Clone Name | rbasd19i04 |
---|---|
Clone Library Name | barley_pub |
>gb|AC016705.4|AC016705 Homo sapiens BAC clone RP11-210M15 from 15, complete sequence Length = 177964 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 125 tgaacatctaagctagtacaaa 146 |||||||||||||||||||||| Sbjct: 121419 tgaacatctaagctagtacaaa 121440
>gb|AC016758.7| Homo sapiens BAC clone RP11-535E19 from 2, complete sequence Length = 64256 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1 ctttaaaagatttaggaactga 22 |||||||||||||||||||||| Sbjct: 34963 ctttaaaagatttaggaactga 34942
>dbj|AK172422.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830206O22 product:unclassifiable, full insert sequence Length = 2363 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 65 atttttcaggcttacagaaaa 85 ||||||||||||||||||||| Sbjct: 1711 atttttcaggcttacagaaaa 1691
>dbj|AK089650.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830007A21 product:unclassifiable, full insert sequence Length = 2363 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 65 atttttcaggcttacagaaaa 85 ||||||||||||||||||||| Sbjct: 1711 atttttcaggcttacagaaaa 1691
>gb|AC114618.9| Mus musculus chromosome 3, clone RP24-86C15, complete sequence Length = 209209 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 65 atttttcaggcttacagaaaa 85 ||||||||||||||||||||| Sbjct: 189863 atttttcaggcttacagaaaa 189843
>emb|AL807245.17| Mouse DNA sequence from clone RP23-102B2 on chromosome 11, complete sequence Length = 114581 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 79 cagaaaactcacttttttaac 99 ||||||||||||||||||||| Sbjct: 25467 cagaaaactcacttttttaac 25447
>gb|AC141632.4| Mus musculus BAC clone RP24-100G24 from 3, complete sequence Length = 180488 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 65 atttttcaggcttacagaaaa 85 ||||||||||||||||||||| Sbjct: 21222 atttttcaggcttacagaaaa 21202
>gb|AC164157.3| Mus musculus BAC clone RP24-297C1 from chromosome 6, complete sequence Length = 176868 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 agaaaactcacttttttaac 99 |||||||||||||||||||| Sbjct: 36980 agaaaactcacttttttaac 36999
>gb|AF186998.5| Homo sapiens chromosome 8 clone CTB-878E2 map q21.3, complete sequence Length = 125222 Score = 40.1 bits (20), Expect = 4.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 323 ctccttccccaggagggcaaggagcatg 350 ||||||||||| |||||||||| ||||| Sbjct: 25802 ctccttccccaagagggcaaggggcatg 25829
>gb|AC115911.14| Mus musculus chromosome 6, clone RP24-481I20, complete sequence Length = 168641 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 agaaaactcacttttttaac 99 |||||||||||||||||||| Sbjct: 49680 agaaaactcacttttttaac 49661
>gb|AC151834.7| Mus musculus BAC clone RP23-382M10 from chromosome 8, complete sequence Length = 208404 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 cagggtttattctctgattt 276 |||||||||||||||||||| Sbjct: 160599 cagggtttattctctgattt 160618
>gb|AC103770.5| Homo sapiens chromosome 8, clone RP11-122A3, complete sequence Length = 176632 Score = 40.1 bits (20), Expect = 4.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 323 ctccttccccaggagggcaaggagcatg 350 ||||||||||| |||||||||| ||||| Sbjct: 130824 ctccttccccaagagggcaaggggcatg 130797
>gb|AC073068.8| Homo sapiens BAC clone RP11-159I18 from 7, complete sequence Length = 171058 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 tttgagatatgaaaaggata 293 |||||||||||||||||||| Sbjct: 78955 tttgagatatgaaaaggata 78936
>emb|AL035660.16|HS300I2 Human DNA sequence from clone RP1-300I2 on chromosome 20q12-13.12 Contains a novel gene and the SLPI gene for secretory leukocyte protease inhibitor (antileukoproteinase), complete sequence Length = 63796 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 tttcaggcttacagaaaact 87 |||||||||||||||||||| Sbjct: 53321 tttcaggcttacagaaaact 53302
>emb|CR381695.4| Zebrafish DNA sequence from clone CH211-265I20 in linkage group 14, complete sequence Length = 81999 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 tgagatatgaaaaggataac 295 |||||||||||||||||||| Sbjct: 8517 tgagatatgaaaaggataac 8498
>gb|DP000041.1| Gorilla gorilla gorilla target 106 genomic scaffold Length = 355851 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 tttcaggcttacagaaaact 87 |||||||||||||||||||| Sbjct: 327099 tttcaggcttacagaaaact 327080
>gb|DP000045.1| Pongo pygmaeus target 106 genomic scaffold Length = 644818 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 tttcaggcttacagaaaact 87 |||||||||||||||||||| Sbjct: 442530 tttcaggcttacagaaaact 442511
>emb|BX890629.6| Zebrafish DNA sequence from clone CH211-42G2, complete sequence Length = 169168 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 gattaaattgaagcaaaata 50 |||||||||||||||||||| Sbjct: 40514 gattaaattgaagcaaaata 40495
>emb|BX465203.6| Zebrafish DNA sequence from clone CH211-221F10 in linkage group 14, complete sequence Length = 150992 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 tgagatatgaaaaggataac 295 |||||||||||||||||||| Sbjct: 142477 tgagatatgaaaaggataac 142496
>emb|BX004865.3| Zebrafish DNA sequence from clone CH211-204E13, complete sequence Length = 143137 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 gattaaattgaagcaaaata 50 |||||||||||||||||||| Sbjct: 106566 gattaaattgaagcaaaata 106585
>emb|AL954181.4| Zebrafish DNA sequence from clone CH211-216B1, complete sequence Length = 143138 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 gattaaattgaagcaaaata 50 |||||||||||||||||||| Sbjct: 106567 gattaaattgaagcaaaata 106586
>gb|AC122424.4| Mus musculus BAC clone RP24-173E19 from 8, complete sequence Length = 175181 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 cagggtttattctctgattt 276 |||||||||||||||||||| Sbjct: 139626 cagggtttattctctgattt 139607 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,005,579 Number of Sequences: 3902068 Number of extensions: 3005579 Number of successful extensions: 57322 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57290 Number of HSP's gapped (non-prelim): 32 length of query: 358 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 336 effective length of database: 17,147,199,772 effective search space: 5761459123392 effective search space used: 5761459123392 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)