 163477

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 86   aacataatgaaatctctgtc 105
            ||||||||||||||||||||
Sbjct: 7629 aacataatgaaatctctgtc 7648
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>gb|AF236874.1|AF236874 Homo sapiens chromosome 21 map 21q21, BAC B242B02, complete sequence
          Length = 157270

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 283   tcaattttctcagtttctca 302
             ||||||||||||||||||||
Sbjct: 45885 tcaattttctcagtttctca 45866
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>emb|AL163227.2|HS21C027 Homo sapiens chromosome 21 segment HS21C027
          Length = 340000

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 283    tcaattttctcagtttctca 302
              ||||||||||||||||||||
Sbjct: 191986 tcaattttctcagtttctca 191967
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>gb|AC137678.11| Mus musculus chromosome 9, clone RP24-484G16, complete sequence
          Length = 172337

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 114    ttggctggctggctgtcctt 133
              ||||||||||||||||||||
Sbjct: 133060 ttggctggctggctgtcctt 133079
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>dbj|AP000475.4| Homo sapiens genomic DNA, chromosome 21 clone:RP11-44J6, complete
            sequence
          Length = 160762

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 283  tcaattttctcagtttctca 302
            ||||||||||||||||||||
Sbjct: 6661 tcaattttctcagtttctca 6642
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>dbj|AP006638.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT47I16, TM0208c,
             complete sequence
          Length = 48081

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 277   tatctgtcaattttctcagt 296
             ||||||||||||||||||||
Sbjct: 11997 tatctgtcaattttctcagt 12016
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>emb|AL121578.1|HSXKSRPXR Homo sapiens chromosome X sequence from 12 cosmids, map Xp21.1 region
             DXS709-SRPX, complete sequence
          Length = 337101

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    gaaatctctgtctgccccat 113
             ||||||||||||||||||||
Sbjct: 85770 gaaatctctgtctgccccat 85789
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>gb|M76234.1|RABMYLCTEK Oryctolagus cuniculus telokin gene, exon 2
          Length = 961

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 492 ccctccggcctcaggatcct 511
           ||||||||||||||||||||
Sbjct: 215 ccctccggcctcaggatcct 196


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,383,657
Number of Sequences: 3902068
Number of extensions: 5383657
Number of successful extensions: 114168
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 113779
Number of HSP's gapped (non-prelim): 389
length of query: 532
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 509
effective length of database: 17,143,297,704
effective search space: 8725938531336
effective search space used: 8725938531336
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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