ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd19i04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC016705.4|AC016705 Homo sapiens BAC clone RP11-210M15 from 1... 44 0.30
2gb|AC016758.7| Homo sapiens BAC clone RP11-535E19 from 2, comple... 44 0.30
3dbj|AK172422.1| Mus musculus activated spleen cDNA, RIKEN full-l... 42 1.2
4dbj|AK089650.1| Mus musculus activated spleen cDNA, RIKEN full-l... 42 1.2
5gb|AC114618.9| Mus musculus chromosome 3, clone RP24-86C15, comp... 42 1.2
6emb|AL807245.17| Mouse DNA sequence from clone RP23-102B2 on chr... 42 1.2
7gb|AC141632.4| Mus musculus BAC clone RP24-100G24 from 3, comple... 42 1.2
8gb|AC164157.3| Mus musculus BAC clone RP24-297C1 from chromosome... 40 4.8
9gb|AF186998.5| Homo sapiens chromosome 8 clone CTB-878E2 map q21... 40 4.8
10gb|AC115911.14| Mus musculus chromosome 6, clone RP24-481I20, co... 40 4.8
11gb|AC151834.7| Mus musculus BAC clone RP23-382M10 from chromosom... 40 4.8
12gb|AC103770.5| Homo sapiens chromosome 8, clone RP11-122A3, comp... 40 4.8
13gb|AC073068.8| Homo sapiens BAC clone RP11-159I18 from 7, comple... 40 4.8
14emb|AL035660.16|HS300I2 Human DNA sequence from clone RP1-300I2 ... 40 4.8
15emb|CR381695.4| Zebrafish DNA sequence from clone CH211-265I20 i... 40 4.8
16gb|DP000041.1| Gorilla gorilla gorilla target 106 genomic scaffold 40 4.8
17gb|DP000045.1| Pongo pygmaeus target 106 genomic scaffold 40 4.8
18emb|BX890629.6| Zebrafish DNA sequence from clone CH211-42G2, co... 40 4.8
19emb|BX465203.6| Zebrafish DNA sequence from clone CH211-221F10 i... 40 4.8
20emb|BX004865.3| Zebrafish DNA sequence from clone CH211-204E13, ... 40 4.8
21emb|AL954181.4| Zebrafish DNA sequence from clone CH211-216B1, c... 40 4.8
22gb|AC122424.4| Mus musculus BAC clone RP24-173E19 from 8, comple... 40 4.8

>gb|AC016705.4|AC016705 Homo sapiens BAC clone RP11-210M15 from 15, complete sequence
          Length = 177964

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 125    tgaacatctaagctagtacaaa 146
              ||||||||||||||||||||||
Sbjct: 121419 tgaacatctaagctagtacaaa 121440



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>gb|AC016758.7| Homo sapiens BAC clone RP11-535E19 from 2, complete sequence
          Length = 64256

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 1     ctttaaaagatttaggaactga 22
             ||||||||||||||||||||||
Sbjct: 34963 ctttaaaagatttaggaactga 34942



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>dbj|AK172422.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
            library, clone:F830206O22 product:unclassifiable, full
            insert sequence
          Length = 2363

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 65   atttttcaggcttacagaaaa 85
            |||||||||||||||||||||
Sbjct: 1711 atttttcaggcttacagaaaa 1691



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>dbj|AK089650.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
            library, clone:F830007A21 product:unclassifiable, full
            insert sequence
          Length = 2363

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 65   atttttcaggcttacagaaaa 85
            |||||||||||||||||||||
Sbjct: 1711 atttttcaggcttacagaaaa 1691



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>gb|AC114618.9| Mus musculus chromosome 3, clone RP24-86C15, complete sequence
          Length = 209209

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 65     atttttcaggcttacagaaaa 85
              |||||||||||||||||||||
Sbjct: 189863 atttttcaggcttacagaaaa 189843



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>emb|AL807245.17| Mouse DNA sequence from clone RP23-102B2 on chromosome 11, complete
             sequence
          Length = 114581

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 79    cagaaaactcacttttttaac 99
             |||||||||||||||||||||
Sbjct: 25467 cagaaaactcacttttttaac 25447



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>gb|AC141632.4| Mus musculus BAC clone RP24-100G24 from 3, complete sequence
          Length = 180488

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 65    atttttcaggcttacagaaaa 85
             |||||||||||||||||||||
Sbjct: 21222 atttttcaggcttacagaaaa 21202



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>gb|AC164157.3| Mus musculus BAC clone RP24-297C1 from chromosome 6, complete sequence
          Length = 176868

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 80    agaaaactcacttttttaac 99
             ||||||||||||||||||||
Sbjct: 36980 agaaaactcacttttttaac 36999



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>gb|AF186998.5| Homo sapiens chromosome 8 clone CTB-878E2 map q21.3, complete sequence
          Length = 125222

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 323   ctccttccccaggagggcaaggagcatg 350
             ||||||||||| |||||||||| |||||
Sbjct: 25802 ctccttccccaagagggcaaggggcatg 25829



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>gb|AC115911.14| Mus musculus chromosome 6, clone RP24-481I20, complete sequence
          Length = 168641

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    agaaaactcacttttttaac 99
             ||||||||||||||||||||
Sbjct: 49680 agaaaactcacttttttaac 49661



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>gb|AC151834.7| Mus musculus BAC clone RP23-382M10 from chromosome 8, complete sequence
          Length = 208404

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 257    cagggtttattctctgattt 276
              ||||||||||||||||||||
Sbjct: 160599 cagggtttattctctgattt 160618



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>gb|AC103770.5| Homo sapiens chromosome 8, clone RP11-122A3, complete sequence
          Length = 176632

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 323    ctccttccccaggagggcaaggagcatg 350
              ||||||||||| |||||||||| |||||
Sbjct: 130824 ctccttccccaagagggcaaggggcatg 130797



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>gb|AC073068.8| Homo sapiens BAC clone RP11-159I18 from 7, complete sequence
          Length = 171058

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 274   tttgagatatgaaaaggata 293
             ||||||||||||||||||||
Sbjct: 78955 tttgagatatgaaaaggata 78936



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>emb|AL035660.16|HS300I2 Human DNA sequence from clone RP1-300I2 on chromosome 20q12-13.12
             Contains a novel gene and the SLPI gene for secretory
             leukocyte protease inhibitor (antileukoproteinase),
             complete sequence
          Length = 63796

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    tttcaggcttacagaaaact 87
             ||||||||||||||||||||
Sbjct: 53321 tttcaggcttacagaaaact 53302



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>emb|CR381695.4| Zebrafish DNA sequence from clone CH211-265I20 in linkage group 14,
            complete sequence
          Length = 81999

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 276  tgagatatgaaaaggataac 295
            ||||||||||||||||||||
Sbjct: 8517 tgagatatgaaaaggataac 8498



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>gb|DP000041.1| Gorilla gorilla gorilla target 106 genomic scaffold
          Length = 355851

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 68     tttcaggcttacagaaaact 87
              ||||||||||||||||||||
Sbjct: 327099 tttcaggcttacagaaaact 327080



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>gb|DP000045.1| Pongo pygmaeus target 106 genomic scaffold
          Length = 644818

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 68     tttcaggcttacagaaaact 87
              ||||||||||||||||||||
Sbjct: 442530 tttcaggcttacagaaaact 442511



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>emb|BX890629.6| Zebrafish DNA sequence from clone CH211-42G2, complete sequence
          Length = 169168

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 31    gattaaattgaagcaaaata 50
             ||||||||||||||||||||
Sbjct: 40514 gattaaattgaagcaaaata 40495



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>emb|BX465203.6| Zebrafish DNA sequence from clone CH211-221F10 in linkage group 14,
              complete sequence
          Length = 150992

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 276    tgagatatgaaaaggataac 295
              ||||||||||||||||||||
Sbjct: 142477 tgagatatgaaaaggataac 142496



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>emb|BX004865.3| Zebrafish DNA sequence from clone CH211-204E13, complete sequence
          Length = 143137

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 31     gattaaattgaagcaaaata 50
              ||||||||||||||||||||
Sbjct: 106566 gattaaattgaagcaaaata 106585



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>emb|AL954181.4| Zebrafish DNA sequence from clone CH211-216B1, complete sequence
          Length = 143138

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 31     gattaaattgaagcaaaata 50
              ||||||||||||||||||||
Sbjct: 106567 gattaaattgaagcaaaata 106586



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>gb|AC122424.4| Mus musculus BAC clone RP24-173E19 from 8, complete sequence
          Length = 175181

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 257    cagggtttattctctgattt 276
              ||||||||||||||||||||
Sbjct: 139626 cagggtttattctctgattt 139607


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,005,579
Number of Sequences: 3902068
Number of extensions: 3005579
Number of successful extensions: 57322
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57290
Number of HSP's gapped (non-prelim): 32
length of query: 358
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 336
effective length of database: 17,147,199,772
effective search space: 5761459123392
effective search space used: 5761459123392
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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