ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd19h15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK099680.1| Oryza sativa (japonica cultivar-group) cDNA clon... 416 e-113
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 145 2e-31
3dbj|AP006054.3| Oryza sativa (japonica cultivar-group) genomic D... 145 2e-31
4dbj|AP005852.2| Oryza sativa (japonica cultivar-group) genomic D... 145 2e-31
5gb|AC127170.11| Medicago truncatula clone mth2-35d10, complete s... 46 0.14
6gb|AC160012.1| Medicago truncatula chromosome 2 BAC clone mth2-1... 46 0.14
7emb|Y10237.1|LCCVORFS Little cherry virus 1 ORF's 1-8, genomic RNA 46 0.14
8ref|XM_676576.1| Aspergillus nidulans FGSC A4 hypothetical prote... 44 0.55
9emb|CR956621.10| Pig DNA sequence from clone CH242-201E3 on chro... 44 0.55
10emb|CR925759.7| Wallaby DNA sequence from clone MEKBa-346C2, com... 42 2.2
11gb|AC007298.17| Homo sapiens 12q22 BAC RPCI11-256L6 (Roswell Par... 40 8.6
12emb|AL590080.25| Human DNA sequence from clone RP11-469M1 on chr... 40 8.6
13emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, ... 40 8.6
14gb|L47617.2|VIBPATM Vibrio harveyi ribosomal protein L34 (rpmH) ... 40 8.6
15ref|NM_078745.2| Drosophila melanogaster echinoid CG12676-RA (ed... 40 8.6
16gb|AC018478.4| Drosophila melanogaster, chromosome 4, region 101... 40 8.6
17gb|AC010668.7| Drosophila melanogaster, chromosome 4, region 101... 40 8.6
18gb|AY051656.1| Drosophila melanogaster LD11008 full length cDNA 40 8.6
19dbj|AK017906.1| Mus musculus adult male thymus cDNA, RIKEN full-... 40 8.6
20dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
21gb|AC008003.8|AC008003 Drosophila melanogaster, chromosome 2L, r... 40 8.6
22gb|AF275903.1|AF275903 Drosophila melanogaster echinoid (ed) mRN... 40 8.6
23dbj|BA000031.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromo... 40 8.6
24emb|AL845457.16| Mouse DNA sequence from clone RP23-34E24 on chr... 40 8.6
25emb|AL935207.6| Zebrafish DNA sequence from clone CH211-251J8, c... 40 8.6
26dbj|AP006532.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
27gb|AE003577.4| Drosophila melanogaster chromosome 2L, section 14... 40 8.6
28dbj|AP005503.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
29gb|AE003843.5| Drosophila melanogaster chromosome 4, section 3 o... 40 8.6
30emb|AL590449.1|CNS07EGG chromosome X of strain GB-M1 of Encephal... 40 8.6
31gb|AC148919.1| Gallus gallus BAC clone CH261-43B19 from chromoso... 40 8.6
32dbj|AP002893.3| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 8.6

>dbj|AK099680.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071B03, full
            insert sequence
          Length = 1915

 Score =  416 bits (210), Expect = e-113
 Identities = 353/401 (88%)
 Strand = Plus / Minus

                                                                        
Query: 221  atgtactcgatcgtgcagttctccttgagccactcaagcacctttgcagcctccagaaca 280
            |||||||| ||  ||||||||||||||||||| || |||||||| || ||||| ||||||
Sbjct: 1625 atgtactcaataatgcagttctccttgagccattcgagcaccttcgctgcctctagaaca 1566

                                                                        
Query: 281  tcctgaacctgctgcttgatgttcccctcgtcgtagtcttgattatagcgtttgaactct 340
            ||||||||||||||||||||| ||||||| || ||||||||||||||| |||||||||||
Sbjct: 1565 tcctgaacctgctgcttgatgctcccctcatcatagtcttgattatagtgtttgaactct 1506

                                                                        
Query: 341  tcaatggagttctcaacttccttgacgagctggtctgtcgaatactgcaaattttcggcc 400
            || || ||||||||||||||||| || || || || |||||| |||||| |||||| |||
Sbjct: 1505 tctatagagttctcaacttcctttaccagttgctcggtcgaaaactgcagattttcagcc 1446

                                                                        
Query: 401  ttgaatatttcaccaacaaccaacatttgtttaatgatcctagtgatgttctccctctcg 460
            |||||||||||||||||| ||||||||||||||||||| ||| | || || || ||||| 
Sbjct: 1445 ttgaatatttcaccaacagccaacatttgtttaatgattctattaatattttctctctca 1386

                                                                        
Query: 461  gattttaggtactcctggaccgacttctcgcttgaaagggatgctagctggtctttgtct 520
              || |||||| ||||| || ||||| | ||||||||||||||| ||||||||||| |||
Sbjct: 1385 ctttctaggtattcctgaactgacttttggcttgaaagggatgccagctggtctttatct 1326

                                                                        
Query: 521  agcttcctttctgcctgaagttgtanaagtttggctccatacaactgctggccttgttct 580
            ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1325 agcttcctttctgcctggagttgtagaagtttggctccatacaactgctggccttgttct 1266

                                                     
Query: 581  tgaaacaaggaacgtggaacatcaacatctaccaactttcc 621
            ||||| ||||  |||||||||||||| || || ||||||||
Sbjct: 1265 tgaaataaggctcgtggaacatcaacttcaactaactttcc 1225



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  145 bits (73), Expect = 2e-31
 Identities = 133/153 (86%)
 Strand = Plus / Minus

                                                                            
Query: 385      ctgcaaattttcggccttgaatatttcaccaacaaccaacatttgtttaatgatcctagt 444
                ||||| |||||| ||||||||||||||||||||| ||||||||||||||||||| ||| |
Sbjct: 11524016 ctgcagattttcagccttgaatatttcaccaacagccaacatttgtttaatgattctatt 11523957

                                                                            
Query: 445      gatgttctccctctcggattttaggtactcctggaccgacttctcgcttgaaagggatgc 504
                 || || || |||||   || |||||| ||||| || ||||| | |||||||||||||||
Sbjct: 11523956 aatattttctctctcactttctaggtattcctgaactgacttttggcttgaaagggatgc 11523897

                                                 
Query: 505      tagctggtctttgtctagcttcctttctgcctg 537
                 ||||||||||| ||||||||||||||||||||
Sbjct: 11523896 cagctggtctttatctagcttcctttctgcctg 11523864



 Score =  111 bits (56), Expect = 3e-21
 Identities = 92/104 (88%)
 Strand = Plus / Minus

                                                                            
Query: 286      aacctgctgcttgatgttcccctcgtcgtagtcttgattatagcgtttgaactcttcaat 345
                |||||||||||||||| ||||||| || ||||||||||||||| ||||||||||||| ||
Sbjct: 11524232 aacctgctgcttgatgctcccctcatcatagtcttgattatagtgtttgaactcttctat 11524173

                                                            
Query: 346      ggagttctcaacttccttgacgagctggtctgtcgaatactgca 389
                 ||||||||||||||||| || || || || |||||| ||||||
Sbjct: 11524172 agagttctcaacttcctttaccagttgctcggtcgaaaactgca 11524129



 Score =  107 bits (54), Expect = 4e-20
 Identities = 68/73 (93%)
 Strand = Plus / Minus

                                                                            
Query: 534      cctgaagttgtanaagtttggctccatacaactgctggccttgttcttgaaacaaggaac 593
                |||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||  |
Sbjct: 11523796 cctggagttgtagaagtttggctccatacaactgctggccttgttcttgaaataaggctc 11523737

                             
Query: 594      gtggaacatcaac 606
                |||||||||||||
Sbjct: 11523736 gtggaacatcaac 11523724



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 64/72 (88%)
 Strand = Plus / Minus

                                                                            
Query: 221      atgtactcgatcgtgcagttctccttgagccactcaagcacctttgcagcctccagaaca 280
                |||||||| ||  ||||||||||||||||||| || |||||||| || ||||| ||||||
Sbjct: 11524556 atgtactcaataatgcagttctccttgagccattcgagcaccttcgctgcctctagaaca 11524497

                            
Query: 281      tcctgaacctgc 292
                ||||||||||||
Sbjct: 11524496 tcctgaacctgc 11524485



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>dbj|AP006054.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0417E03
          Length = 133019

 Score =  145 bits (73), Expect = 2e-31
 Identities = 133/153 (86%)
 Strand = Plus / Minus

                                                                         
Query: 385   ctgcaaattttcggccttgaatatttcaccaacaaccaacatttgtttaatgatcctagt 444
             ||||| |||||| ||||||||||||||||||||| ||||||||||||||||||| ||| |
Sbjct: 93259 ctgcagattttcagccttgaatatttcaccaacagccaacatttgtttaatgattctatt 93200

                                                                         
Query: 445   gatgttctccctctcggattttaggtactcctggaccgacttctcgcttgaaagggatgc 504
              || || || |||||   || |||||| ||||| || ||||| | |||||||||||||||
Sbjct: 93199 aatattttctctctcactttctaggtattcctgaactgacttttggcttgaaagggatgc 93140

                                              
Query: 505   tagctggtctttgtctagcttcctttctgcctg 537
              ||||||||||| ||||||||||||||||||||
Sbjct: 93139 cagctggtctttatctagcttcctttctgcctg 93107



 Score =  111 bits (56), Expect = 3e-21
 Identities = 92/104 (88%)
 Strand = Plus / Minus

                                                                         
Query: 286   aacctgctgcttgatgttcccctcgtcgtagtcttgattatagcgtttgaactcttcaat 345
             |||||||||||||||| ||||||| || ||||||||||||||| ||||||||||||| ||
Sbjct: 93475 aacctgctgcttgatgctcccctcatcatagtcttgattatagtgtttgaactcttctat 93416

                                                         
Query: 346   ggagttctcaacttccttgacgagctggtctgtcgaatactgca 389
              ||||||||||||||||| || || || || |||||| ||||||
Sbjct: 93415 agagttctcaacttcctttaccagttgctcggtcgaaaactgca 93372



 Score =  107 bits (54), Expect = 4e-20
 Identities = 68/73 (93%)
 Strand = Plus / Minus

                                                                         
Query: 534   cctgaagttgtanaagtttggctccatacaactgctggccttgttcttgaaacaaggaac 593
             |||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||  |
Sbjct: 93039 cctggagttgtagaagtttggctccatacaactgctggccttgttcttgaaataaggctc 92980

                          
Query: 594   gtggaacatcaac 606
             |||||||||||||
Sbjct: 92979 gtggaacatcaac 92967



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 64/72 (88%)
 Strand = Plus / Minus

                                                                         
Query: 221   atgtactcgatcgtgcagttctccttgagccactcaagcacctttgcagcctccagaaca 280
             |||||||| ||  ||||||||||||||||||| || |||||||| || ||||| ||||||
Sbjct: 93799 atgtactcaataatgcagttctccttgagccattcgagcaccttcgctgcctctagaaca 93740

                         
Query: 281   tcctgaacctgc 292
             ||||||||||||
Sbjct: 93739 tcctgaacctgc 93728



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>dbj|AP005852.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0414E10
          Length = 141760

 Score =  145 bits (73), Expect = 2e-31
 Identities = 133/153 (86%)
 Strand = Plus / Minus

                                                                        
Query: 385  ctgcaaattttcggccttgaatatttcaccaacaaccaacatttgtttaatgatcctagt 444
            ||||| |||||| ||||||||||||||||||||| ||||||||||||||||||| ||| |
Sbjct: 1902 ctgcagattttcagccttgaatatttcaccaacagccaacatttgtttaatgattctatt 1843

                                                                        
Query: 445  gatgttctccctctcggattttaggtactcctggaccgacttctcgcttgaaagggatgc 504
             || || || |||||   || |||||| ||||| || ||||| | |||||||||||||||
Sbjct: 1842 aatattttctctctcactttctaggtattcctgaactgacttttggcttgaaagggatgc 1783

                                             
Query: 505  tagctggtctttgtctagcttcctttctgcctg 537
             ||||||||||| ||||||||||||||||||||
Sbjct: 1782 cagctggtctttatctagcttcctttctgcctg 1750



 Score =  111 bits (56), Expect = 3e-21
 Identities = 92/104 (88%)
 Strand = Plus / Minus

                                                                        
Query: 286  aacctgctgcttgatgttcccctcgtcgtagtcttgattatagcgtttgaactcttcaat 345
            |||||||||||||||| ||||||| || ||||||||||||||| ||||||||||||| ||
Sbjct: 2118 aacctgctgcttgatgctcccctcatcatagtcttgattatagtgtttgaactcttctat 2059

                                                        
Query: 346  ggagttctcaacttccttgacgagctggtctgtcgaatactgca 389
             ||||||||||||||||| || || || || |||||| ||||||
Sbjct: 2058 agagttctcaacttcctttaccagttgctcggtcgaaaactgca 2015



 Score =  107 bits (54), Expect = 4e-20
 Identities = 68/73 (93%)
 Strand = Plus / Minus

                                                                        
Query: 534  cctgaagttgtanaagtttggctccatacaactgctggccttgttcttgaaacaaggaac 593
            |||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||  |
Sbjct: 1682 cctggagttgtagaagtttggctccatacaactgctggccttgttcttgaaataaggctc 1623

                         
Query: 594  gtggaacatcaac 606
            |||||||||||||
Sbjct: 1622 gtggaacatcaac 1610



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 64/72 (88%)
 Strand = Plus / Minus

                                                                        
Query: 221  atgtactcgatcgtgcagttctccttgagccactcaagcacctttgcagcctccagaaca 280
            |||||||| ||  ||||||||||||||||||| || |||||||| || ||||| ||||||
Sbjct: 2442 atgtactcaataatgcagttctccttgagccattcgagcaccttcgctgcctctagaaca 2383

                        
Query: 281  tcctgaacctgc 292
            ||||||||||||
Sbjct: 2382 tcctgaacctgc 2371



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>gb|AC127170.11| Medicago truncatula clone mth2-35d10, complete sequence
          Length = 114143

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 421   caacatttgtttaatgatcctag 443
             |||||||||||||||||||||||
Sbjct: 91390 caacatttgtttaatgatcctag 91368



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>gb|AC160012.1| Medicago truncatula chromosome 2 BAC clone mth2-168l8, complete sequence
          Length = 145061

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 421    caacatttgtttaatgatcctag 443
              |||||||||||||||||||||||
Sbjct: 144216 caacatttgtttaatgatcctag 144194



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>emb|Y10237.1|LCCVORFS Little cherry virus 1 ORF's 1-8, genomic RNA
          Length = 16934

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 334  gaactcttcaatggagttctcaacttc 360
            |||||||| ||||||||||||||||||
Sbjct: 5725 gaactcttgaatggagttctcaacttc 5699



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>ref|XM_676576.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN8399.2), mRNA
          Length = 3351

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 506  agctggtctttgtctagcttcc 527
            ||||||||||||||||||||||
Sbjct: 2312 agctggtctttgtctagcttcc 2291



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>emb|CR956621.10| Pig DNA sequence from clone CH242-201E3 on chromosome 17, complete
             sequence
          Length = 83594

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 507   gctggtctttgtctagcttcctttct 532
             |||||| |||||||||||||||||||
Sbjct: 57557 gctggtatttgtctagcttcctttct 57532



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>emb|CR925759.7| Wallaby DNA sequence from clone MEKBa-346C2, complete sequence
          Length = 146757

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 497    agggatgctagctggtctttg 517
              |||||||||||||||||||||
Sbjct: 139151 agggatgctagctggtctttg 139171



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>gb|AC007298.17| Homo sapiens 12q22 BAC RPCI11-256L6 (Roswell Park Cancer Institute Human
              BAC Library) complete sequence
          Length = 201572

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 560    tacaactgctggccttgttc 579
              ||||||||||||||||||||
Sbjct: 133830 tacaactgctggccttgttc 133811



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>emb|AL590080.25| Human DNA sequence from clone RP11-469M1 on chromosome 10 Contains the
              HHEX gene for hematopoietically expressed homeobox, the 5'
              end of the gene for SEC15 (S. cerevisiae)-like (SEC15L), a
              eukaryotic translation initiation factor 2 subunit 2
              (eIF-2-beta) pseudogene and four CpG islands, complete
              sequence
          Length = 190144

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 67     cttgacatctacatgtaaac 86
              ||||||||||||||||||||
Sbjct: 112015 cttgacatctacatgtaaac 111996



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>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome
          Length = 5064019

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 326     tagcgtttgaactcttcaat 345
               ||||||||||||||||||||
Sbjct: 4984429 tagcgtttgaactcttcaat 4984448



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>gb|L47617.2|VIBPATM Vibrio harveyi ribosomal protein L34 (rpmH) gene, partial cds;
            ATP-binding protein (patP), membrane protein (patM),
            binding protein precursor (patH), and DnaA (dnaA) genes,
            complete cds; and DNA polymerase III holoenzyme beta
            subunit gene, partial cds
          Length = 4896

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 326  tagcgtttgaactcttcaat 345
            ||||||||||||||||||||
Sbjct: 3667 tagcgtttgaactcttcaat 3648



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>ref|NM_078745.2| Drosophila melanogaster echinoid CG12676-RA (ed), mRNA
          Length = 5686

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 238  gttctccttgagccactcaa 257
            ||||||||||||||||||||
Sbjct: 1558 gttctccttgagccactcaa 1539



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>gb|AC018478.4| Drosophila melanogaster, chromosome 4, region 101F-102F, BAC clone
             BACH57F14, complete sequence
          Length = 103809

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 54    cttatagagcaaacttgaca 73
             ||||||||||||||||||||
Sbjct: 86851 cttatagagcaaacttgaca 86832



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>gb|AC010668.7| Drosophila melanogaster, chromosome 4, region 101F-102F, BAC clone
             BACR44L03, complete sequence
          Length = 172190

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 54    cttatagagcaaacttgaca 73
             ||||||||||||||||||||
Sbjct: 26641 cttatagagcaaacttgaca 26622



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>gb|AY051656.1| Drosophila melanogaster LD11008 full length cDNA
          Length = 4188

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 238 gttctccttgagccactcaa 257
           ||||||||||||||||||||
Sbjct: 531 gttctccttgagccactcaa 512



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>dbj|AK017906.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched
           library, clone:5830407F19 product:unclassifiable, full
           insert sequence
          Length = 1835

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 511 gtctttgtctagcttccttt 530
           ||||||||||||||||||||
Sbjct: 534 gtctttgtctagcttccttt 553



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 250      ccactcaagcacctttgcag 269
                ||||||||||||||||||||
Sbjct: 11051967 ccactcaagcacctttgcag 11051986



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>gb|AC008003.8|AC008003 Drosophila melanogaster, chromosome 2L, region 24D-24D, BAC clone
              BACR48D02, complete sequence
          Length = 181728

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 238    gttctccttgagccactcaa 257
              ||||||||||||||||||||
Sbjct: 146188 gttctccttgagccactcaa 146169



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>gb|AF275903.1|AF275903 Drosophila melanogaster echinoid (ed) mRNA, complete cds
          Length = 5201

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 238  gttctccttgagccactcaa 257
            ||||||||||||||||||||
Sbjct: 1552 gttctccttgagccactcaa 1533



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>dbj|BA000031.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 1, complete
            sequence
          Length = 3288558

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 326  tagcgtttgaactcttcaat 345
            ||||||||||||||||||||
Sbjct: 8356 tagcgtttgaactcttcaat 8337



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>emb|AL845457.16| Mouse DNA sequence from clone RP23-34E24 on chromosome 2, complete
              sequence
          Length = 221009

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 511    gtctttgtctagcttccttt 530
              ||||||||||||||||||||
Sbjct: 145526 gtctttgtctagcttccttt 145507



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>emb|AL935207.6| Zebrafish DNA sequence from clone CH211-251J8, complete sequence
          Length = 146351

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 154   agagagagtttgcacgcctgccat 177
             |||||||||||||| |||||||||
Sbjct: 50660 agagagagtttgcaagcctgccat 50637



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>dbj|AP006532.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1446H11
          Length = 135488

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 250   ccactcaagcacctttgcag 269
             ||||||||||||||||||||
Sbjct: 22573 ccactcaagcacctttgcag 22592



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>gb|AE003577.4| Drosophila melanogaster chromosome 2L, section 14 of 83 of the complete
             sequence
          Length = 290034

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 238   gttctccttgagccactcaa 257
             ||||||||||||||||||||
Sbjct: 66948 gttctccttgagccactcaa 66929



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>dbj|AP005503.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0560B10, complete sequence
          Length = 108295

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 250   ccactcaagcacctttgcag 269
             ||||||||||||||||||||
Sbjct: 10483 ccactcaagcacctttgcag 10502



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>gb|AE003843.5| Drosophila melanogaster chromosome 4, section 3 of 5 of the complete
             sequence
          Length = 328561

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 54    cttatagagcaaacttgaca 73
             ||||||||||||||||||||
Sbjct: 72970 cttatagagcaaacttgaca 72951



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>emb|AL590449.1|CNS07EGG chromosome X of strain GB-M1 of Encephalitozoon cuniculi (Microspora)
          Length = 262797

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 89     gacctctctcttgtgtgtgctata 112
              |||||||||||||| |||||||||
Sbjct: 224803 gacctctctcttgtatgtgctata 224780



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>gb|AC148919.1| Gallus gallus BAC clone CH261-43B19 from chromosome unknown, complete
              sequence
          Length = 163278

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 9      ttgtttatgatatttgagct 28
              ||||||||||||||||||||
Sbjct: 135889 ttgtttatgatatttgagct 135870



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>dbj|AP002893.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-624G17, complete
             sequence
          Length = 178000

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 566   tgctggccttgttcttgaaa 585
             ||||||||||||||||||||
Sbjct: 97768 tgctggccttgttcttgaaa 97749


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,296,272
Number of Sequences: 3902068
Number of extensions: 5296272
Number of successful extensions: 95874
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95737
Number of HSP's gapped (non-prelim): 133
length of query: 631
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 608
effective length of database: 17,143,297,704
effective search space: 10423125004032
effective search space used: 10423125004032
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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