ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd19i06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF182197.1|AF182197 Hordeum vulgare RNase S-like protein precursor (rsh1) gene, complete cds Length = 3758 Score = 920 bits (464), Expect = 0.0 Identities = 478/482 (99%), Gaps = 2/482 (0%) Strand = Plus / Minus Query: 1 atatgcggtaccctcgggttacattattattatnt--atataacaacacgagcgagatga 58 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 3357 atatgcggtaccctcgggttacattattattatcatcatataacaacacgagcgagatga 3298 Query: 59 acatctgaaaaaaggaaagaacataattccatgcatatactagtacgtattaattattca 118 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3297 acatctgaaaaaaggaaagaacataattccatgcatatactagtacgtattaattattca 3238 Query: 119 ttggaacgcaacccacaagacgaggcctgatcggctaccaatctgcagctgtagctcagt 178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3237 ttggaacgcaacccacaagacgaggcctgatcggctaccaatctgcagctgtagctcagt 3178 Query: 179 atcccatggcggcgccggccatctcaaatgcttcggcaaaggacacggaggacgcggcct 238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3177 atcccatggcggcgccggccatctcaaatgcttcggcaaaggacacggaggacgcggcct 3118 Query: 239 gctttagcatccacttcttgaaggggtggaagaggatctcgtcggagcacgtgaacttct 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3117 gctttagcatccacttcttgaaggggtggaagaggatctcgtcggagcacgtgaacttct 3058 Query: 299 gcggtttcgggcactcgatgagcgttttggcgtcctcggccacgcagatgaagatctggt 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3057 gcggtttcgggcactcgatgagcgttttggcgtcctcggccacgcagatgaagatctggt 2998 Query: 359 acagctggaacttatcgaacggccctttgctacactggatcagcggcgccacaccggtgc 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2997 acagctggaacttatcgaacggccctttgctacactggatcagcggcgccacaccggtgc 2938 Query: 419 ccgcctggatggccttcttgatcttctccaagctgtacaggccaaagtcgggcttgatcc 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2937 ccgcctggatggccttcttgatcttctccaagctgtacaggccaaagtcgggcttgatcc 2878 Query: 479 ct 480 || Sbjct: 2877 ct 2876 Score = 369 bits (186), Expect = 9e-99 Identities = 193/194 (99%), Gaps = 1/194 (0%) Strand = Plus / Minus Query: 478 cctttggaaacgaggcgagagagggggttgatcttgctacggagggcgatggcggcttgg 537 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2803 cctttggaaacgaggcgagagagggggttgatcttgctacggagggcgatggcggcttgg 2744 Query: 538 aagtaagccttgtcgtcaaggccggagcagacgccggacgtcttccaggcgctcttccag 597 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2743 aagtaagccttgtcgtcaaggccggagcagacgccggacgtcttccaggcgctcttccag 2684 Query: 598 ctcttctggcccgttgttgctggggcacttgatgttgctccagtactgccttagaccgct 657 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2683 ctcttctgg-ccgttgttgctggggcacttgatgttgctccagtactgccttagaccgct 2625 Query: 658 gattcccagaatct 671 |||||||||||||| Sbjct: 2624 gattcccagaatct 2611 Score = 216 bits (109), Expect = 8e-53 Identities = 133/141 (94%) Strand = Plus / Minus Query: 171 agctcagtatcccatggcggcgccggccatctcaaatgcttcggcaaaggacacggagga 230 ||||||||||||||||||||||||||||||||| |||||||| || ||||||| ||||| Sbjct: 3754 agctcagtatcccatggcggcgccggccatctcgaatgcttcagcgtaggacaccgagga 3695 Query: 231 cgcggcctgctttagcatccacttcttgaaggggtggaagaggatctcgtcggagcacgt 290 ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 3694 cgcggactgctttagcatccacttcttgaaggggtggaagatgatctcgtcggagcacgt 3635 Query: 291 gaacttctgcggtttcgggca 311 |||||| |||||||||||||| Sbjct: 3634 gaacttttgcggtttcgggca 3614 Score = 117 bits (59), Expect = 5e-23 Identities = 66/67 (98%), Gaps = 1/67 (1%) Strand = Plus / Minus Query: 670 ctcgtcggagttgaaaggagtactgctgcagctggtctcgggggcgtcggtcggtcgcgt 729 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 2521 ctcgtcggagttgaaaggagtactgctgcagctggtctcgggggcgtcggtc-gtcgcgt 2463 Query: 730 tcaagac 736 ||||||| Sbjct: 2462 tcaagac 2456
>dbj|AK109411.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-E09, full insert sequence Length = 1114 Score = 190 bits (96), Expect = 4e-45 Identities = 330/406 (81%), Gaps = 4/406 (0%) Strand = Plus / Minus Query: 244 agcatccacttcttgaaggggtggaagaggatctcgtcggagcacgtgaac---ttctgc 300 ||||||||||||||||| |||||||||||||| |||||| ||| ||| || ||| | Sbjct: 772 agcatccacttcttgaaagggtggaagaggatgtcgtcgccgcaggtgtacggcttcctc 713 Query: 301 ggtttcgggcactcgatgagcgttttggcgtcctcggccacgcagatgaagatctggtac 360 || | |||||||| | || ||| ||||||||||| || ||||||| | | |||||||| Sbjct: 712 gggctggggcactccacgaacgtcttggcgtcctccgcgacgcagacgtatatctggtat 653 Query: 361 agctggaacttatcgaacggccctttgctacactggatcagcggcgccacaccggtgccc 420 ||||||||||| | |||||| || ||||| ||||||||||||| || | | ||| | ||| Sbjct: 652 agctggaacttgttgaacgggcccttgctgcactggatcagcgccggcgcgccgatcccc 593 Query: 421 gcctggatggccttcttgatcttctccaagctgtacaggccaaagtcgggcttgatccct 480 ||| ||| ||| ||||||||||| || ||||||||| |||||||| ||||| || || Sbjct: 592 tcctcgatcacctccttgatcttcttcacgctgtacagcccaaagtccggcttaataccg 533 Query: 481 ttggaaacgaggcgagagagggggttgatcttgctacggagggcgatggcggcttggaag 540 ||| ||||||||||| ||||||||||||||| |||||||||| ||||| | ||| Sbjct: 532 ttgctgacgaggcgagaaagggggttgatcttgtcgcggagggcgagggcggtgtcaaag 473 Query: 541 taagccttgtcgtcaaggccggagcagacgccggacgtcttccaggcgctcttccagctc 600 || || | ||| ||| ||||||||||||||||||||| ||| ||| ||||||||| | Sbjct: 472 taggcgctctcggtgaggtcggagcagacgccggacgtctcccacgcgttcttccagccc 413 Query: 601 ttctggcccgttgttgctggggcacttgatgttgctccagtactgc 646 |||||| ||| | |||||||||||| |||||||| ||||||||||| Sbjct: 412 ttctgg-ccgctcttgctggggcacctgatgttgttccagtactgc 368
>dbj|AK104648.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-H05, full insert sequence Length = 1114 Score = 190 bits (96), Expect = 4e-45 Identities = 330/406 (81%), Gaps = 4/406 (0%) Strand = Plus / Minus Query: 244 agcatccacttcttgaaggggtggaagaggatctcgtcggagcacgtgaac---ttctgc 300 ||||||||||||||||| |||||||||||||| |||||| ||| ||| || ||| | Sbjct: 772 agcatccacttcttgaaagggtggaagaggatgtcgtcgccgcaggtgtacggcttcctc 713 Query: 301 ggtttcgggcactcgatgagcgttttggcgtcctcggccacgcagatgaagatctggtac 360 || | |||||||| | || ||| ||||||||||| || ||||||| | | |||||||| Sbjct: 712 gggctggggcactccacgaacgtcttggcgtcctccgcgacgcagacgtatatctggtat 653 Query: 361 agctggaacttatcgaacggccctttgctacactggatcagcggcgccacaccggtgccc 420 ||||||||||| | |||||| || ||||| ||||||||||||| || | | ||| | ||| Sbjct: 652 agctggaacttgttgaacgggcccttgctgcactggatcagcgccggcgcgccgatcccc 593 Query: 421 gcctggatggccttcttgatcttctccaagctgtacaggccaaagtcgggcttgatccct 480 ||| ||| ||| ||||||||||| || ||||||||| |||||||| ||||| || || Sbjct: 592 tcctcgatcacctccttgatcttcttcacgctgtacagcccaaagtccggcttaataccg 533 Query: 481 ttggaaacgaggcgagagagggggttgatcttgctacggagggcgatggcggcttggaag 540 ||| ||||||||||| ||||||||||||||| |||||||||| ||||| | ||| Sbjct: 532 ttgctgacgaggcgagaaagggggttgatcttgtcgcggagggcgagggcggtgtcaaag 473 Query: 541 taagccttgtcgtcaaggccggagcagacgccggacgtcttccaggcgctcttccagctc 600 || || | ||| ||| ||||||||||||||||||||| ||| ||| ||||||||| | Sbjct: 472 taggcgctctcggtgaggtcggagcagacgccggacgtctcccacgcgttcttccagccc 413 Query: 601 ttctggcccgttgttgctggggcacttgatgttgctccagtactgc 646 |||||| ||| | |||||||||||| |||||||| ||||||||||| Sbjct: 412 ttctgg-ccgctcttgctggggcacctgatgttgttccagtactgc 368
>dbj|AK104456.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-A10, full insert sequence Length = 1077 Score = 190 bits (96), Expect = 4e-45 Identities = 330/406 (81%), Gaps = 4/406 (0%) Strand = Plus / Minus Query: 244 agcatccacttcttgaaggggtggaagaggatctcgtcggagcacgtgaac---ttctgc 300 ||||||||||||||||| |||||||||||||| |||||| ||| ||| || ||| | Sbjct: 767 agcatccacttcttgaaagggtggaagaggatgtcgtcgccgcaggtgtacggcttcctc 708 Query: 301 ggtttcgggcactcgatgagcgttttggcgtcctcggccacgcagatgaagatctggtac 360 || | |||||||| | || ||| ||||||||||| || ||||||| | | |||||||| Sbjct: 707 gggctggggcactccacgaacgtcttggcgtcctccgcgacgcagacgtatatctggtat 648 Query: 361 agctggaacttatcgaacggccctttgctacactggatcagcggcgccacaccggtgccc 420 ||||||||||| | |||||| || ||||| ||||||||||||| || | | ||| | ||| Sbjct: 647 agctggaacttgttgaacgggcccttgctgcactggatcagcgccggcgcgccgatcccc 588 Query: 421 gcctggatggccttcttgatcttctccaagctgtacaggccaaagtcgggcttgatccct 480 ||| ||| ||| ||||||||||| || ||||||||| |||||||| ||||| || || Sbjct: 587 tcctcgatcacctccttgatcttcttcacgctgtacagcccaaagtccggcttaataccg 528 Query: 481 ttggaaacgaggcgagagagggggttgatcttgctacggagggcgatggcggcttggaag 540 ||| ||||||||||| ||||||||||||||| |||||||||| ||||| | ||| Sbjct: 527 ttgctgacgaggcgagaaagggggttgatcttgtcgcggagggcgagggcggtgtcaaag 468 Query: 541 taagccttgtcgtcaaggccggagcagacgccggacgtcttccaggcgctcttccagctc 600 || || | ||| ||| ||||||||||||||||||||| ||| ||| ||||||||| | Sbjct: 467 taggcgctctcggtgaggtcggagcagacgccggacgtctcccacgcgttcttccagccc 408 Query: 601 ttctggcccgttgttgctggggcacttgatgttgctccagtactgc 646 |||||| ||| | |||||||||||| |||||||| ||||||||||| Sbjct: 407 ttctgg-ccgctcttgctggggcacctgatgttgttccagtactgc 363
>dbj|AK104390.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-H04, full insert sequence Length = 1085 Score = 190 bits (96), Expect = 4e-45 Identities = 330/406 (81%), Gaps = 4/406 (0%) Strand = Plus / Minus Query: 244 agcatccacttcttgaaggggtggaagaggatctcgtcggagcacgtgaac---ttctgc 300 ||||||||||||||||| |||||||||||||| |||||| ||| ||| || ||| | Sbjct: 772 agcatccacttcttgaaagggtggaagaggatgtcgtcgccgcaggtgtacggcttcctc 713 Query: 301 ggtttcgggcactcgatgagcgttttggcgtcctcggccacgcagatgaagatctggtac 360 || | |||||||| | || ||| ||||||||||| || ||||||| | | |||||||| Sbjct: 712 gggctggggcactccacgaacgtcttggcgtcctccgcgacgcagacgtatatctggtat 653 Query: 361 agctggaacttatcgaacggccctttgctacactggatcagcggcgccacaccggtgccc 420 ||||||||||| | |||||| || ||||| ||||||||||||| || | | ||| | ||| Sbjct: 652 agctggaacttgttgaacgggcccttgctgcactggatcagcgccggcgcgccgatcccc 593 Query: 421 gcctggatggccttcttgatcttctccaagctgtacaggccaaagtcgggcttgatccct 480 ||| ||| ||| ||||||||||| || ||||||||| |||||||| ||||| || || Sbjct: 592 tcctcgatcacctccttgatcttcttcacgctgtacagcccaaagtccggcttaataccg 533 Query: 481 ttggaaacgaggcgagagagggggttgatcttgctacggagggcgatggcggcttggaag 540 ||| ||||||||||| ||||||||||||||| |||||||||| ||||| | ||| Sbjct: 532 ttgctgacgaggcgagaaagggggttgatcttgtcgcggagggcgagggcggtgtcaaag 473 Query: 541 taagccttgtcgtcaaggccggagcagacgccggacgtcttccaggcgctcttccagctc 600 || || | ||| ||| ||||||||||||||||||||| ||| ||| ||||||||| | Sbjct: 472 taggcgctctcggtgaggtcggagcagacgccggacgtctcccacgcgttcttccagccc 413 Query: 601 ttctggcccgttgttgctggggcacttgatgttgctccagtactgc 646 |||||| ||| | |||||||||||| |||||||| ||||||||||| Sbjct: 412 ttctgg-ccgctcttgctggggcacctgatgttgttccagtactgc 368
>dbj|AK104263.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-D05, full insert sequence Length = 1114 Score = 190 bits (96), Expect = 4e-45 Identities = 330/406 (81%), Gaps = 4/406 (0%) Strand = Plus / Minus Query: 244 agcatccacttcttgaaggggtggaagaggatctcgtcggagcacgtgaac---ttctgc 300 ||||||||||||||||| |||||||||||||| |||||| ||| ||| || ||| | Sbjct: 772 agcatccacttcttgaaagggtggaagaggatgtcgtcgccgcaggtgtacggcttcctc 713 Query: 301 ggtttcgggcactcgatgagcgttttggcgtcctcggccacgcagatgaagatctggtac 360 || | |||||||| | || ||| ||||||||||| || ||||||| | | |||||||| Sbjct: 712 gggctggggcactccacgaacgtcttggcgtcctccgcgacgcagacgtatatctggtat 653 Query: 361 agctggaacttatcgaacggccctttgctacactggatcagcggcgccacaccggtgccc 420 ||||||||||| | |||||| || ||||| ||||||||||||| || | | ||| | ||| Sbjct: 652 agctggaacttgttgaacgggcccttgctgcactggatcagcgccggcgcgccgatcccc 593 Query: 421 gcctggatggccttcttgatcttctccaagctgtacaggccaaagtcgggcttgatccct 480 ||| ||| ||| ||||||||||| || ||||||||| |||||||| ||||| || || Sbjct: 592 tcctcgatcacctccttgatcttcttcacgctgtacagcccaaagtccggcttaataccg 533 Query: 481 ttggaaacgaggcgagagagggggttgatcttgctacggagggcgatggcggcttggaag 540 ||| ||||||||||| ||||||||||||||| |||||||||| ||||| | ||| Sbjct: 532 ttgctgacgaggcgagaaagggggttgatcttgtcgcggagggcgagggcggtgtcaaag 473 Query: 541 taagccttgtcgtcaaggccggagcagacgccggacgtcttccaggcgctcttccagctc 600 || || | ||| ||| ||||||||||||||||||||| ||| ||| ||||||||| | Sbjct: 472 taggcgctctcggtgaggtcggagcagacgccggacgtctcccacgcgttcttccagccc 413 Query: 601 ttctggcccgttgttgctggggcacttgatgttgctccagtactgc 646 |||||| ||| | |||||||||||| |||||||| ||||||||||| Sbjct: 412 ttctgg-ccgctcttgctggggcacctgatgttgttccagtactgc 368
>dbj|AK104261.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-B09, full insert sequence Length = 1140 Score = 190 bits (96), Expect = 4e-45 Identities = 330/406 (81%), Gaps = 4/406 (0%) Strand = Plus / Minus Query: 244 agcatccacttcttgaaggggtggaagaggatctcgtcggagcacgtgaac---ttctgc 300 ||||||||||||||||| |||||||||||||| |||||| ||| ||| || ||| | Sbjct: 772 agcatccacttcttgaaagggtggaagaggatgtcgtcgccgcaggtgtacggcttcctc 713 Query: 301 ggtttcgggcactcgatgagcgttttggcgtcctcggccacgcagatgaagatctggtac 360 || | |||||||| | || ||| ||||||||||| || ||||||| | | |||||||| Sbjct: 712 gggctggggcactccacgaacgtcttggcgtcctccgcgacgcagacgtatatctggtat 653 Query: 361 agctggaacttatcgaacggccctttgctacactggatcagcggcgccacaccggtgccc 420 ||||||||||| | |||||| || ||||| ||||||||||||| || | | ||| | ||| Sbjct: 652 agctggaacttgttgaacgggcccttgctgcactggatcagcgccggcgcgccgatcccc 593 Query: 421 gcctggatggccttcttgatcttctccaagctgtacaggccaaagtcgggcttgatccct 480 ||| ||| ||| ||||||||||| || ||||||||| |||||||| ||||| || || Sbjct: 592 tcctcgatcacctccttgatcttcttcacgctgtacagcccaaagtccggcttaataccg 533 Query: 481 ttggaaacgaggcgagagagggggttgatcttgctacggagggcgatggcggcttggaag 540 ||| ||||||||||| ||||||||||||||| |||||||||| ||||| | ||| Sbjct: 532 ttgctgacgaggcgagaaagggggttgatcttgtcgcggagggcgagggcggtgtcaaag 473 Query: 541 taagccttgtcgtcaaggccggagcagacgccggacgtcttccaggcgctcttccagctc 600 || || | ||| ||| ||||||||||||||||||||| ||| ||| ||||||||| | Sbjct: 472 taggcgctctcggtgaggtcggagcagacgccggacgtctcccacgcgttcttccagccc 413 Query: 601 ttctggcccgttgttgctggggcacttgatgttgctccagtactgc 646 |||||| ||| | |||||||||||| |||||||| ||||||||||| Sbjct: 412 ttctgg-ccgctcttgctggggcacctgatgttgttccagtactgc 368
>dbj|AK104237.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-H08, full insert sequence Length = 1173 Score = 190 bits (96), Expect = 4e-45 Identities = 330/406 (81%), Gaps = 4/406 (0%) Strand = Plus / Minus Query: 244 agcatccacttcttgaaggggtggaagaggatctcgtcggagcacgtgaac---ttctgc 300 ||||||||||||||||| |||||||||||||| |||||| ||| ||| || ||| | Sbjct: 772 agcatccacttcttgaaagggtggaagaggatgtcgtcgccgcaggtgtacggcttcctc 713 Query: 301 ggtttcgggcactcgatgagcgttttggcgtcctcggccacgcagatgaagatctggtac 360 || | |||||||| | || ||| ||||||||||| || ||||||| | | |||||||| Sbjct: 712 gggctggggcactccacgaacgtcttggcgtcctccgcgacgcagacgtatatctggtat 653 Query: 361 agctggaacttatcgaacggccctttgctacactggatcagcggcgccacaccggtgccc 420 ||||||||||| | |||||| || ||||| ||||||||||||| || | | ||| | ||| Sbjct: 652 agctggaacttgttgaacgggcccttgctgcactggatcagcgccggcgcgccgatcccc 593 Query: 421 gcctggatggccttcttgatcttctccaagctgtacaggccaaagtcgggcttgatccct 480 ||| ||| ||| ||||||||||| || ||||||||| |||||||| ||||| || || Sbjct: 592 tcctcgatcacctccttgatcttcttcacgctgtacagcccaaagtccggcttaataccg 533 Query: 481 ttggaaacgaggcgagagagggggttgatcttgctacggagggcgatggcggcttggaag 540 ||| ||||||||||| ||||||||||||||| |||||||||| ||||| | ||| Sbjct: 532 ttgctgacgaggcgagaaagggggttgatcttgtcgcggagggcgagggcggtgtcaaag 473 Query: 541 taagccttgtcgtcaaggccggagcagacgccggacgtcttccaggcgctcttccagctc 600 || || | ||| ||| ||||||||||||||||||||| ||| ||| ||||||||| | Sbjct: 472 taggcgctctcggtgaggtcggagcagacgccggacgtctcccacgcgttcttccagccc 413 Query: 601 ttctggcccgttgttgctggggcacttgatgttgctccagtactgc 646 |||||| ||| | |||||||||||| |||||||| ||||||||||| Sbjct: 412 ttctgg-ccgctcttgctggggcacctgatgttgttccagtactgc 368
>dbj|AK061442.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-C07, full insert sequence Length = 1151 Score = 190 bits (96), Expect = 4e-45 Identities = 330/406 (81%), Gaps = 4/406 (0%) Strand = Plus / Minus Query: 244 agcatccacttcttgaaggggtggaagaggatctcgtcggagcacgtgaac---ttctgc 300 ||||||||||||||||| |||||||||||||| |||||| ||| ||| || ||| | Sbjct: 772 agcatccacttcttgaaagggtggaagaggatgtcgtcgccgcaggtgtacggcttcctc 713 Query: 301 ggtttcgggcactcgatgagcgttttggcgtcctcggccacgcagatgaagatctggtac 360 || | |||||||| | || ||| ||||||||||| || ||||||| | | |||||||| Sbjct: 712 gggctggggcactccacgaacgtcttggcgtcctccgcgacgcagacgtatatctggtat 653 Query: 361 agctggaacttatcgaacggccctttgctacactggatcagcggcgccacaccggtgccc 420 ||||||||||| | |||||| || ||||| ||||||||||||| || | | ||| | ||| Sbjct: 652 agctggaacttgttgaacgggcccttgctgcactggatcagcgccggcgcgccgatcccc 593 Query: 421 gcctggatggccttcttgatcttctccaagctgtacaggccaaagtcgggcttgatccct 480 ||| ||| ||| ||||||||||| || ||||||||| |||||||| ||||| || || Sbjct: 592 tcctcgatcacctccttgatcttcttcacgctgtacagcccaaagtccggcttaataccg 533 Query: 481 ttggaaacgaggcgagagagggggttgatcttgctacggagggcgatggcggcttggaag 540 ||| ||||||||||| ||||||||||||||| |||||||||| ||||| | ||| Sbjct: 532 ttgctgacgaggcgagaaagggggttgatcttgtcgcggagggcgagggcggtgtcaaag 473 Query: 541 taagccttgtcgtcaaggccggagcagacgccggacgtcttccaggcgctcttccagctc 600 || || | ||| ||| ||||||||||||||||||||| ||| ||| ||||||||| | Sbjct: 472 taggcgctctcggtgaggtcggagcagacgccggacgtctcccacgcgttcttccagccc 413 Query: 601 ttctggcccgttgttgctggggcacttgatgttgctccagtactgc 646 |||||| ||| | |||||||||||| |||||||| ||||||||||| Sbjct: 412 ttctgg-ccgctcttgctggggcacctgatgttgttccagtactgc 368
>dbj|AK060036.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-A10, full insert sequence Length = 1127 Score = 190 bits (96), Expect = 4e-45 Identities = 330/406 (81%), Gaps = 4/406 (0%) Strand = Plus / Minus Query: 244 agcatccacttcttgaaggggtggaagaggatctcgtcggagcacgtgaac---ttctgc 300 ||||||||||||||||| |||||||||||||| |||||| ||| ||| || ||| | Sbjct: 748 agcatccacttcttgaaagggtggaagaggatgtcgtcgccgcaggtgtacggcttcctc 689 Query: 301 ggtttcgggcactcgatgagcgttttggcgtcctcggccacgcagatgaagatctggtac 360 || | |||||||| | || ||| ||||||||||| || ||||||| | | |||||||| Sbjct: 688 gggctggggcactccacgaacgtcttggcgtcctccgcgacgcagacgtatatctggtat 629 Query: 361 agctggaacttatcgaacggccctttgctacactggatcagcggcgccacaccggtgccc 420 ||||||||||| | |||||| || ||||| ||||||||||||| || | | ||| | ||| Sbjct: 628 agctggaacttgttgaacgggcccttgctgcactggatcagcgccggcgcgccgatcccc 569 Query: 421 gcctggatggccttcttgatcttctccaagctgtacaggccaaagtcgggcttgatccct 480 ||| ||| ||| ||||||||||| || ||||||||| |||||||| ||||| || || Sbjct: 568 tcctcgatcacctccttgatcttcttcacgctgtacagcccaaagtccggcttaataccg 509 Query: 481 ttggaaacgaggcgagagagggggttgatcttgctacggagggcgatggcggcttggaag 540 ||| ||||||||||| ||||||||||||||| |||||||||| ||||| | ||| Sbjct: 508 ttgctgacgaggcgagaaagggggttgatcttgtcgcggagggcgagggcggtgtcaaag 449 Query: 541 taagccttgtcgtcaaggccggagcagacgccggacgtcttccaggcgctcttccagctc 600 || || | ||| ||| ||||||||||||||||||||| ||| ||| ||||||||| | Sbjct: 448 taggcgctctcggtgaggtcggagcagacgccggacgtctcccacgcgttcttccagccc 389 Query: 601 ttctggcccgttgttgctggggcacttgatgttgctccagtactgc 646 |||||| ||| | |||||||||||| |||||||| ||||||||||| Sbjct: 388 ttctgg-ccgctcttgctggggcacctgatgttgttccagtactgc 344
>dbj|AK059757.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-D06, full insert sequence Length = 1173 Score = 190 bits (96), Expect = 4e-45 Identities = 330/406 (81%), Gaps = 4/406 (0%) Strand = Plus / Minus Query: 244 agcatccacttcttgaaggggtggaagaggatctcgtcggagcacgtgaac---ttctgc 300 ||||||||||||||||| |||||||||||||| |||||| ||| ||| || ||| | Sbjct: 772 agcatccacttcttgaaagggtggaagaggatgtcgtcgccgcaggtgtacggcttcctc 713 Query: 301 ggtttcgggcactcgatgagcgttttggcgtcctcggccacgcagatgaagatctggtac 360 || | |||||||| | || ||| ||||||||||| || ||||||| | | |||||||| Sbjct: 712 gggctggggcactccacgaacgtcttggcgtcctccgcgacgcagacgtatatctggtat 653 Query: 361 agctggaacttatcgaacggccctttgctacactggatcagcggcgccacaccggtgccc 420 ||||||||||| | |||||| || ||||| ||||||||||||| || | | ||| | ||| Sbjct: 652 agctggaacttgttgaacgggcccttgctgcactggatcagcgccggcgcgccgatcccc 593 Query: 421 gcctggatggccttcttgatcttctccaagctgtacaggccaaagtcgggcttgatccct 480 ||| ||| ||| ||||||||||| || ||||||||| |||||||| ||||| || || Sbjct: 592 tcctcgatcacctccttgatcttcttcacgctgtacagcccaaagtccggcttaataccg 533 Query: 481 ttggaaacgaggcgagagagggggttgatcttgctacggagggcgatggcggcttggaag 540 ||| ||||||||||| ||||||||||||||| |||||||||| ||||| | ||| Sbjct: 532 ttgctgacgaggcgagaaagggggttgatcttgtcgcggagggcgagggcggtgtcaaag 473 Query: 541 taagccttgtcgtcaaggccggagcagacgccggacgtcttccaggcgctcttccagctc 600 || || | ||| ||| ||||||||||||||||||||| ||| ||| ||||||||| | Sbjct: 472 taggcgctctcggtgaggtcggagcagacgccggacgtctcccacgcgttcttccagccc 413 Query: 601 ttctggcccgttgttgctggggcacttgatgttgctccagtactgc 646 |||||| ||| | |||||||||||| |||||||| ||||||||||| Sbjct: 412 ttctgg-ccgctcttgctggggcacctgatgttgttccagtactgc 368
>dbj|AK119171.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-H08, full insert sequence Length = 1096 Score = 182 bits (92), Expect = 1e-42 Identities = 330/406 (81%), Gaps = 5/406 (1%) Strand = Plus / Minus Query: 244 agcatccacttcttgaaggggtggaagaggatctcgtcggagcacgtgaac---ttctgc 300 ||||||||||||||||| |||||||||||||| |||||| ||| ||| || ||| | Sbjct: 771 agcatccacttcttgaaagggtggaagaggatgtcgtcgccgcaggtgtacggcttcctc 712 Query: 301 ggtttcgggcactcgatgagcgttttggcgtcctcggccacgcagatgaagatctggtac 360 || | |||||||| | || ||| ||||||||||| || ||||||| | | |||||||| Sbjct: 711 gggctggggcactccacgaacgtcttggcgtcctccgcgacgcagacgtatatctggtat 652 Query: 361 agctggaacttatcgaacggccctttgctacactggatcagcggcgccacaccggtgccc 420 ||||||||||| | |||||| || ||||| ||||||||||||| || | | ||| | ||| Sbjct: 651 agctggaacttgttgaacgggcccttgctgcactggatcagcgccggcgcgccgatcccc 592 Query: 421 gcctggatggccttcttgatcttctccaagctgtacaggccaaagtcgggcttgatccct 480 ||| ||| ||| ||||||||||| || ||||||||| |||||||| ||||| |||| | Sbjct: 591 tcctcgatcacctccttgatcttcttcacgctgtacagcccaaagtccggcttaatccgt 532 Query: 481 ttggaaacgaggcgagagagggggttgatcttgctacggagggcgatggcggcttggaag 540 | | ||||||||||| ||||||||||||||| |||||||||| ||||| | ||| Sbjct: 531 t-gctgacgaggcgagaaagggggttgatcttgtcgcggagggcgagggcggtgtcaaag 473 Query: 541 taagccttgtcgtcaaggccggagcagacgccggacgtcttccaggcgctcttccagctc 600 || || | ||| ||| ||||||||||||||||||||| ||| ||| ||||||||| | Sbjct: 472 taggcgctctcggtgaggtcggagcagacgccggacgtctcccacgcgttcttccagccc 413 Query: 601 ttctggcccgttgttgctggggcacttgatgttgctccagtactgc 646 |||||| ||| | |||||||||||| |||||||| ||||||||||| Sbjct: 412 ttctgg-ccgctcttgctggggcacctgatgttgttccagtactgc 368
>gb|AY104404.1| Zea mays PCO098786 mRNA sequence Length = 1018 Score = 115 bits (58), Expect = 2e-22 Identities = 82/90 (91%) Strand = Plus / Minus Query: 556 aggccggagcagacgccggacgtcttccaggcgctcttccagctcttctggcccgttgtt 615 |||||||||||| |||||| | ||||||||||| |||||||||| |||| ||||||||| Sbjct: 413 aggccggagcaggcgccggccttcttccaggcgttcttccagctgctctgccccgttgtt 354 Query: 616 gctggggcacttgatgttgctccagtactg 645 |||||||||| ||||||||||||||||||| Sbjct: 353 gctggggcacctgatgttgctccagtactg 324 Score = 83.8 bits (42), Expect = 8e-13 Identities = 60/66 (90%) Strand = Plus / Minus Query: 237 ctgctttagcatccacttcttgaaggggtggaagaggatctcgtcggagcacgtgaactt 296 |||||| ||||||||||||||||||||||||||||||||||| | |||||| ||| ||| Sbjct: 729 ctgcttgagcatccacttcttgaaggggtggaagaggatctccttggagcaggtgtactg 670 Query: 297 ctgcgg 302 |||||| Sbjct: 669 ctgcgg 664
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 109 bits (55), Expect = 1e-20 Identities = 189/233 (81%), Gaps = 3/233 (1%) Strand = Plus / Plus Query: 244 agcatccacttcttgaaggggtggaagaggatctcgtcggagcacgtgaac---ttctgc 300 ||||||||||||||||| |||||||||||||| |||||| ||| ||| || ||| | Sbjct: 20864227 agcatccacttcttgaaagggtggaagaggatgtcgtcgccgcaggtgtacggcttcctc 20864286 Query: 301 ggtttcgggcactcgatgagcgttttggcgtcctcggccacgcagatgaagatctggtac 360 || | |||||||| | || ||| ||||||||||| || ||||||| | | |||||||| Sbjct: 20864287 gggctggggcactccacgaacgtcttggcgtcctccgcgacgcagacgtatatctggtat 20864346 Query: 361 agctggaacttatcgaacggccctttgctacactggatcagcggcgccacaccggtgccc 420 ||||||||||| | |||||| || ||||| ||||||||||||| || | | ||| | ||| Sbjct: 20864347 agctggaacttgttgaacgggcccttgctgcactggatcagcgccggcgcgccgatcccc 20864406 Query: 421 gcctggatggccttcttgatcttctccaagctgtacaggccaaagtcgggctt 473 ||| ||| ||| ||||||||||| || ||||||||| |||||||| ||||| Sbjct: 20864407 tcctcgatcacctccttgatcttcttcacgctgtacagcccaaagtccggctt 20864459 Score = 103 bits (52), Expect = 8e-19 Identities = 134/160 (83%), Gaps = 1/160 (0%) Strand = Plus / Plus Query: 487 acgaggcgagagagggggttgatcttgctacggagggcgatggcggcttggaagtaagcc 546 ||||||||||| ||||||||||||||| |||||||||| ||||| | ||||| || Sbjct: 20864624 acgaggcgagaaagggggttgatcttgtcgcggagggcgagggcggtgtcaaagtaggcg 20864683 Query: 547 ttgtcgtcaaggccggagcagacgccggacgtcttccaggcgctcttccagctcttctgg 606 | ||| ||| ||||||||||||||||||||| ||| ||| ||||||||| ||||||| Sbjct: 20864684 ctctcggtgaggtcggagcagacgccggacgtctcccacgcgttcttccagcccttctgg 20864743 Query: 607 cccgttgttgctggggcacttgatgttgctccagtactgc 646 ||| | |||||||||||| |||||||| ||||||||||| Sbjct: 20864744 -ccgctcttgctggggcacctgatgttgttccagtactgc 20864782
>dbj|AP006174.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0229B10 Length = 114509 Score = 109 bits (55), Expect = 1e-20 Identities = 189/233 (81%), Gaps = 3/233 (1%) Strand = Plus / Plus Query: 244 agcatccacttcttgaaggggtggaagaggatctcgtcggagcacgtgaac---ttctgc 300 ||||||||||||||||| |||||||||||||| |||||| ||| ||| || ||| | Sbjct: 56453 agcatccacttcttgaaagggtggaagaggatgtcgtcgccgcaggtgtacggcttcctc 56512 Query: 301 ggtttcgggcactcgatgagcgttttggcgtcctcggccacgcagatgaagatctggtac 360 || | |||||||| | || ||| ||||||||||| || ||||||| | | |||||||| Sbjct: 56513 gggctggggcactccacgaacgtcttggcgtcctccgcgacgcagacgtatatctggtat 56572 Query: 361 agctggaacttatcgaacggccctttgctacactggatcagcggcgccacaccggtgccc 420 ||||||||||| | |||||| || ||||| ||||||||||||| || | | ||| | ||| Sbjct: 56573 agctggaacttgttgaacgggcccttgctgcactggatcagcgccggcgcgccgatcccc 56632 Query: 421 gcctggatggccttcttgatcttctccaagctgtacaggccaaagtcgggctt 473 ||| ||| ||| ||||||||||| || ||||||||| |||||||| ||||| Sbjct: 56633 tcctcgatcacctccttgatcttcttcacgctgtacagcccaaagtccggctt 56685 Score = 103 bits (52), Expect = 8e-19 Identities = 134/160 (83%), Gaps = 1/160 (0%) Strand = Plus / Plus Query: 487 acgaggcgagagagggggttgatcttgctacggagggcgatggcggcttggaagtaagcc 546 ||||||||||| ||||||||||||||| |||||||||| ||||| | ||||| || Sbjct: 56850 acgaggcgagaaagggggttgatcttgtcgcggagggcgagggcggtgtcaaagtaggcg 56909 Query: 547 ttgtcgtcaaggccggagcagacgccggacgtcttccaggcgctcttccagctcttctgg 606 | ||| ||| ||||||||||||||||||||| ||| ||| ||||||||| ||||||| Sbjct: 56910 ctctcggtgaggtcggagcagacgccggacgtctcccacgcgttcttccagcccttctgg 56969 Query: 607 cccgttgttgctggggcacttgatgttgctccagtactgc 646 ||| | |||||||||||| |||||||| ||||||||||| Sbjct: 56970 -ccgctcttgctggggcacctgatgttgttccagtactgc 57008
>dbj|AP006067.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0569E11 Length = 157319 Score = 109 bits (55), Expect = 1e-20 Identities = 189/233 (81%), Gaps = 3/233 (1%) Strand = Plus / Plus Query: 244 agcatccacttcttgaaggggtggaagaggatctcgtcggagcacgtgaac---ttctgc 300 ||||||||||||||||| |||||||||||||| |||||| ||| ||| || ||| | Sbjct: 139256 agcatccacttcttgaaagggtggaagaggatgtcgtcgccgcaggtgtacggcttcctc 139315 Query: 301 ggtttcgggcactcgatgagcgttttggcgtcctcggccacgcagatgaagatctggtac 360 || | |||||||| | || ||| ||||||||||| || ||||||| | | |||||||| Sbjct: 139316 gggctggggcactccacgaacgtcttggcgtcctccgcgacgcagacgtatatctggtat 139375 Query: 361 agctggaacttatcgaacggccctttgctacactggatcagcggcgccacaccggtgccc 420 ||||||||||| | |||||| || ||||| ||||||||||||| || | | ||| | ||| Sbjct: 139376 agctggaacttgttgaacgggcccttgctgcactggatcagcgccggcgcgccgatcccc 139435 Query: 421 gcctggatggccttcttgatcttctccaagctgtacaggccaaagtcgggctt 473 ||| ||| ||| ||||||||||| || ||||||||| |||||||| ||||| Sbjct: 139436 tcctcgatcacctccttgatcttcttcacgctgtacagcccaaagtccggctt 139488 Score = 103 bits (52), Expect = 8e-19 Identities = 134/160 (83%), Gaps = 1/160 (0%) Strand = Plus / Plus Query: 487 acgaggcgagagagggggttgatcttgctacggagggcgatggcggcttggaagtaagcc 546 ||||||||||| ||||||||||||||| |||||||||| ||||| | ||||| || Sbjct: 139653 acgaggcgagaaagggggttgatcttgtcgcggagggcgagggcggtgtcaaagtaggcg 139712 Query: 547 ttgtcgtcaaggccggagcagacgccggacgtcttccaggcgctcttccagctcttctgg 606 | ||| ||| ||||||||||||||||||||| ||| ||| ||||||||| ||||||| Sbjct: 139713 ctctcggtgaggtcggagcagacgccggacgtctcccacgcgttcttccagcccttctgg 139772 Query: 607 cccgttgttgctggggcacttgatgttgctccagtactgc 646 ||| | |||||||||||| |||||||| ||||||||||| Sbjct: 139773 -ccgctcttgctggggcacctgatgttgttccagtactgc 139811
>gb|U66241.1|ZMU66241 Zea mays S-like RNase (kin1) mRNA, complete cds Length = 988 Score = 107 bits (54), Expect = 5e-20 Identities = 82/90 (91%), Gaps = 1/90 (1%) Strand = Plus / Minus Query: 556 aggccggagcagacgccggacgtcttccaggcgctcttccagctcttctggcccgttgtt 615 |||||||||||| |||||| | ||||||||||| |||||||||| |||| ||||||||| Sbjct: 401 aggccggagcaggcgccggccttcttccaggcgttcttccagctgctctg-cccgttgtt 343 Query: 616 gctggggcacttgatgttgctccagtactg 645 |||||||||| ||||||||||||||||||| Sbjct: 342 gctggggcacctgatgttgctccagtactg 313 Score = 83.8 bits (42), Expect = 8e-13 Identities = 60/66 (90%) Strand = Plus / Minus Query: 237 ctgctttagcatccacttcttgaaggggtggaagaggatctcgtcggagcacgtgaactt 296 |||||| ||||||||||||||||||||||||||||||||||| | |||||| ||| ||| Sbjct: 717 ctgcttgagcatccacttcttgaaggggtggaagaggatctccttggagcaggtgtactg 658 Query: 297 ctgcgg 302 |||||| Sbjct: 657 ctgcgg 652
>gb|AC005018.2| Homo sapiens BAC clone GS1-223D4 from 7, complete sequence Length = 107527 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 615 tgctggggcacttgatgttgctcca 639 |||||||||||||||| |||||||| Sbjct: 64531 tgctggggcacttgatcttgctcca 64507
>gb|AC025728.4| Homo sapiens PAC clone RP5-884M6 from 7, complete sequence Length = 36215 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 422 cctggatggccttcttgatct 442 ||||||||||||||||||||| Sbjct: 30340 cctggatggccttcttgatct 30320
>gb|AE012119.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 27 of 460 of the complete genome Length = 10950 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 428 tggccttcttgatcttctcca 448 ||||||||||||||||||||| Sbjct: 1838 tggccttcttgatcttctcca 1818
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 428 tggccttcttgatcttctcca 448 ||||||||||||||||||||| Sbjct: 289650 tggccttcttgatcttctcca 289630
>gb|AC017104.8| Homo sapiens BAC clone RP11-562I5 from 2, complete sequence Length = 168880 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 582 ccaggcgctcttccagctctt 602 ||||||||||||||||||||| Sbjct: 74717 ccaggcgctcttccagctctt 74737 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,880,823 Number of Sequences: 3902068 Number of extensions: 6880823 Number of successful extensions: 127356 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 127143 Number of HSP's gapped (non-prelim): 181 length of query: 736 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 713 effective length of database: 17,143,297,704 effective search space: 12223171262952 effective search space used: 12223171262952 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
