No.
Definition
Score (bits)
E Value
1 dbj|AK099680.1| Oryza sativa (japonica cultivar-group) cDNA clon...
416
e-113
2 dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D...
145
2e-31
3 dbj|AP006054.3| Oryza sativa (japonica cultivar-group) genomic D...
145
2e-31
4 dbj|AP005852.2| Oryza sativa (japonica cultivar-group) genomic D...
145
2e-31
5 gb|AC127170.11| Medicago truncatula clone mth2-35d10, complete s...
46
0.14
6 gb|AC160012.1| Medicago truncatula chromosome 2 BAC clone mth2-1...
46
0.14
7 emb|Y10237.1|LCCVORFS Little cherry virus 1 ORF's 1-8, genomic RNA
46
0.14
8 ref|XM_676576.1| Aspergillus nidulans FGSC A4 hypothetical prote...
44
0.55
9 emb|CR956621.10| Pig DNA sequence from clone CH242-201E3 on chro...
44
0.55
10 emb|CR925759.7| Wallaby DNA sequence from clone MEKBa-346C2, com...
42
2.2
11 gb|AC007298.17| Homo sapiens 12q22 BAC RPCI11-256L6 (Roswell Par...
40
8.6
12 emb|AL590080.25| Human DNA sequence from clone RP11-469M1 on chr...
40
8.6
13 emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, ...
40
8.6
14 gb|L47617.2|VIBPATM Vibrio harveyi ribosomal protein L34 (rpmH) ...
40
8.6
15 ref|NM_078745.2| Drosophila melanogaster echinoid CG12676-RA (ed...
40
8.6
16 gb|AC018478.4| Drosophila melanogaster, chromosome 4, region 101...
40
8.6
17 gb|AC010668.7| Drosophila melanogaster, chromosome 4, region 101...
40
8.6
18 gb|AY051656.1| Drosophila melanogaster LD11008 full length cDNA
40
8.6
19 dbj|AK017906.1| Mus musculus adult male thymus cDNA, RIKEN full-...
40
8.6
20 dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D...
40
8.6
21 gb|AC008003.8|AC008003 Drosophila melanogaster, chromosome 2L, r...
40
8.6
22 gb|AF275903.1|AF275903 Drosophila melanogaster echinoid (ed) mRN...
40
8.6
23 dbj|BA000031.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromo...
40
8.6
24 emb|AL845457.16| Mouse DNA sequence from clone RP23-34E24 on chr...
40
8.6
25 emb|AL935207.6| Zebrafish DNA sequence from clone CH211-251J8, c...
40
8.6
26 dbj|AP006532.3| Oryza sativa (japonica cultivar-group) genomic D...
40
8.6
27 gb|AE003577.4| Drosophila melanogaster chromosome 2L, section 14...
40
8.6
28 dbj|AP005503.2| Oryza sativa (japonica cultivar-group) genomic D...
40
8.6
29 gb|AE003843.5| Drosophila melanogaster chromosome 4, section 3 o...
40
8.6
30 emb|AL590449.1|CNS07EGG chromosome X of strain GB-M1 of Encephal...
40
8.6
31 gb|AC148919.1| Gallus gallus BAC clone CH261-43B19 from chromoso...
40
8.6
32 dbj|AP002893.3| Homo sapiens genomic DNA, chromosome 11q clone:R...
40
8.6
>dbj|AP008212.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 145 bits (73), Expect = 2e-31
Identities = 133/153 (86%)
Strand = Plus / Minus
Query: 385 ctgcaaattttcggccttgaatatttcaccaacaaccaacatttgtttaatgatcctagt 444
||||| |||||| ||||||||||||||||||||| ||||||||||||||||||| ||| |
Sbjct: 11524016 ctgcagattttcagccttgaatatttcaccaacagccaacatttgtttaatgattctatt 11523957
Query: 445 gatgttctccctctcggattttaggtactcctggaccgacttctcgcttgaaagggatgc 504
|| || || ||||| || |||||| ||||| || ||||| | |||||||||||||||
Sbjct: 11523956 aatattttctctctcactttctaggtattcctgaactgacttttggcttgaaagggatgc 11523897
Query: 505 tagctggtctttgtctagcttcctttctgcctg 537
||||||||||| ||||||||||||||||||||
Sbjct: 11523896 cagctggtctttatctagcttcctttctgcctg 11523864
Score = 111 bits (56), Expect = 3e-21
Identities = 92/104 (88%)
Strand = Plus / Minus
Query: 286 aacctgctgcttgatgttcccctcgtcgtagtcttgattatagcgtttgaactcttcaat 345
|||||||||||||||| ||||||| || ||||||||||||||| ||||||||||||| ||
Sbjct: 11524232 aacctgctgcttgatgctcccctcatcatagtcttgattatagtgtttgaactcttctat 11524173
Query: 346 ggagttctcaacttccttgacgagctggtctgtcgaatactgca 389
||||||||||||||||| || || || || |||||| ||||||
Sbjct: 11524172 agagttctcaacttcctttaccagttgctcggtcgaaaactgca 11524129
Score = 107 bits (54), Expect = 4e-20
Identities = 68/73 (93%)
Strand = Plus / Minus
Query: 534 cctgaagttgtanaagtttggctccatacaactgctggccttgttcttgaaacaaggaac 593
|||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 11523796 cctggagttgtagaagtttggctccatacaactgctggccttgttcttgaaataaggctc 11523737
Query: 594 gtggaacatcaac 606
|||||||||||||
Sbjct: 11523736 gtggaacatcaac 11523724
Score = 79.8 bits (40), Expect = 1e-11
Identities = 64/72 (88%)
Strand = Plus / Minus
Query: 221 atgtactcgatcgtgcagttctccttgagccactcaagcacctttgcagcctccagaaca 280
|||||||| || ||||||||||||||||||| || |||||||| || ||||| ||||||
Sbjct: 11524556 atgtactcaataatgcagttctccttgagccattcgagcaccttcgctgcctctagaaca 11524497
Query: 281 tcctgaacctgc 292
||||||||||||
Sbjct: 11524496 tcctgaacctgc 11524485
>dbj|AP006054.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0417E03
Length = 133019
Score = 145 bits (73), Expect = 2e-31
Identities = 133/153 (86%)
Strand = Plus / Minus
Query: 385 ctgcaaattttcggccttgaatatttcaccaacaaccaacatttgtttaatgatcctagt 444
||||| |||||| ||||||||||||||||||||| ||||||||||||||||||| ||| |
Sbjct: 93259 ctgcagattttcagccttgaatatttcaccaacagccaacatttgtttaatgattctatt 93200
Query: 445 gatgttctccctctcggattttaggtactcctggaccgacttctcgcttgaaagggatgc 504
|| || || ||||| || |||||| ||||| || ||||| | |||||||||||||||
Sbjct: 93199 aatattttctctctcactttctaggtattcctgaactgacttttggcttgaaagggatgc 93140
Query: 505 tagctggtctttgtctagcttcctttctgcctg 537
||||||||||| ||||||||||||||||||||
Sbjct: 93139 cagctggtctttatctagcttcctttctgcctg 93107
Score = 111 bits (56), Expect = 3e-21
Identities = 92/104 (88%)
Strand = Plus / Minus
Query: 286 aacctgctgcttgatgttcccctcgtcgtagtcttgattatagcgtttgaactcttcaat 345
|||||||||||||||| ||||||| || ||||||||||||||| ||||||||||||| ||
Sbjct: 93475 aacctgctgcttgatgctcccctcatcatagtcttgattatagtgtttgaactcttctat 93416
Query: 346 ggagttctcaacttccttgacgagctggtctgtcgaatactgca 389
||||||||||||||||| || || || || |||||| ||||||
Sbjct: 93415 agagttctcaacttcctttaccagttgctcggtcgaaaactgca 93372
Score = 107 bits (54), Expect = 4e-20
Identities = 68/73 (93%)
Strand = Plus / Minus
Query: 534 cctgaagttgtanaagtttggctccatacaactgctggccttgttcttgaaacaaggaac 593
|||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 93039 cctggagttgtagaagtttggctccatacaactgctggccttgttcttgaaataaggctc 92980
Query: 594 gtggaacatcaac 606
|||||||||||||
Sbjct: 92979 gtggaacatcaac 92967
Score = 79.8 bits (40), Expect = 1e-11
Identities = 64/72 (88%)
Strand = Plus / Minus
Query: 221 atgtactcgatcgtgcagttctccttgagccactcaagcacctttgcagcctccagaaca 280
|||||||| || ||||||||||||||||||| || |||||||| || ||||| ||||||
Sbjct: 93799 atgtactcaataatgcagttctccttgagccattcgagcaccttcgctgcctctagaaca 93740
Query: 281 tcctgaacctgc 292
||||||||||||
Sbjct: 93739 tcctgaacctgc 93728
>dbj|AP005852.2 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0414E10
Length = 141760
Score = 145 bits (73), Expect = 2e-31
Identities = 133/153 (86%)
Strand = Plus / Minus
Query: 385 ctgcaaattttcggccttgaatatttcaccaacaaccaacatttgtttaatgatcctagt 444
||||| |||||| ||||||||||||||||||||| ||||||||||||||||||| ||| |
Sbjct: 1902 ctgcagattttcagccttgaatatttcaccaacagccaacatttgtttaatgattctatt 1843
Query: 445 gatgttctccctctcggattttaggtactcctggaccgacttctcgcttgaaagggatgc 504
|| || || ||||| || |||||| ||||| || ||||| | |||||||||||||||
Sbjct: 1842 aatattttctctctcactttctaggtattcctgaactgacttttggcttgaaagggatgc 1783
Query: 505 tagctggtctttgtctagcttcctttctgcctg 537
||||||||||| ||||||||||||||||||||
Sbjct: 1782 cagctggtctttatctagcttcctttctgcctg 1750
Score = 111 bits (56), Expect = 3e-21
Identities = 92/104 (88%)
Strand = Plus / Minus
Query: 286 aacctgctgcttgatgttcccctcgtcgtagtcttgattatagcgtttgaactcttcaat 345
|||||||||||||||| ||||||| || ||||||||||||||| ||||||||||||| ||
Sbjct: 2118 aacctgctgcttgatgctcccctcatcatagtcttgattatagtgtttgaactcttctat 2059
Query: 346 ggagttctcaacttccttgacgagctggtctgtcgaatactgca 389
||||||||||||||||| || || || || |||||| ||||||
Sbjct: 2058 agagttctcaacttcctttaccagttgctcggtcgaaaactgca 2015
Score = 107 bits (54), Expect = 4e-20
Identities = 68/73 (93%)
Strand = Plus / Minus
Query: 534 cctgaagttgtanaagtttggctccatacaactgctggccttgttcttgaaacaaggaac 593
|||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 1682 cctggagttgtagaagtttggctccatacaactgctggccttgttcttgaaataaggctc 1623
Query: 594 gtggaacatcaac 606
|||||||||||||
Sbjct: 1622 gtggaacatcaac 1610
Score = 79.8 bits (40), Expect = 1e-11
Identities = 64/72 (88%)
Strand = Plus / Minus
Query: 221 atgtactcgatcgtgcagttctccttgagccactcaagcacctttgcagcctccagaaca 280
|||||||| || ||||||||||||||||||| || |||||||| || ||||| ||||||
Sbjct: 2442 atgtactcaataatgcagttctccttgagccattcgagcaccttcgctgcctctagaaca 2383
Query: 281 tcctgaacctgc 292
||||||||||||
Sbjct: 2382 tcctgaacctgc 2371
>gb|L47617.2 |VIBPATM Vibrio harveyi ribosomal protein L34 (rpmH) gene, partial cds;
ATP-binding protein (patP), membrane protein (patM),
binding protein precursor (patH), and DnaA (dnaA) genes,
complete cds; and DNA polymerase III holoenzyme beta
subunit gene, partial cds
Length = 4896
Score = 40.1 bits (20), Expect = 8.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 326 tagcgtttgaactcttcaat 345
||||||||||||||||||||
Sbjct: 3667 tagcgtttgaactcttcaat 3648
>dbj|AP002893.3 | Homo sapiens genomic DNA, chromosome 11q clone:RP11-624G17, complete
sequence
Length = 178000
Score = 40.1 bits (20), Expect = 8.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 566 tgctggccttgttcttgaaa 585
||||||||||||||||||||
Sbjct: 97768 tgctggccttgttcttgaaa 97749
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,296,272
Number of Sequences: 3902068
Number of extensions: 5296272
Number of successful extensions: 95874
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95737
Number of HSP's gapped (non-prelim): 133
length of query: 631
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 608
effective length of database: 17,143,297,704
effective search space: 10423125004032
effective search space used: 10423125004032
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)