Clone Name
rbasd19i04
Clone Library Name
barley_pub
No.
Definition
Score (bits)
E Value
1 gb|AC016705.4|AC016705 Homo sapiens BAC clone RP11-210M15 from 1...
44
0.30
2 gb|AC016758.7| Homo sapiens BAC clone RP11-535E19 from 2, comple...
44
0.30
3 dbj|AK172422.1| Mus musculus activated spleen cDNA, RIKEN full-l...
42
1.2
4 dbj|AK089650.1| Mus musculus activated spleen cDNA, RIKEN full-l...
42
1.2
5 gb|AC114618.9| Mus musculus chromosome 3, clone RP24-86C15, comp...
42
1.2
6 emb|AL807245.17| Mouse DNA sequence from clone RP23-102B2 on chr...
42
1.2
7 gb|AC141632.4| Mus musculus BAC clone RP24-100G24 from 3, comple...
42
1.2
8 gb|AC164157.3| Mus musculus BAC clone RP24-297C1 from chromosome...
40
4.8
9 gb|AF186998.5| Homo sapiens chromosome 8 clone CTB-878E2 map q21...
40
4.8
10 gb|AC115911.14| Mus musculus chromosome 6, clone RP24-481I20, co...
40
4.8
11 gb|AC151834.7| Mus musculus BAC clone RP23-382M10 from chromosom...
40
4.8
12 gb|AC103770.5| Homo sapiens chromosome 8, clone RP11-122A3, comp...
40
4.8
13 gb|AC073068.8| Homo sapiens BAC clone RP11-159I18 from 7, comple...
40
4.8
14 emb|AL035660.16|HS300I2 Human DNA sequence from clone RP1-300I2 ...
40
4.8
15 emb|CR381695.4| Zebrafish DNA sequence from clone CH211-265I20 i...
40
4.8
16 gb|DP000041.1| Gorilla gorilla gorilla target 106 genomic scaffold
40
4.8
17 gb|DP000045.1| Pongo pygmaeus target 106 genomic scaffold
40
4.8
18 emb|BX890629.6| Zebrafish DNA sequence from clone CH211-42G2, co...
40
4.8
19 emb|BX465203.6| Zebrafish DNA sequence from clone CH211-221F10 i...
40
4.8
20 emb|BX004865.3| Zebrafish DNA sequence from clone CH211-204E13, ...
40
4.8
21 emb|AL954181.4| Zebrafish DNA sequence from clone CH211-216B1, c...
40
4.8
22 gb|AC122424.4| Mus musculus BAC clone RP24-173E19 from 8, comple...
40
4.8
>gb| AC016705.4 |AC016705 Homo sapiens BAC clone RP11-210M15 from 15, complete sequence
Length = 177964
Score = 44.1 bits (22), Expect = 0.30
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 125 tgaacatctaagctagtacaaa 146
||||||||||||||||||||||
Sbjct: 121419 tgaacatctaagctagtacaaa 121440
>gb| AC016758.7 | Homo sapiens BAC clone RP11-535E19 from 2, complete sequence
Length = 64256
Score = 44.1 bits (22), Expect = 0.30
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 ctttaaaagatttaggaactga 22
||||||||||||||||||||||
Sbjct: 34963 ctttaaaagatttaggaactga 34942
>dbj| AK172422.1 | Mus musculus activated spleen cDNA, RIKEN full-length enriched
library, clone:F830206O22 product:unclassifiable, full
insert sequence
Length = 2363
Score = 42.1 bits (21), Expect = 1.2
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 65 atttttcaggcttacagaaaa 85
|||||||||||||||||||||
Sbjct: 1711 atttttcaggcttacagaaaa 1691
>dbj| AK089650.1 | Mus musculus activated spleen cDNA, RIKEN full-length enriched
library, clone:F830007A21 product:unclassifiable, full
insert sequence
Length = 2363
Score = 42.1 bits (21), Expect = 1.2
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 65 atttttcaggcttacagaaaa 85
|||||||||||||||||||||
Sbjct: 1711 atttttcaggcttacagaaaa 1691
>gb| AC114618.9 | Mus musculus chromosome 3, clone RP24-86C15, complete sequence
Length = 209209
Score = 42.1 bits (21), Expect = 1.2
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 65 atttttcaggcttacagaaaa 85
|||||||||||||||||||||
Sbjct: 189863 atttttcaggcttacagaaaa 189843
>emb| AL807245.17 | Mouse DNA sequence from clone RP23-102B2 on chromosome 11, complete
sequence
Length = 114581
Score = 42.1 bits (21), Expect = 1.2
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 79 cagaaaactcacttttttaac 99
|||||||||||||||||||||
Sbjct: 25467 cagaaaactcacttttttaac 25447
>gb| AC141632.4 | Mus musculus BAC clone RP24-100G24 from 3, complete sequence
Length = 180488
Score = 42.1 bits (21), Expect = 1.2
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 65 atttttcaggcttacagaaaa 85
|||||||||||||||||||||
Sbjct: 21222 atttttcaggcttacagaaaa 21202
>gb| AC164157.3 | Mus musculus BAC clone RP24-297C1 from chromosome 6, complete sequence
Length = 176868
Score = 40.1 bits (20), Expect = 4.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 80 agaaaactcacttttttaac 99
||||||||||||||||||||
Sbjct: 36980 agaaaactcacttttttaac 36999
>gb| AF186998.5 | Homo sapiens chromosome 8 clone CTB-878E2 map q21.3, complete sequence
Length = 125222
Score = 40.1 bits (20), Expect = 4.8
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 323 ctccttccccaggagggcaaggagcatg 350
||||||||||| |||||||||| |||||
Sbjct: 25802 ctccttccccaagagggcaaggggcatg 25829
>gb| AC115911.14 | Mus musculus chromosome 6, clone RP24-481I20, complete sequence
Length = 168641
Score = 40.1 bits (20), Expect = 4.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 80 agaaaactcacttttttaac 99
||||||||||||||||||||
Sbjct: 49680 agaaaactcacttttttaac 49661
>gb| AC151834.7 | Mus musculus BAC clone RP23-382M10 from chromosome 8, complete sequence
Length = 208404
Score = 40.1 bits (20), Expect = 4.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 257 cagggtttattctctgattt 276
||||||||||||||||||||
Sbjct: 160599 cagggtttattctctgattt 160618
>gb| AC103770.5 | Homo sapiens chromosome 8, clone RP11-122A3, complete sequence
Length = 176632
Score = 40.1 bits (20), Expect = 4.8
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 323 ctccttccccaggagggcaaggagcatg 350
||||||||||| |||||||||| |||||
Sbjct: 130824 ctccttccccaagagggcaaggggcatg 130797
>gb| AC073068.8 | Homo sapiens BAC clone RP11-159I18 from 7, complete sequence
Length = 171058
Score = 40.1 bits (20), Expect = 4.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 274 tttgagatatgaaaaggata 293
||||||||||||||||||||
Sbjct: 78955 tttgagatatgaaaaggata 78936
>emb| AL035660.16 |HS300I2 Human DNA sequence from clone RP1-300I2 on chromosome 20q12-13.12
Contains a novel gene and the SLPI gene for secretory
leukocyte protease inhibitor (antileukoproteinase),
complete sequence
Length = 63796
Score = 40.1 bits (20), Expect = 4.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 68 tttcaggcttacagaaaact 87
||||||||||||||||||||
Sbjct: 53321 tttcaggcttacagaaaact 53302
>emb| CR381695.4 | Zebrafish DNA sequence from clone CH211-265I20 in linkage group 14,
complete sequence
Length = 81999
Score = 40.1 bits (20), Expect = 4.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 276 tgagatatgaaaaggataac 295
||||||||||||||||||||
Sbjct: 8517 tgagatatgaaaaggataac 8498
>gb| DP000041.1 | Gorilla gorilla gorilla target 106 genomic scaffold
Length = 355851
Score = 40.1 bits (20), Expect = 4.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 68 tttcaggcttacagaaaact 87
||||||||||||||||||||
Sbjct: 327099 tttcaggcttacagaaaact 327080
>gb| DP000045.1 | Pongo pygmaeus target 106 genomic scaffold
Length = 644818
Score = 40.1 bits (20), Expect = 4.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 68 tttcaggcttacagaaaact 87
||||||||||||||||||||
Sbjct: 442530 tttcaggcttacagaaaact 442511
>emb| BX890629.6 | Zebrafish DNA sequence from clone CH211-42G2, complete sequence
Length = 169168
Score = 40.1 bits (20), Expect = 4.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 31 gattaaattgaagcaaaata 50
||||||||||||||||||||
Sbjct: 40514 gattaaattgaagcaaaata 40495
>emb| BX465203.6 | Zebrafish DNA sequence from clone CH211-221F10 in linkage group 14,
complete sequence
Length = 150992
Score = 40.1 bits (20), Expect = 4.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 276 tgagatatgaaaaggataac 295
||||||||||||||||||||
Sbjct: 142477 tgagatatgaaaaggataac 142496
>emb| BX004865.3 | Zebrafish DNA sequence from clone CH211-204E13, complete sequence
Length = 143137
Score = 40.1 bits (20), Expect = 4.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 gattaaattgaagcaaaata 50
||||||||||||||||||||
Sbjct: 106566 gattaaattgaagcaaaata 106585
>emb| AL954181.4 | Zebrafish DNA sequence from clone CH211-216B1, complete sequence
Length = 143138
Score = 40.1 bits (20), Expect = 4.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 gattaaattgaagcaaaata 50
||||||||||||||||||||
Sbjct: 106567 gattaaattgaagcaaaata 106586
>gb| AC122424.4 | Mus musculus BAC clone RP24-173E19 from 8, complete sequence
Length = 175181
Score = 40.1 bits (20), Expect = 4.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 257 cagggtttattctctgattt 276
||||||||||||||||||||
Sbjct: 139626 cagggtttattctctgattt 139607
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,005,579
Number of Sequences: 3902068
Number of extensions: 3005579
Number of successful extensions: 57322
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57290
Number of HSP's gapped (non-prelim): 32
length of query: 358
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 336
effective length of database: 17,147,199,772
effective search space: 5761459123392
effective search space used: 5761459123392
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)