ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd19h01 |
|---|---|
| Clone Library Name | barley_pub |
>PINH_ARATH (Q9XGW1) PINHEAD protein (ZWILLE protein)| Length = 988 Score = 89.0 bits (219), Expect = 1e-17 Identities = 44/112 (39%), Positives = 64/112 (57%), Gaps = 2/112 (1%) Frame = -1 Query: 607 YMCAHAGMIGTTRPTHYHILHDEIHFAADDLQDLVHSLSYVYQRSTTAISVVSPICYAHL 428 Y+C+HAG+ GT+RP HYH+L DE +F AD +Q L ++L Y Y R T ++S+V P YAHL Sbjct: 877 YLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSIVPPAYYAHL 936 Query: 427 AAAQVAQFIKFDEMXXXXX--XXXXXXXXXXXGPVQELPRLHEKVRSSMFFC 278 AA + +++ + M V+ LP L E V+ MF+C Sbjct: 937 AAFRARFYLEPEIMQDNGSPGKKNTKTTTVGDVGVKPLPALKENVKRVMFYC 988
>AGOL_ARATH (Q9SJK3) Argonaute-like protein At2g27880| Length = 997 Score = 87.4 bits (215), Expect = 3e-17 Identities = 43/110 (39%), Positives = 62/110 (56%) Frame = -1 Query: 607 YMCAHAGMIGTTRPTHYHILHDEIHFAADDLQDLVHSLSYVYQRSTTAISVVSPICYAHL 428 Y+ +HAG+ GT+RP HYH+L DE F AD LQ L ++L Y Y R T ++S+V P YAHL Sbjct: 889 YLNSHAGIQGTSRPAHYHVLLDENGFTADQLQMLTNNLCYTYARCTKSVSIVPPAYYAHL 948 Query: 427 AAAQVAQFIKFDEMXXXXXXXXXXXXXXXXGPVQELPRLHEKVRSSMFFC 278 AA + A++ EM + +LP + + V+ MF+C Sbjct: 949 AAFR-ARYYMESEMSDGGSSRSRSSTTGVGQVISQLPAIKDNVKEVMFYC 997
>AGO1_ARATH (O04379) Argonaute protein| Length = 1048 Score = 85.5 bits (210), Expect = 1e-16 Identities = 47/122 (38%), Positives = 63/122 (51%), Gaps = 12/122 (9%) Frame = -1 Query: 607 YMCAHAGMIGTTRPTHYHILHDEIHFAADDLQDLVHSLSYVYQRSTTAISVVSPICYAHL 428 Y+C+HAG+ GT+RP HYH+L DE +F AD LQ L ++L Y Y R T ++S+V P YAHL Sbjct: 928 YLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHL 987 Query: 427 AAAQVAQFIKFDEMXXXXXXXXXXXXX------------XXXGPVQELPRLHEKVRSSMF 284 AA + A+F E V+ LP L E V+ MF Sbjct: 988 AAFR-ARFYMEPETSDSGSMASGSMARGGGMAGRSTRGPNVNAAVRPLPALKENVKRVMF 1046 Query: 283 FC 278 +C Sbjct: 1047 YC 1048
>I2C2_RABIT (O77503) Eukaryotic translation initiation factor 2C 2 (eIF2C 2)| (eIF-2C 2) (Argonaute-2) (Fragment) Length = 840 Score = 73.9 bits (180), Expect = 3e-13 Identities = 30/62 (48%), Positives = 46/62 (74%) Frame = -1 Query: 607 YMCAHAGMIGTTRPTHYHILHDEIHFAADDLQDLVHSLSYVYQRSTTAISVVSPICYAHL 428 Y+C+HAG+ GT+RP+HYH+L D+ F++D+LQ L + L + Y R T ++S+ +P YAHL Sbjct: 730 YLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHL 789 Query: 427 AA 422 A Sbjct: 790 VA 791
>I2C3_MOUSE (Q8CJF9) Eukaryotic translation initiation factor 2C 3 (eIF2C 3)| (eIF-2C 3) (Argonaute-3) (Piwi/argonaute family protein meIF2C3) Length = 860 Score = 73.9 bits (180), Expect = 3e-13 Identities = 31/62 (50%), Positives = 45/62 (72%) Frame = -1 Query: 607 YMCAHAGMIGTTRPTHYHILHDEIHFAADDLQDLVHSLSYVYQRSTTAISVVSPICYAHL 428 Y+C+HAG+ GT+RP+HYH+L D+ F AD+LQ L + L + Y R T ++S+ +P YAHL Sbjct: 750 YLCSHAGIQGTSRPSHYHVLWDDNFFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHL 809 Query: 427 AA 422 A Sbjct: 810 VA 811
>I2C2_RAT (Q9QZ81) Eukaryotic translation initiation factor 2C 2 (eIF2C 2)| (eIF-2C 2) (Argonaute-2) (Golgi ER protein 95 kDa) (GERp95) Length = 860 Score = 73.9 bits (180), Expect = 3e-13 Identities = 30/62 (48%), Positives = 46/62 (74%) Frame = -1 Query: 607 YMCAHAGMIGTTRPTHYHILHDEIHFAADDLQDLVHSLSYVYQRSTTAISVVSPICYAHL 428 Y+C+HAG+ GT+RP+HYH+L D+ F++D+LQ L + L + Y R T ++S+ +P YAHL Sbjct: 750 YLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHL 809 Query: 427 AA 422 A Sbjct: 810 VA 811
>I2C2_MOUSE (Q8CJG0) Eukaryotic translation initiation factor 2C 2 (eIF2C 2)| (eIF-2C 2) (Argonaute-2) (Slicer protein) (Piwi/argonaute family protein meIF2C2) Length = 860 Score = 73.9 bits (180), Expect = 3e-13 Identities = 30/62 (48%), Positives = 46/62 (74%) Frame = -1 Query: 607 YMCAHAGMIGTTRPTHYHILHDEIHFAADDLQDLVHSLSYVYQRSTTAISVVSPICYAHL 428 Y+C+HAG+ GT+RP+HYH+L D+ F++D+LQ L + L + Y R T ++S+ +P YAHL Sbjct: 750 YLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHL 809 Query: 427 AA 422 A Sbjct: 810 VA 811
>I2C2_BOVIN (Q6QME8) Eukaryotic translation initiation factor 2C 2 (eIF2C 2)| (eIF-2C 2) (Argonaute-2) Length = 860 Score = 73.9 bits (180), Expect = 3e-13 Identities = 30/62 (48%), Positives = 46/62 (74%) Frame = -1 Query: 607 YMCAHAGMIGTTRPTHYHILHDEIHFAADDLQDLVHSLSYVYQRSTTAISVVSPICYAHL 428 Y+C+HAG+ GT+RP+HYH+L D+ F++D+LQ L + L + Y R T ++S+ +P YAHL Sbjct: 750 YLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHL 809 Query: 427 AA 422 A Sbjct: 810 VA 811
>I2C2_HUMAN (Q9UKV8) Eukaryotic translation initiation factor 2C 2 (eIF2C 2)| (eIF-2C 2) (Argonaute-2) (Slicer protein) (PAZ Piwi domain protein) (PPD) Length = 851 Score = 73.9 bits (180), Expect = 3e-13 Identities = 30/62 (48%), Positives = 46/62 (74%) Frame = -1 Query: 607 YMCAHAGMIGTTRPTHYHILHDEIHFAADDLQDLVHSLSYVYQRSTTAISVVSPICYAHL 428 Y+C+HAG+ GT+RP+HYH+L D+ F++D+LQ L + L + Y R T ++S+ +P YAHL Sbjct: 741 YLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHL 800 Query: 427 AA 422 A Sbjct: 801 VA 802
>I2C3_HUMAN (Q9H9G7) Eukaryotic translation initiation factor 2C 3 (eIF2C 3)| (eIF-2C 3) (Argonaute-3) Length = 860 Score = 73.2 bits (178), Expect = 6e-13 Identities = 31/62 (50%), Positives = 45/62 (72%) Frame = -1 Query: 607 YMCAHAGMIGTTRPTHYHILHDEIHFAADDLQDLVHSLSYVYQRSTTAISVVSPICYAHL 428 Y+C+HAG+ GT+RP+HYH+L D+ F AD+LQ L + L + Y R T ++S+ +P YAHL Sbjct: 750 YLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHL 809 Query: 427 AA 422 A Sbjct: 810 VA 811
>I2C1_MOUSE (Q8CJG1) Eukaryotic translation initiation factor 2C 1 (eIF2C 1)| (eIF-2C 1) (Argonaute-1) (Piwi/argonaute family protein meIF2C1) Length = 857 Score = 69.3 bits (168), Expect = 8e-12 Identities = 29/62 (46%), Positives = 44/62 (70%) Frame = -1 Query: 607 YMCAHAGMIGTTRPTHYHILHDEIHFAADDLQDLVHSLSYVYQRSTTAISVVSPICYAHL 428 Y+C+HAG+ GT+RP+HY++L D+ F AD+LQ L + L + Y R T ++S+ +P YA L Sbjct: 747 YLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARL 806 Query: 427 AA 422 A Sbjct: 807 VA 808
>I2C1_HUMAN (Q9UL18) Eukaryotic translation initiation factor 2C 1 (eIF2C 1)| (eIF-2C 1) (Argonaute-1) (Putative RNA-binding protein Q99) Length = 857 Score = 69.3 bits (168), Expect = 8e-12 Identities = 29/62 (46%), Positives = 44/62 (70%) Frame = -1 Query: 607 YMCAHAGMIGTTRPTHYHILHDEIHFAADDLQDLVHSLSYVYQRSTTAISVVSPICYAHL 428 Y+C+HAG+ GT+RP+HY++L D+ F AD+LQ L + L + Y R T ++S+ +P YA L Sbjct: 747 YLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARL 806 Query: 427 AA 422 A Sbjct: 807 VA 808
>YO43_CAEEL (P34681) Hypothetical protein ZK757.3| Length = 1040 Score = 68.6 bits (166), Expect = 1e-11 Identities = 27/70 (38%), Positives = 45/70 (64%) Frame = -1 Query: 607 YMCAHAGMIGTTRPTHYHILHDEIHFAADDLQDLVHSLSYVYQRSTTAISVVSPICYAHL 428 Y+C+H G+ GT+RP YH+L DE F AD++Q + + + + Y R T ++S+ +P+ YA L Sbjct: 897 YLCSHYGVQGTSRPARYHVLLDECKFTADEIQSITYGMCHTYGRCTRSVSIPTPVYYADL 956 Query: 427 AAAQVAQFIK 398 A + +K Sbjct: 957 VATRARCHVK 966
>I2C4_MOUSE (Q8CJF8) Eukaryotic translation initiation factor 2C 4 (eIF2C 4)| (eIF-2C 4) (Argonaute-4) (Piwi/argonaute family protein meIF2C4) Length = 861 Score = 67.0 bits (162), Expect = 4e-11 Identities = 29/62 (46%), Positives = 43/62 (69%) Frame = -1 Query: 607 YMCAHAGMIGTTRPTHYHILHDEIHFAADDLQDLVHSLSYVYQRSTTAISVVSPICYAHL 428 Y+C+HAG+ GT+RP+HY +L D+ F AD+LQ L + L + Y R T ++S+ +P YA L Sbjct: 751 YLCSHAGIQGTSRPSHYQVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARL 810 Query: 427 AA 422 A Sbjct: 811 VA 812
>I2C4_HUMAN (Q9HCK5) Eukaryotic translation initiation factor 2C 4 (eIF2C 4)| (eIF-2C 4) (Argonaute-4) Length = 861 Score = 67.0 bits (162), Expect = 4e-11 Identities = 29/62 (46%), Positives = 43/62 (69%) Frame = -1 Query: 607 YMCAHAGMIGTTRPTHYHILHDEIHFAADDLQDLVHSLSYVYQRSTTAISVVSPICYAHL 428 Y+C+HAG+ GT+RP+HY +L D+ F AD+LQ L + L + Y R T ++S+ +P YA L Sbjct: 751 YLCSHAGIQGTSRPSHYQVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARL 810 Query: 427 AA 422 A Sbjct: 811 VA 812
>AGO1_SCHPO (O74957) Cell cycle control protein ago1 (RNA interference pathway| protein ago1) Length = 834 Score = 67.0 bits (162), Expect = 4e-11 Identities = 28/62 (45%), Positives = 41/62 (66%) Frame = -1 Query: 607 YMCAHAGMIGTTRPTHYHILHDEIHFAADDLQDLVHSLSYVYQRSTTAISVVSPICYAHL 428 Y+ +H + G + P HY +LHDEI D Q L ++L YVY R+T+A+S+V P+ YAHL Sbjct: 730 YLISHPSLQGVSVPVHYTVLHDEIQMPPDQFQTLCYNLCYVYARATSAVSLVPPVYYAHL 789 Query: 427 AA 422 + Sbjct: 790 VS 791
>PIWL4_MOUSE (Q8CGT6) Piwi-like protein 4 (mAgo5)| Length = 815 Score = 46.2 bits (108), Expect = 7e-05 Identities = 23/69 (33%), Positives = 35/69 (50%) Frame = -1 Query: 607 YMCAHAGMIGTTRPTHYHILHDEIHFAADDLQDLVHSLSYVYQRSTTAISVVSPICYAHL 428 Y+ + GT PTHY++++D+ D +Q L L ++Y ISV +P YAH Sbjct: 732 YLISQTANRGTVSPTHYNVIYDDNALKPDHMQRLTFKLCHLYYNWQGLISVPAPCQYAHK 791 Query: 427 AAAQVAQFI 401 VAQ + Sbjct: 792 LTFLVAQSV 800
>PIWL1_MOUSE (Q9JMB7) Piwi-like protein 1| Length = 862 Score = 44.7 bits (104), Expect = 2e-04 Identities = 23/69 (33%), Positives = 35/69 (50%) Frame = -1 Query: 607 YMCAHAGMIGTTRPTHYHILHDEIHFAADDLQDLVHSLSYVYQRSTTAISVVSPICYAHL 428 ++ + A G+ PTHY++++D D +Q L + L +VY I V +P YAH Sbjct: 779 FIVSQAVRSGSVSPTHYNVIYDSSGLKPDHIQRLTYKLCHVYYNWPGVIRVPAPCQYAHK 838 Query: 427 AAAQVAQFI 401 A V Q I Sbjct: 839 LAFLVGQSI 847
>PIWL4_HUMAN (Q7Z3Z4) Piwi-like protein 4| Length = 852 Score = 44.3 bits (103), Expect = 3e-04 Identities = 22/69 (31%), Positives = 35/69 (50%) Frame = -1 Query: 607 YMCAHAGMIGTTRPTHYHILHDEIHFAADDLQDLVHSLSYVYQRSTTAISVVSPICYAHL 428 Y+ + GT PT+Y++++D+ D +Q L L ++Y +SV +P YAH Sbjct: 769 YLISQVACRGTVSPTYYNVIYDDNGLKPDHMQRLTFKLCHLYYNWPGIVSVPAPCQYAHK 828 Query: 427 AAAQVAQFI 401 VAQ I Sbjct: 829 LTFLVAQSI 837
>PIWL1_HUMAN (Q96J94) Piwi-like protein 1| Length = 861 Score = 44.3 bits (103), Expect = 3e-04 Identities = 22/69 (31%), Positives = 35/69 (50%) Frame = -1 Query: 607 YMCAHAGMIGTTRPTHYHILHDEIHFAADDLQDLVHSLSYVYQRSTTAISVVSPICYAHL 428 ++ + A G+ PTHY++++D D +Q L + L ++Y I V +P YAH Sbjct: 778 FIVSQAVRSGSVSPTHYNVIYDNSGLKPDHIQRLTYKLCHIYYNWPGVIRVPAPCQYAHK 837 Query: 427 AAAQVAQFI 401 A V Q I Sbjct: 838 LAFLVGQSI 846
>HAX1_MOUSE (O35387) HS1-associating protein X-1 (HAX-1) (HS1-binding protein)| Length = 280 Score = 31.2 bits (69), Expect = 2.4 Identities = 18/36 (50%), Positives = 18/36 (50%) Frame = -1 Query: 208 GSSGPFDDLLDTWDVVFLSLLPHFGASEPLDYDSMV 101 GS GPF L DTW V PH A E D DS V Sbjct: 162 GSQGPFHRLDDTWPV-----SPHSRAKEDKDLDSQV 192
>VANT_ENTGA (Q9X3P3) Serine/alanine racemase (EC 5.1.1.-) (EC 5.1.1.1)| (Vancomycin C-type resistance protein vanT) Length = 698 Score = 30.4 bits (67), Expect = 4.2 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 3/49 (6%) Frame = -1 Query: 208 GSSGPFDDLLDTWDVVFLSL---LPHFGASEPLDYDSMVLLNRQICTFE 71 G + D +L +D+ FL++ H G+++ L+ DSM+ +QI F+ Sbjct: 467 GVTPTIDSILSIFDLPFLTISGVYSHLGSADRLNPDSMIRTQKQIACFD 515
>ZN484_HUMAN (Q5JVG2) Zinc finger protein 484| Length = 852 Score = 30.0 bits (66), Expect = 5.4 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = +1 Query: 487 HKRANAQDPAGHPRQSVSHHAGYGNVLALLSQSFQHERTC 606 HK+A Q H R+S+ + Y NV + S +F HE C Sbjct: 234 HKQALIQQQKIHTRESLYLFSDYVNVFSPKSHAFAHESIC 273 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,836,584 Number of Sequences: 219361 Number of extensions: 1869813 Number of successful extensions: 5160 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 4903 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5149 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5367617986 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
