Clone Name | rbasd19i04 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | SPA9_MOUSE (Q9D7D2) Serpin A9 precursor | 30 | 1.5 | 2 | NMD3A_HUMAN (Q8TCU5) Glutamate [NMDA] receptor subunit 3A precur... | 27 | 9.4 | 3 | END3_RICPR (O05956) Endonuclease III (EC 4.2.99.18) (DNA-(apurin... | 27 | 9.4 |
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>SPA9_MOUSE (Q9D7D2) Serpin A9 precursor| Length = 418 Score = 30.0 bits (66), Expect = 1.5 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +1 Query: 37 IEAKYRCXSDFSGLQKTHFFNISTAFH 117 I + +DFSG+ KTHF +S A H Sbjct: 329 IRDAFNSNADFSGITKTHFLQVSKAAH 355
>NMD3A_HUMAN (Q8TCU5) Glutamate [NMDA] receptor subunit 3A precursor| (N-methyl-D-aspartate receptor subtype NR3A) (NMDAR-L) Length = 1115 Score = 27.3 bits (59), Expect = 9.4 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = -2 Query: 300 PLLSFSYLKSENKPWXARPFSTLVMIC 220 PLL FS S + PW + PFS L +C Sbjct: 162 PLLPFS---SPSSPWSSDPFSFLQSVC 185
>END3_RICPR (O05956) Endonuclease III (EC 4.2.99.18) (DNA-(apurinic or| apyrimidinic site) lyase) Length = 212 Score = 27.3 bits (59), Expect = 9.4 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = -1 Query: 85 FSVSLKNLXCICILLQFNRSTSVPKSFK 2 F+ KN+ +C +L N TS+P +FK Sbjct: 82 FNSKAKNIIALCQILIKNYQTSIPNNFK 109 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,167,746 Number of Sequences: 219361 Number of extensions: 782517 Number of successful extensions: 1601 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 1570 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1601 length of database: 80,573,946 effective HSP length: 94 effective length of database: 59,954,012 effective search space used: 1438896288 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)