ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd19h12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_550073.1| Oryza sativa (japonica cultivar-group), mRNA 327 3e-86
2dbj|AK073130.1| Oryza sativa (japonica cultivar-group) cDNA clon... 327 3e-86
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 155 2e-34
4dbj|AP002913.1| Oryza sativa (japonica cultivar-group) genomic D... 155 2e-34
5gb|AY325816.1| Zea mays BAC clone Z013I05, complete sequence 80 1e-11
6gb|AF165891.1|AF165891 Vigna unguiculata phosphatidic acid phosp... 74 7e-10
7emb|CR931729.2| Medicago truncatula chromosome 5 clone mte1-82a1... 52 0.002
8ref|NM_111128.1| Arabidopsis thaliana LPP3; phosphatidate phosph... 50 0.010
9gb|AY084915.1| Arabidopsis thaliana clone 121374 mRNA, complete ... 50 0.010
10gb|DQ317319.1| Musa acuminata putative phosphaticid acid phospha... 48 0.039
11gb|AY601242.1| Allagoptera leucocalyx clone A1 phosphoribulokina... 44 0.61
12ref|NM_192159.1| Oryza sativa (japonica cultivar-group), predic... 44 0.61
13dbj|AK101201.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.61
14dbj|AP006431.1| Lotus japonicus genomic DNA, chromosome 5, clone... 44 0.61
15gb|AC113300.7| Mus musculus chromosome 5, clone RP23-430C4, comp... 42 2.4
16emb|CR954256.1| Anopheles gambiae Pen-1 region; BAC clones 30N20... 42 2.4
17emb|AL590624.8| Human DNA sequence from clone RP11-380B22 on chr... 42 2.4
18gb|AC173914.3| Nomascus leucogenys leucogenys clone CH271-445J13... 42 2.4
19dbj|AP003309.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
20dbj|AP003560.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
21gb|AF003528.1|AF003528 Homo sapiens X-linked anhidroitic ectoder... 42 2.4
22ref|XM_519780.1| PREDICTED: Pan troglodytes chromodomain helicas... 40 9.5
23gb|DP000016.1| Pan troglodytes target 1 genomic scaffold 40 9.5
24gb|AY307175.1| Ichthyomyzon unicuspis preprogonadotropin-releasi... 40 9.5
25gb|AC145405.3| Gorilla gorilla gorilla clone CH255-421A19, compl... 40 9.5
26ref|XM_584090.2| PREDICTED: Bos taurus similar to centrosomal pr... 40 9.5
27ref|NM_017780.2| Homo sapiens chromodomain helicase DNA binding ... 40 9.5
28gb|AC087730.2| Pan troglodytes clone RP43-89H17, complete sequence 40 9.5
29gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 9.5
30gb|AC002465.1| Homo sapiens BAC clone CTA-343P13 from 7, complet... 40 9.5
31ref|XM_544097.2| PREDICTED: Canis familiaris KIAA1416, transcrip... 40 9.5
32gb|AY524778.1| Homo sapiens phospholipase A2, group V (PLA2G5) g... 40 9.5
33ref|XM_973617.1| PREDICTED: Mus musculus chromodomain helicase D... 40 9.5
34ref|XM_973577.1| PREDICTED: Mus musculus chromodomain helicase D... 40 9.5
35ref|XM_905428.2| PREDICTED: Mus musculus chromodomain helicase D... 40 9.5
36ref|XM_985866.1| PREDICTED: Mus musculus chromodomain helicase D... 40 9.5
37emb|CT009484.8| M.truncatula DNA sequence from clone MTH2-69D3 o... 40 9.5
38gb|AC122450.4| Mus musculus BAC clone RP24-249K4 from chromosome... 40 9.5
39ref|XM_726335.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 9.5
40gb|AC135415.27| Medicago truncatula clone mth2-10b9, complete se... 40 9.5
41emb|AL158172.5| Human DNA sequence from clone RP1-169O23 on chro... 40 9.5
42emb|AL136991.26| Human DNA sequence from clone RP11-189J1 on chr... 40 9.5
43dbj|AK123158.1| Homo sapiens cDNA FLJ41163 fis, clone BRACE2039734 40 9.5
44gb|AC113143.3| Homo sapiens chromosome 8, clone RP11-33I11, comp... 40 9.5
45gb|AF386920.1| Bovine rotavirus strain B8 outer capsid protein V... 40 9.5
46gb|AC019215.4|AC019215 Homo sapiens BAC clone RP11-480M18 from 8... 40 9.5
47gb|AC091388.1|AC091388 Drosophila melanogaster, chromosome 2R, r... 40 9.5
48dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.5
49gb|DP000025.1| Gorilla gorilla gorilla target 1 genomic scaffold 40 9.5
50gb|AC104487.3| Oryza sativa chromosome 3 BAC OSJNBa0042I09 genom... 40 9.5
51ref|XM_232671.3| PREDICTED: Rattus norvegicus chromodomain helic... 40 9.5
52emb|BX648966.1|HSM809117 Homo sapiens mRNA; cDNA DKFZp686C2294 (... 40 9.5
53gb|AY108542.1| Zea mays PCO117551 mRNA sequence 40 9.5
54gb|AE003837.3| Drosophila melanogaster chromosome 2R, section 13... 40 9.5
55gb|AC006421.1|AC006421 Drosophila melanogaster, chromosome 2R, r... 40 9.5
56dbj|D14033.1|ROHVP7P Human rotavirus gene for VP7 protein, compl... 40 9.5
57gb|AC171013.3| Gallus gallus BAC clone CH261-71N5 from chromosom... 40 9.5
58emb|AL805903.12| Mouse DNA sequence from clone RP23-464N23 on ch... 40 9.5
59emb|AL844891.7| Mouse DNA sequence from clone RP23-350N21 on chr... 40 9.5
60emb|AL606908.10| Mouse DNA sequence from clone RP23-273D6 on chr... 40 9.5 
>ref|XM_550073.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1578

 Score =  327 bits (165), Expect = 3e-86
 Identities = 336/393 (85%)
 Strand = Plus / Minus

                                                                        
Query: 300  aagctcctccagcatgtggaagtatgcatagggcccccagccttgatggtgatatggagg 359
            ||||||||| ||||| |||||||||||||| || ||||| |||||||| || ||||||||
Sbjct: 1155 aagctcctcaagcatatggaagtatgcatacggtccccaaccttgatgatggtatggagg 1096

                                                                        
Query: 360  aggaaagaagtgcaaatagcacagcactgccacgatatatccaatcaggccaccgacaaa 419
             |||||||||||||| || || ||||  |||| |||| |||| |  ||||| ||  ||||
Sbjct: 1095 tggaaagaagtgcaagtaacagagcatcgccatgataaatcctagtaggccgccagcaaa 1036

                                                                        
Query: 420  cacgtcctcccagtggtgtcgatagttgtctattctagaaatcccaacaagtgaagcgag 479
            ||| ||||||||||||||||||||||  ||||||||||||||||| || |||||||| | 
Sbjct: 1035 cacatcctcccagtggtgtcgatagtcatctattctagaaatcccgacgagtgaagcaat 976

                                                                        
Query: 480  aagtagaggaagaatcacgatgcaaagctttgccacgtgacctttgcgatcaaatgcctg 539
            ||| || ||||||||||  |||||||| || || || ||||||| |||||||||  ||| 
Sbjct: 975  aagaaggggaagaatcataatgcaaagtttggcaacatgaccttggcgatcaaacacctt 916

                                                                        
Query: 540  aattttgccagataagtatagtgacaaaaacccaaatccagcaaaagaccacgacgtgtg 599
            |||||||||||||| ||| ||||||| ||| |||| ||||||||||||||||||||||||
Sbjct: 915  aattttgccagataggtagagtgacagaaatccaagtccagcaaaagaccacgacgtgtg 856

                                                                        
Query: 600  tccactaggaaaactcttgcgcccatcggttaagaaacctttcttgccatggcaaatcac 659
            ||||||||||||||||||||| |||||  ||||||| | |||||  ||||| ||||||||
Sbjct: 855  tccactaggaaaactcttgcgtccatcctttaagaagcttttctctccatgacaaatcac 796

                                             
Query: 660  accaccagtcacttgatcatatacctgccttcc 692
            | |||| |||||||||||||||| |||| ||||
Sbjct: 795  atcacctgtcacttgatcatataactgctttcc 763
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>dbj|AK073130.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033011L13, full
            insert sequence
          Length = 1578

 Score =  327 bits (165), Expect = 3e-86
 Identities = 336/393 (85%)
 Strand = Plus / Minus

                                                                        
Query: 300  aagctcctccagcatgtggaagtatgcatagggcccccagccttgatggtgatatggagg 359
            ||||||||| ||||| |||||||||||||| || ||||| |||||||| || ||||||||
Sbjct: 1155 aagctcctcaagcatatggaagtatgcatacggtccccaaccttgatgatggtatggagg 1096

                                                                        
Query: 360  aggaaagaagtgcaaatagcacagcactgccacgatatatccaatcaggccaccgacaaa 419
             |||||||||||||| || || ||||  |||| |||| |||| |  ||||| ||  ||||
Sbjct: 1095 tggaaagaagtgcaagtaacagagcatcgccatgataaatcctagtaggccgccagcaaa 1036

                                                                        
Query: 420  cacgtcctcccagtggtgtcgatagttgtctattctagaaatcccaacaagtgaagcgag 479
            ||| ||||||||||||||||||||||  ||||||||||||||||| || |||||||| | 
Sbjct: 1035 cacatcctcccagtggtgtcgatagtcatctattctagaaatcccgacgagtgaagcaat 976

                                                                        
Query: 480  aagtagaggaagaatcacgatgcaaagctttgccacgtgacctttgcgatcaaatgcctg 539
            ||| || ||||||||||  |||||||| || || || ||||||| |||||||||  ||| 
Sbjct: 975  aagaaggggaagaatcataatgcaaagtttggcaacatgaccttggcgatcaaacacctt 916

                                                                        
Query: 540  aattttgccagataagtatagtgacaaaaacccaaatccagcaaaagaccacgacgtgtg 599
            |||||||||||||| ||| ||||||| ||| |||| ||||||||||||||||||||||||
Sbjct: 915  aattttgccagataggtagagtgacagaaatccaagtccagcaaaagaccacgacgtgtg 856

                                                                        
Query: 600  tccactaggaaaactcttgcgcccatcggttaagaaacctttcttgccatggcaaatcac 659
            ||||||||||||||||||||| |||||  ||||||| | |||||  ||||| ||||||||
Sbjct: 855  tccactaggaaaactcttgcgtccatcctttaagaagcttttctctccatgacaaatcac 796

                                             
Query: 660  accaccagtcacttgatcatatacctgccttcc 692
            | |||| |||||||||||||||| |||| ||||
Sbjct: 795  atcacctgtcacttgatcatataactgctttcc 763
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  155 bits (78), Expect = 2e-34
 Identities = 150/174 (86%)
 Strand = Plus / Minus

                                                                           
Query: 416     caaacacgtcctcccagtggtgtcgatagttgtctattctagaaatcccaacaagtgaag 475
               ||||||| ||||||||||||||||||||||  ||||||||||||||||| || |||||||
Sbjct: 2098959 caaacacatcctcccagtggtgtcgatagtcatctattctagaaatcccgacgagtgaag 2098900

                                                                           
Query: 476     cgagaagtagaggaagaatcacgatgcaaagctttgccacgtgacctttgcgatcaaatg 535
               | | ||| || ||||||||||  |||||||| || || || ||||||| |||||||||  
Sbjct: 2098899 caataagaaggggaagaatcataatgcaaagtttggcaacatgaccttggcgatcaaaca 2098840

                                                                     
Query: 536     cctgaattttgccagataagtatagtgacaaaaacccaaatccagcaaaagacc 589
               ||| |||||||||||||| ||| ||||||| ||| |||| ||||||||||||||
Sbjct: 2098839 ccttaattttgccagataggtagagtgacagaaatccaagtccagcaaaagacc 2098786



 Score =  107 bits (54), Expect = 5e-20
 Identities = 84/94 (89%)
 Strand = Plus / Minus

                                                                           
Query: 589     cacgacgtgtgtccactaggaaaactcttgcgcccatcggttaagaaacctttcttgcca 648
               |||||||||||||||||||||||||||||||| |||||  ||||||| | |||||  |||
Sbjct: 2098393 cacgacgtgtgtccactaggaaaactcttgcgtccatcctttaagaagcttttctctcca 2098334

                                                 
Query: 649     tggcaaatcacaccaccagtcacttgatcatata 682
               || ||||||||| |||| ||||||||||||||||
Sbjct: 2098333 tgacaaatcacatcacctgtcacttgatcatata 2098300



 Score = 48.1 bits (24), Expect = 0.039
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                           
Query: 300     aagctcctccagcatgtggaagtatgcatagggcccccagcctt 343
               ||||||||| ||||| |||||||||||||| || ||||| ||||
Sbjct: 2099271 aagctcctcaagcatatggaagtatgcatacggtccccaacctt 2099228



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                  
Query: 340     ccttgatggtgatatggaggaggaaagaagtgcaa 374
               |||||||| || |||||||| ||||||||||||||
Sbjct: 2099121 ccttgatgatggtatggaggtggaaagaagtgcaa 2099087



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 565      aaaaacccaaatccagcaaaa 585
                |||||||||||||||||||||
Sbjct: 30595833 aaaaacccaaatccagcaaaa 30595853
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>dbj|AP002913.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0480E02
          Length = 141862

 Score =  155 bits (78), Expect = 2e-34
 Identities = 150/174 (86%)
 Strand = Plus / Minus

                                                                         
Query: 416   caaacacgtcctcccagtggtgtcgatagttgtctattctagaaatcccaacaagtgaag 475
             ||||||| ||||||||||||||||||||||  ||||||||||||||||| || |||||||
Sbjct: 20071 caaacacatcctcccagtggtgtcgatagtcatctattctagaaatcccgacgagtgaag 20012

                                                                         
Query: 476   cgagaagtagaggaagaatcacgatgcaaagctttgccacgtgacctttgcgatcaaatg 535
             | | ||| || ||||||||||  |||||||| || || || ||||||| |||||||||  
Sbjct: 20011 caataagaaggggaagaatcataatgcaaagtttggcaacatgaccttggcgatcaaaca 19952

                                                                   
Query: 536   cctgaattttgccagataagtatagtgacaaaaacccaaatccagcaaaagacc 589
             ||| |||||||||||||| ||| ||||||| ||| |||| ||||||||||||||
Sbjct: 19951 ccttaattttgccagataggtagagtgacagaaatccaagtccagcaaaagacc 19898



 Score =  107 bits (54), Expect = 5e-20
 Identities = 84/94 (89%)
 Strand = Plus / Minus

                                                                         
Query: 589   cacgacgtgtgtccactaggaaaactcttgcgcccatcggttaagaaacctttcttgcca 648
             |||||||||||||||||||||||||||||||| |||||  ||||||| | |||||  |||
Sbjct: 19505 cacgacgtgtgtccactaggaaaactcttgcgtccatcctttaagaagcttttctctcca 19446

                                               
Query: 649   tggcaaatcacaccaccagtcacttgatcatata 682
             || ||||||||| |||| ||||||||||||||||
Sbjct: 19445 tgacaaatcacatcacctgtcacttgatcatata 19412



 Score = 48.1 bits (24), Expect = 0.039
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                         
Query: 300   aagctcctccagcatgtggaagtatgcatagggcccccagcctt 343
             ||||||||| ||||| |||||||||||||| || ||||| ||||
Sbjct: 20383 aagctcctcaagcatatggaagtatgcatacggtccccaacctt 20340



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 340   ccttgatggtgatatggaggaggaaagaagtgcaa 374
             |||||||| || |||||||| ||||||||||||||
Sbjct: 20233 ccttgatgatggtatggaggtggaaagaagtgcaa 20199
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>gb|AY325816.1| Zea mays BAC clone Z013I05, complete sequence
          Length = 152337

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 79/92 (85%)
 Strand = Plus / Minus

                                                                         
Query: 596   tgtgtccactaggaaaactcttgcgcccatcggttaagaaacctttcttgccatggcaaa 655
             |||| ||||||||||| ||||||||||||||   ||||||   |||||  ||||||||||
Sbjct: 57903 tgtggccactaggaaagctcttgcgcccatcttgtaagaagtttttctcaccatggcaaa 57844

                                             
Query: 656   tcacaccaccagtcacttgatcatatacctgc 687
             ||||| |||||||||||||||| |||| ||||
Sbjct: 57843 tcacatcaccagtcacttgatcgtataactgc 57812
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>gb|AF165891.1|AF165891 Vigna unguiculata phosphatidic acid phosphatase alpha mRNA, complete
            cds
          Length = 1485

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 169/213 (79%)
 Strand = Plus / Minus

                                                                        
Query: 406  aggccaccgacaaacacgtcctcccagtggtgtcgatagttgtctattctagaaatccca 465
            ||||| ||| ||||||| |||| ||||||||| |  ||||  || | || |||||| |||
Sbjct: 1003 aggcctccggcaaacacatcctgccagtggtgccagtagtcatcgactcgagaaatgcca 944

                                                                        
Query: 466  acaagtgaagcgagaagtagaggaagaatcacgatgcaaagctttgccacgtgacctttg 525
            |||||||| || | |||||| || ||||  || ||||| || ||||| || |||||| ||
Sbjct: 943  acaagtgatgcaaaaagtagtggcagaaaaacaatgcagagttttgcaacatgacctctg 884

                                                                        
Query: 526  cgatcaaatgcctgaattttgccagataagtatagtgacaaaaacccaaatccagcaaaa 585
            ||||||||||| |  ||||| ||||||||||| ||||| ||||| || |  |||| ||| 
Sbjct: 883  cgatcaaatgcttttattttcccagataagtacagtgataaaaatcccagaccagaaaat 824

                                             
Query: 586  gaccacgacgtgtgtccactaggaaaactcttg 618
            ||||| || || || || || ||||||||||||
Sbjct: 823  gaccatgaagtatggccgcttggaaaactcttg 791
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>emb|CR931729.2| Medicago truncatula chromosome 5 clone mte1-82a1, COMPLETE SEQUENCE
          Length = 94751

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                   
Query: 499   atgcaaagctttgccacgtgacctttgcgatcaaatgc 536
             |||||||| ||||| || ||||||||||||||||||||
Sbjct: 42964 atgcaaagttttgcaacatgacctttgcgatcaaatgc 42927



 Score = 40.1 bits (20), Expect = 9.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 349   tgatatggaggaggaaagaagtgcaaatagca 380
             ||||| ||||||||||| || |||||||||||
Sbjct: 43234 tgataaggaggaggaaaaaactgcaaatagca 43203
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>ref|NM_111128.1| Arabidopsis thaliana LPP3; phosphatidate phosphatase AT3G02600
           (LPP3) mRNA, complete cds
          Length = 1538

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 91/113 (80%)
 Strand = Plus / Minus

                                                                       
Query: 499 atgcaaagctttgccacgtgacctttgcgatcaaatgcctgaattttgccagataagtat 558
           ||||| |||||||| ||||| ||||| |  |||||||| ||||| || || |||||||| 
Sbjct: 929 atgcatagctttgcaacgtggcctttaccgtcaaatgcttgaatctttcccgataagtaa 870

                                                                
Query: 559 agtgacaaaaacccaaatccagcaaaagaccacgacgtgtgtccactaggaaa 611
           || || | ||| || |  || | ||||||||| |||||||||||||| |||||
Sbjct: 869 agcgaaagaaatccgagacccgaaaaagaccatgacgtgtgtccacttggaaa 817
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>gb|AY084915.1| Arabidopsis thaliana clone 121374 mRNA, complete sequence
          Length = 1538

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 91/113 (80%)
 Strand = Plus / Minus

                                                                       
Query: 499 atgcaaagctttgccacgtgacctttgcgatcaaatgcctgaattttgccagataagtat 558
           ||||| |||||||| ||||| ||||| |  |||||||| ||||| || || |||||||| 
Sbjct: 929 atgcatagctttgcaacgtggcctttaccgtcaaatgcttgaatctttcccgataagtaa 870

                                                                
Query: 559 agtgacaaaaacccaaatccagcaaaagaccacgacgtgtgtccactaggaaa 611
           || || | ||| || |  || | ||||||||| |||||||||||||| |||||
Sbjct: 869 agcgaaagaaatccgagacccgaaaaagaccatgacgtgtgtccacttggaaa 817
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>gb|DQ317319.1| Musa acuminata putative phosphaticid acid phosphatase mRNA, partial
           cds
          Length = 541

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 580 gcaaaagaccacgacgtgtgtccactaggaaaactcttgcgccc 623
           ||||||||||| ||||  |||||||| |||||||||||| ||||
Sbjct: 327 gcaaaagaccatgacgaatgtccacttggaaaactcttgtgccc 284
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>gb|AY601242.1| Allagoptera leucocalyx clone A1 phosphoribulokinase-like protein 2
           (PRK) gene, exons 4, 5 and partial cds
          Length = 697

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 266 gttggttttgtgcattatttga 287
           ||||||||||||||||||||||
Sbjct: 289 gttggttttgtgcattatttga 268
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>ref|NM_192159.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 987

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                     
Query: 577 ccagcaaaagaccacgacgtgtgtccactaggaaaactcttg 618
           |||||||||||||| || || || ||||| ||||||||||||
Sbjct: 485 ccagcaaaagaccaagaagtatggccactcggaaaactcttg 444
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>dbj|AK101201.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033030N09, full
           insert sequence
          Length = 2058

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                     
Query: 577 ccagcaaaagaccacgacgtgtgtccactaggaaaactcttg 618
           |||||||||||||| || || || ||||| ||||||||||||
Sbjct: 840 ccagcaaaagaccaagaagtatggccactcggaaaactcttg 799
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>dbj|AP006431.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT38F20, TM0328,
             complete sequence
          Length = 119346

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                   
Query: 480   aagtagaggaagaatcacgatgcaaagctttgccacgtgacctttgcgatcaaa 533
             ||||||||||| || ||| ||||| |  ||||||||||| ||| ||||||||||
Sbjct: 20934 aagtagaggaataaacacaatgcataattttgccacgtgccctctgcgatcaaa 20987
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>gb|AC113300.7| Mus musculus chromosome 5, clone RP23-430C4, complete sequence
          Length = 176085

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 195   ttccaaatcatttcttgatct 215
             |||||||||||||||||||||
Sbjct: 29002 ttccaaatcatttcttgatct 28982
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>emb|CR954256.1| Anopheles gambiae Pen-1 region; BAC clones 30N20, 10K02, 13E09, 31J16 and
              01G10 from library NotreDame1 of Anopheles gambiae (African
              malaria mosquito) strain PEST
          Length = 447895

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 155    aaggtacgctacacggagggg 175
              |||||||||||||||||||||
Sbjct: 142259 aaggtacgctacacggagggg 142239
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>emb|AL590624.8| Human DNA sequence from clone RP11-380B22 on chromosome 1 Contains a
             novel gene, complete sequence
          Length = 157779

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 562   gacaaaaacccaaatccagca 582
             |||||||||||||||||||||
Sbjct: 78823 gacaaaaacccaaatccagca 78803
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>gb|AC173914.3| Nomascus leucogenys leucogenys clone CH271-445J13, complete sequence
          Length = 188657

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 567    aaacccaaatccagcaaaaga 587
              |||||||||||||||||||||
Sbjct: 119160 aaacccaaatccagcaaaaga 119140
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>dbj|AP003309.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBb0036G09
          Length = 124118

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 565   aaaaacccaaatccagcaaaa 585
             |||||||||||||||||||||
Sbjct: 78437 aaaaacccaaatccagcaaaa 78457
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>dbj|AP003560.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1060H01
          Length = 157987

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 565   aaaaacccaaatccagcaaaa 585
             |||||||||||||||||||||
Sbjct: 38110 aaaaacccaaatccagcaaaa 38130
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>gb|AF003528.1|AF003528 Homo sapiens X-linked anhidroitic ectodermal dysplasia protein gene
             (EDA), exon 2 and flanking repeat regions
          Length = 93963

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 567   aaacccaaatccagcaaaaga 587
             |||||||||||||||||||||
Sbjct: 56128 aaacccaaatccagcaaaaga 56108
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>ref|XM_519780.1| PREDICTED: Pan troglodytes chromodomain helicase DNA binding protein
            7 (LOC464198), mRNA
          Length = 7390

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 566  aaaacccaaatccagcaaaa 585
            ||||||||||||||||||||
Sbjct: 1050 aaaacccaaatccagcaaaa 1069
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>gb|DP000016.1| Pan troglodytes target 1 genomic scaffold
          Length = 1623484

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 567     aaacccaaatccagcaaaag 586
               ||||||||||||||||||||
Sbjct: 1206783 aaacccaaatccagcaaaag 1206764
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>gb|AY307175.1| Ichthyomyzon unicuspis preprogonadotropin-releasing hormone III
           mRNA, complete cds
          Length = 723

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 294 cgcctcaagctcctccagca 313
           ||||||||||||||||||||
Sbjct: 266 cgcctcaagctcctccagca 247
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>gb|AC145405.3| Gorilla gorilla gorilla clone CH255-421A19, complete sequence
          Length = 179099

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 567  aaacccaaatccagcaaaag 586
            ||||||||||||||||||||
Sbjct: 3012 aaacccaaatccagcaaaag 2993
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>ref|XM_584090.2| PREDICTED: Bos taurus similar to centrosomal protein 2 (LOC507479),
            mRNA
          Length = 7634

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 294  cgcctcaagctcctccagca 313
            ||||||||||||||||||||
Sbjct: 3396 cgcctcaagctcctccagca 3377
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>ref|NM_017780.2| Homo sapiens chromodomain helicase DNA binding protein 7 (CHD7), mRNA
          Length = 10469

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 566  aaaacccaaatccagcaaaa 585
            ||||||||||||||||||||
Sbjct: 2547 aaaacccaaatccagcaaaa 2566
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>gb|AC087730.2| Pan troglodytes clone RP43-89H17, complete sequence
          Length = 148293

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 567   aaacccaaatccagcaaaag 586
             ||||||||||||||||||||
Sbjct: 28427 aaacccaaatccagcaaaag 28408
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 188      ttccagattccaaatcattt 207
                ||||||||||||||||||||
Sbjct: 34938490 ttccagattccaaatcattt 34938471
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>gb|AC002465.1| Homo sapiens BAC clone CTA-343P13 from 7, complete sequence
          Length = 155881

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 567   aaacccaaatccagcaaaag 586
             ||||||||||||||||||||
Sbjct: 65978 aaacccaaatccagcaaaag 65959
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>ref|XM_544097.2| PREDICTED: Canis familiaris KIAA1416, transcript variant 1
            (LOC486968), mRNA
          Length = 10221

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 566  aaaacccaaatccagcaaaa 585
            ||||||||||||||||||||
Sbjct: 2236 aaaacccaaatccagcaaaa 2255
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>gb|AY524778.1| Homo sapiens phospholipase A2, group V (PLA2G5) gene, complete cds
          Length = 24340

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 312   catgtggaagtatgcatagg 331
             ||||||||||||||||||||
Sbjct: 18311 catgtggaagtatgcatagg 18330
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>ref|XM_973617.1| PREDICTED: Mus musculus chromodomain helicase DNA binding protein 7,
            transcript variant 2 (Chd7), mRNA
          Length = 9237

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 566  aaaacccaaatccagcaaaa 585
            ||||||||||||||||||||
Sbjct: 2316 aaaacccaaatccagcaaaa 2335
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>ref|XM_973577.1| PREDICTED: Mus musculus chromodomain helicase DNA binding protein 7,
            transcript variant 1 (Chd7), mRNA
          Length = 9289

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 566  aaaacccaaatccagcaaaa 585
            ||||||||||||||||||||
Sbjct: 2368 aaaacccaaatccagcaaaa 2387
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>ref|XM_905428.2| PREDICTED: Mus musculus chromodomain helicase DNA binding protein 7,
            transcript variant 2 (Chd7), mRNA
          Length = 9298

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 566  aaaacccaaatccagcaaaa 585
            ||||||||||||||||||||
Sbjct: 2221 aaaacccaaatccagcaaaa 2240
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>ref|XM_985866.1| PREDICTED: Mus musculus chromodomain helicase DNA binding protein 7,
            transcript variant 1 (Chd7), mRNA
          Length = 9444

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 566  aaaacccaaatccagcaaaa 585
            ||||||||||||||||||||
Sbjct: 2368 aaaacccaaatccagcaaaa 2387
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>emb|CT009484.8| M.truncatula DNA sequence from clone MTH2-69D3 on chromosome 3,
             complete sequence
          Length = 109089

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 477   gagaagtagaggaagaatca 496
             ||||||||||||||||||||
Sbjct: 88280 gagaagtagaggaagaatca 88299



 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 477   gagaagtagaggaagaatca 496
             ||||||||||||||||||||
Sbjct: 77377 gagaagtagaggaagaatca 77396



 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 477   gagaagtagaggaagaatca 496
             ||||||||||||||||||||
Sbjct: 66467 gagaagtagaggaagaatca 66486
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>gb|AC122450.4| Mus musculus BAC clone RP24-249K4 from chromosome 1, complete sequence
          Length = 154695

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 566   aaaacccaaatccagcaaaa 585
             ||||||||||||||||||||
Sbjct: 22773 aaaacccaaatccagcaaaa 22792
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>ref|XM_726335.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY03424)
           partial mRNA
          Length = 5571

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 194 attccaaatcatttcttgat 213
           ||||||||||||||||||||
Sbjct: 190 attccaaatcatttcttgat 171
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>gb|AC135415.27| Medicago truncatula clone mth2-10b9, complete sequence
          Length = 130045

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 477   gagaagtagaggaagaatca 496
             ||||||||||||||||||||
Sbjct: 91846 gagaagtagaggaagaatca 91827



 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 477   gagaagtagaggaagaatca 496
             ||||||||||||||||||||
Sbjct: 80945 gagaagtagaggaagaatca 80926
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>emb|AL158172.5| Human DNA sequence from clone RP1-169O23 on chromosome 1 Contains the
             3' end of the PLA2G5 gene for phospholipase A2 group V,
             the PLA2G2D gene for phospholipase A2 group IID and the 5'
             end of the PLA2G2F gene for phospholipase A2 group IIF,
             complete sequence
          Length = 98743

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 312   catgtggaagtatgcatagg 331
             ||||||||||||||||||||
Sbjct: 40259 catgtggaagtatgcatagg 40278
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>emb|AL136991.26| Human DNA sequence from clone RP11-189J1 on chromosome 20 Contains the
             3' end of the gene for a novel protein (LOC284776),
             complete sequence
          Length = 169342

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 260   caggctgttggttttgtgca 279
             ||||||||||||||||||||
Sbjct: 55158 caggctgttggttttgtgca 55177
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>dbj|AK123158.1| Homo sapiens cDNA FLJ41163 fis, clone BRACE2039734
          Length = 1730

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 566  aaaacccaaatccagcaaaa 585
            ||||||||||||||||||||
Sbjct: 1353 aaaacccaaatccagcaaaa 1372
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>gb|AC113143.3| Homo sapiens chromosome 8, clone RP11-33I11, complete sequence
          Length = 157672

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 566   aaaacccaaatccagcaaaa 585
             ||||||||||||||||||||
Sbjct: 26937 aaaacccaaatccagcaaaa 26956
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>gb|AF386920.1| Bovine rotavirus strain B8 outer capsid protein VP7 gene, complete
           cds
          Length = 1062

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 83  acatatctagttctaaactc 102
           ||||||||||||||||||||
Sbjct: 505 acatatctagttctaaactc 486
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>gb|AC019215.4|AC019215 Homo sapiens BAC clone RP11-480M18 from 8, complete sequence
          Length = 192579

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 347    ggtgatatggaggaggaaag 366
              ||||||||||||||||||||
Sbjct: 124084 ggtgatatggaggaggaaag 124065
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>gb|AC091388.1|AC091388 Drosophila melanogaster, chromosome 2R, region 44C-44D, BAC clone
              BACR14B02, complete sequence
          Length = 194036

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 495    cacgatgcaaagctttgcca 514
              ||||||||||||||||||||
Sbjct: 172058 cacgatgcaaagctttgcca 172039
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 188      ttccagattccaaatcattt 207
                ||||||||||||||||||||
Sbjct: 35028562 ttccagattccaaatcattt 35028543
to top
>gb|DP000025.1| Gorilla gorilla gorilla target 1 genomic scaffold
          Length = 1787293

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 567     aaacccaaatccagcaaaag 586
               ||||||||||||||||||||
Sbjct: 1119626 aaacccaaatccagcaaaag 1119607
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>gb|AC104487.3| Oryza sativa chromosome 3 BAC OSJNBa0042I09 genomic sequence, complete
             sequence
          Length = 171376

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 188   ttccagattccaaatcattt 207
             ||||||||||||||||||||
Sbjct: 76990 ttccagattccaaatcattt 77009
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>ref|XM_232671.3| PREDICTED: Rattus norvegicus chromodomain helicase DNA binding
            protein 7 (predicted) (Chd7_predicted), mRNA
          Length = 11456

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 566  aaaacccaaatccagcaaaa 585
            ||||||||||||||||||||
Sbjct: 3423 aaaacccaaatccagcaaaa 3442
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>emb|BX648966.1|HSM809117 Homo sapiens mRNA; cDNA DKFZp686C2294 (from clone DKFZp686C2294)
          Length = 6607

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 312  catgtggaagtatgcatagg 331
            ||||||||||||||||||||
Sbjct: 3542 catgtggaagtatgcatagg 3561
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>gb|AY108542.1| Zea mays PCO117551 mRNA sequence
          Length = 475

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 56/68 (82%)
 Strand = Plus / Minus

                                                                       
Query: 466 acaagtgaagcgagaagtagaggaagaatcacgatgcaaagctttgccacgtgacctttg 525
           |||||||| |||| ||||||||| ||||  || | ||| || ||||| | |||||| |||
Sbjct: 336 acaagtgacgcgacaagtagaggcagaaaaactaagcacagttttgcaatgtgacccttg 277

                   
Query: 526 cgatcaaa 533
           ||||||||
Sbjct: 276 cgatcaaa 269
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>gb|AE003837.3| Drosophila melanogaster chromosome 2R, section 13 of 73 of the complete
              sequence
          Length = 265215

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 495    cacgatgcaaagctttgcca 514
              ||||||||||||||||||||
Sbjct: 137615 cacgatgcaaagctttgcca 137596
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>gb|AC006421.1|AC006421 Drosophila melanogaster, chromosome 2R, region 44C1-44C5, P1 clones
             DS08614 and DS00667, complete sequence
          Length = 100575

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 495   cacgatgcaaagctttgcca 514
             ||||||||||||||||||||
Sbjct: 82275 cacgatgcaaagctttgcca 82256
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>dbj|D14033.1|ROHVP7P Human rotavirus gene for VP7 protein, complete cds
          Length = 1062

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 83  acatatctagttctaaactc 102
           ||||||||||||||||||||
Sbjct: 505 acatatctagttctaaactc 486
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>gb|AC171013.3| Gallus gallus BAC clone CH261-71N5 from chromosome ul, complete
             sequence
          Length = 196838

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 564   caaaaacccaaatccagcaa 583
             ||||||||||||||||||||
Sbjct: 98665 caaaaacccaaatccagcaa 98684
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>emb|AL805903.12| Mouse DNA sequence from clone RP23-464N23 on chromosome 4, complete
             sequence
          Length = 136895

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 566   aaaacccaaatccagcaaaa 585
             ||||||||||||||||||||
Sbjct: 24045 aaaacccaaatccagcaaaa 24064
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>emb|AL844891.7| Mouse DNA sequence from clone RP23-350N21 on chromosome 2, complete
             sequence
          Length = 138602

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 561   tgacaaaaacccaaatccagcaaa 584
             |||||||| |||||||||||||||
Sbjct: 70452 tgacaaaatcccaaatccagcaaa 70429
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>emb|AL606908.10| Mouse DNA sequence from clone RP23-273D6 on chromosome 4, complete
             sequence
          Length = 212360

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 349   tgatatggaggaggaaagaa 368
             ||||||||||||||||||||
Sbjct: 34182 tgatatggaggaggaaagaa 34163


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,595,827
Number of Sequences: 3902068
Number of extensions: 5595827
Number of successful extensions: 100291
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100042
Number of HSP's gapped (non-prelim): 248
length of query: 692
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 669
effective length of database: 17,143,297,704
effective search space: 11468866163976
effective search space used: 11468866163976
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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