ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd19h06 |
|---|---|
| Clone Library Name | barley_pub |
>RBS_HORVU (Q40004) Ribulose bisphosphate carboxylase small chain, chloroplast| precursor (EC 4.1.1.39) (RuBisCO small subunit) Length = 174 Score = 43.1 bits (100), Expect = 2e-04 Identities = 21/21 (100%), Positives = 21/21 (100%) Frame = -1 Query: 316 MAPTVMASSATSVAPFQGLKS 254 MAPTVMASSATSVAPFQGLKS Sbjct: 1 MAPTVMASSATSVAPFQGLKS 21
>RBS_AEGTA (Q38793) Ribulose bisphosphate carboxylase small chain, chloroplast| precursor (EC 4.1.1.39) (RuBisCO small subunit) Length = 175 Score = 43.1 bits (100), Expect = 2e-04 Identities = 21/21 (100%), Positives = 21/21 (100%) Frame = -1 Query: 316 MAPTVMASSATSVAPFQGLKS 254 MAPTVMASSATSVAPFQGLKS Sbjct: 1 MAPTVMASSATSVAPFQGLKS 21
>RBS2_ORYSA (P18566) Ribulose bisphosphate carboxylase small chain A,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit A) Length = 175 Score = 43.1 bits (100), Expect = 2e-04 Identities = 21/21 (100%), Positives = 21/21 (100%) Frame = -1 Query: 316 MAPTVMASSATSVAPFQGLKS 254 MAPTVMASSATSVAPFQGLKS Sbjct: 1 MAPTVMASSATSVAPFQGLKS 21
>RBS3_ORYSA (P18567) Ribulose bisphosphate carboxylase small chain C,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit C) Length = 175 Score = 40.4 bits (93), Expect = 0.001 Identities = 19/21 (90%), Positives = 21/21 (100%) Frame = -1 Query: 316 MAPTVMASSATSVAPFQGLKS 254 MAP+VMASSAT+VAPFQGLKS Sbjct: 1 MAPSVMASSATTVAPFQGLKS 21
>RBS1_WHEAT (P00871) Ribulose bisphosphate carboxylase small chain PWS4.3,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit PWS4.3) Length = 174 Score = 40.0 bits (92), Expect = 0.001 Identities = 19/21 (90%), Positives = 20/21 (95%) Frame = -1 Query: 316 MAPTVMASSATSVAPFQGLKS 254 MAP VMASSAT+VAPFQGLKS Sbjct: 1 MAPAVMASSATTVAPFQGLKS 21
>RBS2_WHEAT (P26667) Ribulose bisphosphate carboxylase small chain PW9,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit PW9) Length = 175 Score = 40.0 bits (92), Expect = 0.001 Identities = 19/21 (90%), Positives = 20/21 (95%) Frame = -1 Query: 316 MAPTVMASSATSVAPFQGLKS 254 MAP VMASSAT+VAPFQGLKS Sbjct: 1 MAPAVMASSATTVAPFQGLKS 21
>RBS_MAIZE (P05348) Ribulose bisphosphate carboxylase small chain, chloroplast| precursor (EC 4.1.1.39) (RuBisCO small subunit) Length = 170 Score = 37.4 bits (85), Expect = 0.009 Identities = 20/22 (90%), Positives = 21/22 (95%), Gaps = 1/22 (4%) Frame = -1 Query: 316 MAPTVM-ASSATSVAPFQGLKS 254 MAPTVM ASSAT+VAPFQGLKS Sbjct: 1 MAPTVMMASSATAVAPFQGLKS 22
>RBS_SACHY (Q41373) Ribulose bisphosphate carboxylase small chain, chloroplast| precursor (EC 4.1.1.39) (RuBisCO small subunit) Length = 168 Score = 36.6 bits (83), Expect = 0.016 Identities = 18/21 (85%), Positives = 19/21 (90%) Frame = -1 Query: 316 MAPTVMASSATSVAPFQGLKS 254 MA TVMASSAT+ APFQGLKS Sbjct: 1 MALTVMASSATAAAPFQGLKS 21
>RBS1_ORYSA (P05347) Ribulose bisphosphate carboxylase small chain, chloroplast| precursor (EC 4.1.1.39) (RuBisCO small subunit) Length = 172 Score = 35.4 bits (80), Expect = 0.035 Identities = 16/18 (88%), Positives = 18/18 (100%) Frame = -1 Query: 316 MAPTVMASSATSVAPFQG 263 MAP+VMASSAT+VAPFQG Sbjct: 1 MAPSVMASSATTVAPFQG 18
>UL63_HCMVA (P16820) Hypothetical protein UL63| Length = 129 Score = 31.2 bits (69), Expect = 0.65 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 8/63 (12%) Frame = -1 Query: 184 HCFGFSF-SIYLSYLFLRICVCPCSC-------TNMARENMLVCECCRXLCICTYA*YYT 29 H FG S+Y++Y++ +C C C + R N + + C LC T++ T Sbjct: 48 HLFGKKLISLYVTYIYYTLCTPNCRCCIRRKNSPYLYRLNFCLIDTCLELCPPTFSLCIT 107 Query: 28 IIC 20 IC Sbjct: 108 KIC 110
>HNF1B_XENLA (Q91910) Hepatocyte nuclear factor 1-beta (HNF-1B) (LFB3) (XLFB3)| Length = 561 Score = 29.6 bits (65), Expect = 1.9 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = +3 Query: 39 YAYVHIHSXRQHSHTSMFSRAMLVHEHGHTHILRN 143 + Y H H Q+SHTS F AM+V + L N Sbjct: 515 HMYAHKHEPPQYSHTSRFPSAMVVTDTSSISTLSN 549
>AMGO2_PONPY (Q5R7M3) Amphoterin-induced protein 2 precursor (AMIGO-2)| Length = 522 Score = 29.3 bits (64), Expect = 2.5 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = -1 Query: 163 SIYLSYLFLRICVCPCSCTNMARENML 83 SI L L+L + CPC C ++NML Sbjct: 409 SIVLVLLYLYLTPCPCKCKTKRQKNML 435
>AMGO2_HUMAN (Q86SJ2) Amphoterin-induced protein 2 precursor (AMIGO-2)| (Alivin-1) (Differentially expressed in gastric adenocarcinomas) (DEGA) Length = 522 Score = 29.3 bits (64), Expect = 2.5 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = -1 Query: 163 SIYLSYLFLRICVCPCSCTNMARENML 83 SI L L+L + CPC C ++NML Sbjct: 409 SIVLVLLYLYLTPCPCKCKTKRQKNML 435
>RBS2_FRIAG (O22572) Ribulose bisphosphate carboxylase small chain 2,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2) Length = 179 Score = 28.9 bits (63), Expect = 3.2 Identities = 16/32 (50%), Positives = 18/32 (56%) Frame = -1 Query: 340 AIYLHSTAMAPTVMASSATSVAPFQGLKSGKA 245 A L S A A V + A+ VAPF GLKS A Sbjct: 5 ATMLSSVATAACVAPAQASMVAPFVGLKSASA 36
>ENGC_PROMA (Q7VEJ4) Probable GTPase engC (EC 3.6.1.-)| Length = 309 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = +2 Query: 122 TYTYS*EQIRKINGEGKPKAMSELTKLQWHFICGPSSV 235 T+ Y I +NGEG K + L ++ +CGPS V Sbjct: 156 TWGYQPIPISIVNGEGIQKLSARLKSMKLGVLCGPSGV 193
>KE4_MOUSE (Q31125) Zinc transporter SLC39A7 (Solute carrier family 39 member| 7) (Histidine-rich membrane protein Ke4) Length = 476 Score = 28.5 bits (62), Expect = 4.2 Identities = 11/31 (35%), Positives = 15/31 (48%) Frame = +3 Query: 39 YAYVHIHSXRQHSHTSMFSRAMLVHEHGHTH 131 +++ H H H H+ S H HGHTH Sbjct: 45 HSHGHSHEDFHHGHSHGHSHEDFHHGHGHTH 75
>SEPT3_MOUSE (Q9Z1S5) Neuronal-specific septin-3| Length = 465 Score = 28.5 bits (62), Expect = 4.2 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 10/53 (18%) Frame = -1 Query: 157 YLSYLFLRICVCPCSCTNM-----ARENMLVCEC-----CRXLCICTYA*YYT 29 YL + +CVC C C M E+ V C C +C+C Y Y+ Sbjct: 364 YLCSILSSVCVCVCVCVCMYVCMCVMESACVYVCVMESACVCVCMCVYVCVYS 416
>BUD3_ASHGO (Q9HF61) Bud site selection protein BUD3| Length = 1478 Score = 28.1 bits (61), Expect = 5.5 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = +3 Query: 51 HIHSXRQHSHTSMFSRAMLVHEHGHTHILRNK*ER*MEKENPKQ 182 H +++ S+ S H++G HILRN E E+P+Q Sbjct: 818 HKKDKKENKRNSVGSDTRNRHDNGSVHILRNSSSSFRELESPRQ 861
>US27_HCMVA (P09703) G-protein coupled receptor homolog US27 (HHRF2)| Length = 362 Score = 28.1 bits (61), Expect = 5.5 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Frame = +1 Query: 28 LYNIMRTCIYIAXDSIHIQACFLEPCWYMNMDIHIFLGTN-KKDKW 162 L N++ C+Y+ +++AC +N I+I +GT +KD W Sbjct: 268 LQNVIIFCLYVGQFLAYVRAC-------LNPGIYILVGTQMRKDMW 306
>KE4_CANFA (Q5TJF6) Zinc transporter SLC39A7 (Solute carrier family 39 member| 7) (Histidine-rich membrane protein Ke4) Length = 469 Score = 28.1 bits (61), Expect = 5.5 Identities = 12/31 (38%), Positives = 17/31 (54%) Frame = +3 Query: 39 YAYVHIHSXRQHSHTSMFSRAMLVHEHGHTH 131 ++Y H H H+H S++ HEHGH H Sbjct: 58 HSYAHGHG---HTHESIWHGHTHGHEHGHAH 85
>RBS2_PETHY (P04715) Ribulose bisphosphate carboxylase small chain SSU11A,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit SSU11A) Length = 180 Score = 27.7 bits (60), Expect = 7.2 Identities = 13/26 (50%), Positives = 18/26 (69%) Frame = -1 Query: 331 LHSTAMAPTVMASSATSVAPFQGLKS 254 + S A+A + A+ A+ VAPF GLKS Sbjct: 6 MSSAAVATSTNAAQASMVAPFTGLKS 31
>YHFA_SCHPO (O74751) Hypothetical protein C1734.10c in chromosome II| Length = 332 Score = 27.3 bits (59), Expect = 9.4 Identities = 9/17 (52%), Positives = 13/17 (76%) Frame = -2 Query: 225 GPHIKCHCSFVNSDIAL 175 GP+ K HCSF N+++ L Sbjct: 164 GPNFKLHCSFCNAELGL 180
>GPR37_RAT (Q9QYC6) Probable G-protein coupled receptor 37 precursor| (G-protein coupled receptor CNS1) Length = 603 Score = 27.3 bits (59), Expect = 9.4 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 4/35 (11%) Frame = -1 Query: 145 LFLRICVCP----CSCTNMARENMLVCECCRXLCI 53 LF + CV P C C +R M C CC CI Sbjct: 528 LFFKSCVTPVLLFCLCRPFSRAFMECCCCCCEECI 562
>GPR37_MOUSE (Q9QY42) Probable G-protein coupled receptor 37 precursor| Length = 600 Score = 27.3 bits (59), Expect = 9.4 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 4/35 (11%) Frame = -1 Query: 145 LFLRICVCP----CSCTNMARENMLVCECCRXLCI 53 LF + CV P C C +R M C CC CI Sbjct: 525 LFFKSCVTPVLLFCLCRPFSRAFMECCCCCCEECI 559
>RBS5_FRIAG (O22645) Ribulose bisphosphate carboxylase small chain 5,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 5) Length = 179 Score = 27.3 bits (59), Expect = 9.4 Identities = 15/32 (46%), Positives = 17/32 (53%) Frame = -1 Query: 340 AIYLHSTAMAPTVMASSATSVAPFQGLKSGKA 245 A L S A A + A+ VAPF GLKS A Sbjct: 5 ATMLSSVATAACAAPAQASMVAPFVGLKSASA 36
>RBS3_FRIAG (O22573) Ribulose bisphosphate carboxylase small chain 3,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 3) Length = 179 Score = 27.3 bits (59), Expect = 9.4 Identities = 15/32 (46%), Positives = 17/32 (53%) Frame = -1 Query: 340 AIYLHSTAMAPTVMASSATSVAPFQGLKSGKA 245 A L S A A + A+ VAPF GLKS A Sbjct: 5 ATMLSSVATAARAAPAQASMVAPFVGLKSASA 36
>SYS_RHOBA (Q7UXX6) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)| (SerRS) Length = 426 Score = 27.3 bits (59), Expect = 9.4 Identities = 14/38 (36%), Positives = 22/38 (57%) Frame = -1 Query: 289 ATSVAPFQGLKSGKA*TAH*RWATYKVPLQFCQL*HCF 176 AT+ P G+ SG+ A+ ++PL++C L HCF Sbjct: 228 ATAEIPLGGMLSGQI------LASEELPLRYCGLSHCF 259
>AMGO2_RAT (Q7TNJ4) Amphoterin-induced protein 2 precursor (AMIGO-2)| (Alivin-1) Length = 520 Score = 27.3 bits (59), Expect = 9.4 Identities = 11/27 (40%), Positives = 16/27 (59%) Frame = -1 Query: 163 SIYLSYLFLRICVCPCSCTNMARENML 83 SI L L+L + CPC C + ++N L Sbjct: 409 SIVLVLLYLYLTPCPCKCRDKRQKNAL 435
>GPR37_HUMAN (O15354) Probable G-protein coupled receptor 37 precursor| (Endothelin B receptor-like protein 1) (ETBR-LP-1) (Parkin-associated endothelin receptor-like receptor) (PAELR) Length = 613 Score = 27.3 bits (59), Expect = 9.4 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 4/35 (11%) Frame = -1 Query: 145 LFLRICVCP----CSCTNMARENMLVCECCRXLCI 53 LF + CV P C C +R M C CC CI Sbjct: 538 LFFKSCVTPVLLFCLCKPFSRAFMECCCCCCEECI 572 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,424,621 Number of Sequences: 219361 Number of extensions: 954607 Number of successful extensions: 2371 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 2277 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2361 length of database: 80,573,946 effective HSP length: 94 effective length of database: 59,954,012 effective search space used: 1438896288 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
