ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd19i04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SPA9_MOUSE (Q9D7D2) Serpin A9 precursor 30 1.5
2NMD3A_HUMAN (Q8TCU5) Glutamate [NMDA] receptor subunit 3A precur... 27 9.4
3END3_RICPR (O05956) Endonuclease III (EC 4.2.99.18) (DNA-(apurin... 27 9.4

>SPA9_MOUSE (Q9D7D2) Serpin A9 precursor|
          Length = 418

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 37  IEAKYRCXSDFSGLQKTHFFNISTAFH 117
           I   +   +DFSG+ KTHF  +S A H
Sbjct: 329 IRDAFNSNADFSGITKTHFLQVSKAAH 355



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>NMD3A_HUMAN (Q8TCU5) Glutamate [NMDA] receptor subunit 3A precursor|
           (N-methyl-D-aspartate receptor subtype NR3A) (NMDAR-L)
          Length = 1115

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 300 PLLSFSYLKSENKPWXARPFSTLVMIC 220
           PLL FS   S + PW + PFS L  +C
Sbjct: 162 PLLPFS---SPSSPWSSDPFSFLQSVC 185



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>END3_RICPR (O05956) Endonuclease III (EC 4.2.99.18) (DNA-(apurinic or|
           apyrimidinic site) lyase)
          Length = 212

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 85  FSVSLKNLXCICILLQFNRSTSVPKSFK 2
           F+   KN+  +C +L  N  TS+P +FK
Sbjct: 82  FNSKAKNIIALCQILIKNYQTSIPNNFK 109


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,167,746
Number of Sequences: 219361
Number of extensions: 782517
Number of successful extensions: 1601
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1601
length of database: 80,573,946
effective HSP length: 94
effective length of database: 59,954,012
effective search space used: 1438896288
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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