Clone Name | rbasd19h01 |
---|---|
Clone Library Name | barley_pub |
>gb|BT008960.1| Triticum aestivum clone wdk1c.pk012.i2:fis, full insert mRNA sequence Length = 2815 Score = 561 bits (283), Expect = e-157 Identities = 357/382 (93%), Gaps = 6/382 (1%) Strand = Plus / Minus Query: 232 aagcgcatcaccaaaagttggaacgcgcaagtgcgactagc------gctcagcagaaga 285 ||||||||||||||||||||||||||||||||||| || || ||||||||||||| Sbjct: 2620 aagcgcatcaccaaaagttggaacgcgcaagtgcggctggctggctggctcagcagaaga 2561 Query: 286 acatgctgctgcggactttctcatggagacgaggcagctcctgcaccgggccgctggcag 345 |||||||||||||||||||||||||||| ||||||||||||||||| || ||||| | | Sbjct: 2560 acatgctgctgcggactttctcatggaggcgaggcagctcctgcactggagcgctgccgg 2501 Query: 346 tagaggtgtggccaccaccctggctcgacgacgtctcggacatctcatcaaactttatga 405 ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct: 2500 cagaggtgtggccaccgccctggctcgacgacgtctcagacatctcatcaaactttatga 2441 Query: 406 actgcgccacctgagcagctgcaagatgtgcatagcagattggagaaacaactgatattg 465 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | Sbjct: 2440 actgcgccacctgagcagccgcaagatgtgcatagcagattggagaaacaactgatatgg 2381 Query: 466 ctgttgtgctcctttggtacacataagagagcgaatgcacaagatcctgcaggtcatccg 525 |||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct: 2380 ctgtcgtgctcctttggtacacatatgagagcgagtgcacaagatcctgcaggtcatccg 2321 Query: 526 cggcaaagtgtatctcatcatgcaggatatggtaatgtgttggccttgttgtcccaatca 585 | |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct: 2320 cagcaaagtgtatctcatcatgcaggatatggtagtgtgttggccttgtagtcccaatca 2261 Query: 586 ttccagcatgagcgcacatgta 607 |||||||||||||||||||||| Sbjct: 2260 ttccagcatgagcgcacatgta 2239 Score = 83.8 bits (42), Expect = 6e-13 Identities = 79/89 (88%), Gaps = 3/89 (3%) Strand = Plus / Minus Query: 119 caaaggttctgaggcaccaaagtgtggcagcaagcttaggaacacaacatcccaggtgtc 178 |||||||||||||||||||| ||| ||| | |||||||||||||||||||||||| ||| Sbjct: 2728 caaaggttctgaggcaccaa-gtgcagcaaccagcttaggaacacaacatcccaggagtc 2670 Query: 179 caacaggtcatcaaaggggccactactac 207 ||||||| ||||| | |||||||||||| Sbjct: 2669 caacaggccatcaca--ggccactactac 2643
>gb|AY109357.1| Zea mays CL881_1 mRNA sequence Length = 3158 Score = 224 bits (113), Expect = 3e-55 Identities = 203/233 (87%) Strand = Plus / Minus Query: 375 gacgtctcggacatctcatcaaactttatgaactgcgccacctgagcagctgcaagatgt 434 |||||||| ||||||||||| |||||||||||||| | |||||||||||||| |||||| Sbjct: 2743 gacgtctccgacatctcatcgaactttatgaactggccaacctgagcagctgccagatgt 2684 Query: 435 gcatagcagattggagaaacaactgatattgctgttgtgctcctttggtacacataagag 494 || |||||||| |||| ||| |||||||| |||||||||||||||||||||||||||||| Sbjct: 2683 gcgtagcagatgggagcaacgactgatatggctgttgtgctcctttggtacacataagag 2624 Query: 495 agcgaatgcacaagatcctgcaggtcatccgcggcaaagtgtatctcatcatgcaggata 554 ||||||||||| || |||||||| ||||| | ||| |||||||||||||||||| Sbjct: 2623 agcgaatgcaccagctcctgcagatcatcaggactgaagcctatctcatcatgcaggatg 2564 Query: 555 tggtaatgtgttggccttgttgtcccaatcattccagcatgagcgcacatgta 607 ||||| || |||||||| || ||||| |||||||||||||| || |||||||| Sbjct: 2563 tggtagtgagttggcctcgtagtcccgatcattccagcatgcgcacacatgta 2511
>gb|AY111526.1| Zea mays CL881_3 mRNA sequence Length = 628 Score = 186 bits (94), Expect = 6e-44 Identities = 187/218 (85%) Strand = Plus / Minus Query: 378 gtctcggacatctcatcaaactttatgaactgcgccacctgagcagctgcaagatgtgca 437 ||||| |||||||| || ||||||||||||||| | ||||| || |||||||| || || Sbjct: 239 gtctccgacatctcgtcgaactttatgaactgcccaacctgggcggctgcaaggtgggcg 180 Query: 438 tagcagattggagaaacaactgatattgctgttgtgctcctttggtacacataagagagc 497 |||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 179 tagcagatgggagcaacaactgatatggctgttgtgctcctttggtacacataagagagc 120 Query: 498 gaatgcacaagatcctgcaggtcatccgcggcaaagtgtatctcatcatgcaggatatgg 557 || ||||| || |||||||||||||| | ||| |||||| ||||||||||| || Sbjct: 119 gagtgcaccagctcctgcaggtcatcaggattgaagcctatctcgtcatgcaggatgtga 60 Query: 558 taatgtgttggccttgttgtcccaatcattccagcatg 595 || || |||||||| || |||||||||||||||||||| Sbjct: 59 tagtgagttggcctggtagtcccaatcattccagcatg 22 Score = 58.0 bits (29), Expect = 4e-05 Identities = 59/69 (85%) Strand = Plus / Minus Query: 273 gctcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcacc 332 |||||||||||||||||| ||| | ||||||||||| ||||| ||||||||||| || Sbjct: 341 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 282 Query: 333 gggccgctg 341 ||| ||||| Sbjct: 281 gggacgctg 273
>dbj|AK122078.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033119H08, full insert sequence Length = 3385 Score = 159 bits (80), Expect = 1e-35 Identities = 167/196 (85%) Strand = Plus / Minus Query: 412 ccacctgagcagctgcaagatgtgcatagcagattggagaaacaactgatattgctgttg 471 ||||||||||||| |||||||| |||||||| || |||| |||||||||||| ||||||| Sbjct: 2903 ccacctgagcagcagcaagatgggcatagcaaatcggagcaacaactgatatggctgttg 2844 Query: 472 tgctcctttggtacacataagagagcgaatgcacaagatcctgcaggtcatccgcggcaa 531 |||| || || |||||||||||||| || ||||| || |||||||| ||||| | || | Sbjct: 2843 tgcttctctgatacacataagagagtgagtgcactagctcctgcagatcatcaggggaga 2784 Query: 532 agtgtatctcatcatgcaggatatggtaatgtgttggccttgttgtcccaatcattccag 591 | ||||||||| ||||| | ||| |||||||||||||| || || ||||||||||||| Sbjct: 2783 aacctatctcatcgtgcagaacatgataatgtgttggcctcgtcgttccaatcattccag 2724 Query: 592 catgagcgcacatgta 607 ||||||| |||||||| Sbjct: 2723 catgagcacacatgta 2708 Score = 48.1 bits (24), Expect = 0.034 Identities = 51/60 (85%) Strand = Plus / Minus Query: 275 tcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcaccgg 334 ||||||||| |||||| ||| | |||||||||||||| ||||||||||| ||||||| Sbjct: 3037 tcagcagaaaaacatggagctcctcactttctcatggaggcgaggcagctcaggcaccgg 2978
>dbj|AK119248.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-C06, full insert sequence Length = 1885 Score = 159 bits (80), Expect = 1e-35 Identities = 167/196 (85%) Strand = Plus / Minus Query: 412 ccacctgagcagctgcaagatgtgcatagcagattggagaaacaactgatattgctgttg 471 ||||||||||||| |||||||| |||||||| || |||| |||||||||||| ||||||| Sbjct: 1451 ccacctgagcagcagcaagatgggcatagcaaatcggagcaacaactgatatggctgttg 1392 Query: 472 tgctcctttggtacacataagagagcgaatgcacaagatcctgcaggtcatccgcggcaa 531 |||| || || |||||||||||||| || ||||| || |||||||| ||||| | || | Sbjct: 1391 tgcttctctgatacacataagagagtgagtgcactagctcctgcagatcatcaggggaga 1332 Query: 532 agtgtatctcatcatgcaggatatggtaatgtgttggccttgttgtcccaatcattccag 591 | ||||||||| ||||| | ||| |||||||||||||| || || ||||||||||||| Sbjct: 1331 aacctatctcatcgtgcagaacatgataatgtgttggcctcgtcgttccaatcattccag 1272 Query: 592 catgagcgcacatgta 607 ||||||| |||||||| Sbjct: 1271 catgagcacacatgta 1256 Score = 48.1 bits (24), Expect = 0.034 Identities = 51/60 (85%) Strand = Plus / Minus Query: 275 tcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcaccgg 334 ||||||||| |||||| ||| | |||||||||||||| ||||||||||| ||||||| Sbjct: 1585 tcagcagaaaaacatggagctcctcactttctcatggaggcgaggcagctcaggcaccgg 1526
>dbj|AK104539.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-H02, full insert sequence Length = 1196 Score = 159 bits (80), Expect = 1e-35 Identities = 167/196 (85%) Strand = Plus / Minus Query: 412 ccacctgagcagctgcaagatgtgcatagcagattggagaaacaactgatattgctgttg 471 ||||||||||||| |||||||| |||||||| || |||| |||||||||||| ||||||| Sbjct: 762 ccacctgagcagcagcaagatgggcatagcaaatcggagcaacaactgatatggctgttg 703 Query: 472 tgctcctttggtacacataagagagcgaatgcacaagatcctgcaggtcatccgcggcaa 531 |||| || || |||||||||||||| || ||||| || |||||||| ||||| | || | Sbjct: 702 tgcttctctgatacacataagagagtgagtgcactagctcctgcagatcatcaggggaga 643 Query: 532 agtgtatctcatcatgcaggatatggtaatgtgttggccttgttgtcccaatcattccag 591 | ||||||||| ||||| | ||| |||||||||||||| || || ||||||||||||| Sbjct: 642 aacctatctcatcgtgcagaacatgataatgtgttggcctcgtcgttccaatcattccag 583 Query: 592 catgagcgcacatgta 607 ||||||| |||||||| Sbjct: 582 catgagcacacatgta 567 Score = 48.1 bits (24), Expect = 0.034 Identities = 51/60 (85%) Strand = Plus / Minus Query: 275 tcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcaccgg 334 ||||||||| |||||| ||| | |||||||||||||| ||||||||||| ||||||| Sbjct: 896 tcagcagaaaaacatggagctcctcactttctcatggaggcgaggcagctcaggcaccgg 837
>dbj|AK065274.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002L10, full insert sequence Length = 3178 Score = 159 bits (80), Expect = 1e-35 Identities = 167/196 (85%) Strand = Plus / Minus Query: 412 ccacctgagcagctgcaagatgtgcatagcagattggagaaacaactgatattgctgttg 471 ||||||||||||| |||||||| |||||||| || |||| |||||||||||| ||||||| Sbjct: 2721 ccacctgagcagcagcaagatgggcatagcaaatcggagcaacaactgatatggctgttg 2662 Query: 472 tgctcctttggtacacataagagagcgaatgcacaagatcctgcaggtcatccgcggcaa 531 |||| || || |||||||||||||| || ||||| || |||||||| ||||| | || | Sbjct: 2661 tgcttctctgatacacataagagagtgagtgcactagctcctgcagatcatcaggggaga 2602 Query: 532 agtgtatctcatcatgcaggatatggtaatgtgttggccttgttgtcccaatcattccag 591 | ||||||||| ||||| | ||| |||||||||||||| || || ||||||||||||| Sbjct: 2601 aacctatctcatcgtgcagaacatgataatgtgttggcctcgtcgttccaatcattccag 2542 Query: 592 catgagcgcacatgta 607 ||||||| |||||||| Sbjct: 2541 catgagcacacatgta 2526 Score = 48.1 bits (24), Expect = 0.034 Identities = 51/60 (85%) Strand = Plus / Minus Query: 275 tcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcaccgg 334 ||||||||| |||||| ||| | |||||||||||||| ||||||||||| ||||||| Sbjct: 2855 tcagcagaaaaacatggagctcctcactttctcatggaggcgaggcagctcaggcaccgg 2796
>dbj|AK060907.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-F07, full insert sequence Length = 1196 Score = 159 bits (80), Expect = 1e-35 Identities = 167/196 (85%) Strand = Plus / Minus Query: 412 ccacctgagcagctgcaagatgtgcatagcagattggagaaacaactgatattgctgttg 471 ||||||||||||| |||||||| |||||||| || |||| |||||||||||| ||||||| Sbjct: 762 ccacctgagcagcagcaagatgggcatagcaaatcggagcaacaactgatatggctgttg 703 Query: 472 tgctcctttggtacacataagagagcgaatgcacaagatcctgcaggtcatccgcggcaa 531 |||| || || |||||||||||||| || ||||| || |||||||| ||||| | || | Sbjct: 702 tgcttctctgatacacataagagagtgagtgcactagctcctgcagatcatcaggggaga 643 Query: 532 agtgtatctcatcatgcaggatatggtaatgtgttggccttgttgtcccaatcattccag 591 | ||||||||| ||||| | ||| |||||||||||||| || || ||||||||||||| Sbjct: 642 aacctatctcatcgtgcagaacatgataatgtgttggcctcgtcgttccaatcattccag 583 Query: 592 catgagcgcacatgta 607 ||||||| |||||||| Sbjct: 582 catgagcacacatgta 567 Score = 48.1 bits (24), Expect = 0.034 Identities = 51/60 (85%) Strand = Plus / Minus Query: 275 tcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcaccgg 334 ||||||||| |||||| ||| | |||||||||||||| ||||||||||| ||||||| Sbjct: 896 tcagcagaaaaacatggagctcctcactttctcatggaggcgaggcagctcaggcaccgg 837
>dbj|AK121307.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111L20, full insert sequence Length = 3027 Score = 137 bits (69), Expect = 5e-29 Identities = 269/335 (80%), Gaps = 3/335 (0%) Strand = Plus / Minus Query: 273 gctcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcacc 332 |||||||||||||||||| ||| | |||||| | ||| || ||||||||||| ||||| Sbjct: 2865 gctcagcagaagaacatggagctcctgactttgttatgcaggcgaggcagctcgggcacc 2806 Query: 333 gggccgctggcagtagaggtgtggccaccaccctggctcgacgacgtctcggacatctca 392 || ||||| | | ||||| ||||||||| ||||||||||||||||| |||||||| Sbjct: 2805 ggagcgctgcccgccgaggtatggccacca---tggctcgacgacgtctccgacatctcg 2749 Query: 393 tcaaactttatgaactgcgccacctgagcagctgcaagatgtgcatagcagattggagaa 452 || ||||| |||||||| ||||||||||| || ||||| || ||||| || || | | Sbjct: 2748 tcgaacttgatgaactggctgacctgagcagcagcgagatgcgcgtagcaaatgggtgca 2689 Query: 453 acaactgatattgctgttgtgctcctttggtacacataagagagcgaatgcacaagatcc 512 || |||||||| ||||| |||||||| ||||| ||||| || || || || || | ||| Sbjct: 2688 acgactgatatggctgtagtgctcctctggtagacataggaaagggagtggaccaactcc 2629 Query: 513 tgcaggtcatccgcggcaaagtgtatctcatcatgcaggatatggtaatgtgttggcctt 572 || || || || || | ||| |||||||||||| |||||||| |||||||| |||||| Sbjct: 2628 tgaagatcgtcagcagagaagcctatctcatcatgaaggatatgataatgtgtaggcctt 2569 Query: 573 gttgtcccaatcattccagcatgagcgcacatgta 607 || || |||||||||||||| || || |||||||| Sbjct: 2568 gtagttccaatcattccagcgtgcgcacacatgta 2534
>dbj|AK064813.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000E08, full insert sequence Length = 3047 Score = 137 bits (69), Expect = 5e-29 Identities = 269/335 (80%), Gaps = 3/335 (0%) Strand = Plus / Minus Query: 273 gctcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcacc 332 |||||||||||||||||| ||| | |||||| | ||| || ||||||||||| ||||| Sbjct: 2875 gctcagcagaagaacatggagctcctgactttgttatgcaggcgaggcagctcgggcacc 2816 Query: 333 gggccgctggcagtagaggtgtggccaccaccctggctcgacgacgtctcggacatctca 392 || ||||| | | ||||| ||||||||| ||||||||||||||||| |||||||| Sbjct: 2815 ggagcgctgcccgccgaggtatggccacca---tggctcgacgacgtctccgacatctcg 2759 Query: 393 tcaaactttatgaactgcgccacctgagcagctgcaagatgtgcatagcagattggagaa 452 || ||||| |||||||| ||||||||||| || ||||| || ||||| || || | | Sbjct: 2758 tcgaacttgatgaactggctgacctgagcagcagcgagatgcgcgtagcaaatgggtgca 2699 Query: 453 acaactgatattgctgttgtgctcctttggtacacataagagagcgaatgcacaagatcc 512 || |||||||| ||||| |||||||| ||||| ||||| || || || || || | ||| Sbjct: 2698 acgactgatatggctgtagtgctcctctggtagacataggaaagggagtggaccaactcc 2639 Query: 513 tgcaggtcatccgcggcaaagtgtatctcatcatgcaggatatggtaatgtgttggcctt 572 || || || || || | ||| |||||||||||| |||||||| |||||||| |||||| Sbjct: 2638 tgaagatcgtcagcagagaagcctatctcatcatgaaggatatgataatgtgtaggcctt 2579 Query: 573 gttgtcccaatcattccagcatgagcgcacatgta 607 || || |||||||||||||| || || |||||||| Sbjct: 2578 gtagttccaatcattccagcgtgcgcacacatgta 2544
>dbj|AK061675.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-H03, full insert sequence Length = 772 Score = 137 bits (69), Expect = 5e-29 Identities = 269/335 (80%), Gaps = 3/335 (0%) Strand = Plus / Minus Query: 273 gctcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcacc 332 |||||||||||||||||| ||| | |||||| | ||| || ||||||||||| ||||| Sbjct: 574 gctcagcagaagaacatggagctcctgactttgttatgcaggcgaggcagctcgggcacc 515 Query: 333 gggccgctggcagtagaggtgtggccaccaccctggctcgacgacgtctcggacatctca 392 || ||||| | | ||||| ||||||||| ||||||||||||||||| |||||||| Sbjct: 514 ggagcgctgcccgccgaggtatggccacca---tggctcgacgacgtctccgacatctcg 458 Query: 393 tcaaactttatgaactgcgccacctgagcagctgcaagatgtgcatagcagattggagaa 452 || ||||| |||||||| ||||||||||| || ||||| || ||||| || || | | Sbjct: 457 tcgaacttgatgaactggctgacctgagcagcagcgagatgcgcgtagcaaatgggtgca 398 Query: 453 acaactgatattgctgttgtgctcctttggtacacataagagagcgaatgcacaagatcc 512 || |||||||| ||||| |||||||| ||||| ||||| || || || || || | ||| Sbjct: 397 acgactgatatggctgtagtgctcctctggtagacataggaaagggagtggaccaactcc 338 Query: 513 tgcaggtcatccgcggcaaagtgtatctcatcatgcaggatatggtaatgtgttggcctt 572 || || || || || | ||| |||||||||||| |||||||| |||||||| |||||| Sbjct: 337 tgaagatcgtcagcagagaagcctatctcatcatgaaggatatgataatgtgtaggcctt 278 Query: 573 gttgtcccaatcattccagcatgagcgcacatgta 607 || || |||||||||||||| || || |||||||| Sbjct: 277 gtagttccaatcattccagcgtgcgcacacatgta 243
>ref|NM_188086.1| Oryza sativa (japonica cultivar-group), Ozsa8518 predicted mRNA Length = 2715 Score = 133 bits (67), Expect = 7e-28 Identities = 267/333 (80%), Gaps = 3/333 (0%) Strand = Plus / Minus Query: 275 tcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcaccgg 334 |||||||||||||||| ||| | |||||| | ||| || ||||||||||| ||||||| Sbjct: 2715 tcagcagaagaacatggagctcctgactttgttatgcaggcgaggcagctcgggcaccgg 2656 Query: 335 gccgctggcagtagaggtgtggccaccaccctggctcgacgacgtctcggacatctcatc 394 ||||| | | ||||| ||||||||| ||||||||||||||||| |||||||| || Sbjct: 2655 agcgctgcccgccgaggtatggccacca---tggctcgacgacgtctccgacatctcgtc 2599 Query: 395 aaactttatgaactgcgccacctgagcagctgcaagatgtgcatagcagattggagaaac 454 ||||| |||||||| ||||||||||| || ||||| || ||||| || || | ||| Sbjct: 2598 gaacttgatgaactggctgacctgagcagcagcgagatgcgcgtagcaaatgggtgcaac 2539 Query: 455 aactgatattgctgttgtgctcctttggtacacataagagagcgaatgcacaagatcctg 514 |||||||| ||||| |||||||| ||||| ||||| || || || || || | ||||| Sbjct: 2538 gactgatatggctgtagtgctcctctggtagacataggaaagggagtggaccaactcctg 2479 Query: 515 caggtcatccgcggcaaagtgtatctcatcatgcaggatatggtaatgtgttggccttgt 574 || || || || | ||| |||||||||||| |||||||| |||||||| |||||||| Sbjct: 2478 aagatcgtcagcagagaagcctatctcatcatgaaggatatgataatgtgtaggccttgt 2419 Query: 575 tgtcccaatcattccagcatgagcgcacatgta 607 || |||||||||||||| || || |||||||| Sbjct: 2418 agttccaatcattccagcgtgcgcacacatgta 2386
>gb|BT009560.1| Triticum aestivum clone wre1n.pk0001.h6:fis, full insert mRNA sequence Length = 1565 Score = 95.6 bits (48), Expect = 2e-16 Identities = 111/132 (84%) Strand = Plus / Minus Query: 275 tcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcaccgg 334 |||||||||||||||| ||| | |||||||| || || |||||||||||| ||||||| Sbjct: 1171 tcagcagaagaacatggagctcctcactttctcgtgcagccgaggcagctccggcaccgg 1112 Query: 335 gccgctggcagtagaggtgtggccaccaccctggctcgacgacgtctcggacatctcatc 394 | ||||| | | ||| |||||||| || ||||||||||||||||| || ||||| || || Sbjct: 1111 ggcgctgcccgcagacgtgtggccccctccctggctcgacgacgtgtccgacatgtcctc 1052 Query: 395 aaactttatgaa 406 |||||| ||||| Sbjct: 1051 aaacttcatgaa 1040 Score = 87.7 bits (44), Expect = 4e-14 Identities = 125/152 (82%) Strand = Plus / Minus Query: 456 actgatattgctgttgtgctcctttggtacacataagagagcgaatgcacaagatcctgc 515 |||||||| || || |||||||| ||||||||||| |||||||| ||||||| ||||| Sbjct: 990 actgatatcgccgtcgtgctcctctggtacacataggagagcgagtgcacaaactcctgg 931 Query: 516 aggtcatccgcggcaaagtgtatctcatcatgcaggatatggtaatgtgttggccttgtt 575 || |||||| | ||| |||||||||||||| | ||||||||| |||||||| | Sbjct: 930 agctcatccccactgaagccgatctcatcatgcagaacatggtaatgcgttggcctcgac 871 Query: 576 gtcccaatcattccagcatgagcgcacatgta 607 || |||||||| |||||||| ||||||||||| Sbjct: 870 gtgccaatcatcccagcatgcgcgcacatgta 839
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 79.8 bits (40), Expect = 1e-11 Identities = 138/170 (81%), Gaps = 3/170 (1%) Strand = Plus / Plus Query: 273 gctcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcacc 332 |||||||||||||||||| ||| | |||||| | ||| || ||||||||||| ||||| Sbjct: 9630504 gctcagcagaagaacatggagctcctgactttgttatgcaggcgaggcagctcgggcacc 9630563 Query: 333 gggccgctggcagtagaggtgtggccaccaccctggctcgacgacgtctcggacatctca 392 || ||||| | | ||||| ||||||||| ||||||||||||||||| |||||||| Sbjct: 9630564 ggagcgctgcccgccgaggtatggccacca---tggctcgacgacgtctccgacatctcg 9630620 Query: 393 tcaaactttatgaactgcgccacctgagcagctgcaagatgtgcatagca 442 || ||||| |||||||| ||||||||||| || ||||| || ||||| Sbjct: 9630621 tcgaacttgatgaactggctgacctgagcagcagcgagatgcgcgtagca 9630670 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 536 tatctcatcatgcaggatatggtaatgtgttggccttgt 574 |||||||||||| |||||||| |||||||| |||||||| Sbjct: 9630944 tatctcatcatgaaggatatgataatgtgtaggccttgt 9630982 Score = 46.1 bits (23), Expect = 0.13 Identities = 38/43 (88%) Strand = Plus / Plus Query: 538 tctcatcatgcaggatatggtaatgtgttggccttgttgtccc 580 ||||||||||||| | ||||||||| || |||||||| ||||| Sbjct: 9613132 tctcatcatgcagcacatggtaatgcgtcggccttgtagtccc 9613174 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 catcaccaaaagttggaacg 256 |||||||||||||||||||| Sbjct: 21143571 catcaccaaaagttggaacg 21143552 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 580 caatcattccagcatgagcgcacatgta 607 ||||||| ||||||||||| |||||||| Sbjct: 9614055 caatcatcccagcatgagcacacatgta 9614082
>dbj|AP000836.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0038F12 Length = 190014 Score = 79.8 bits (40), Expect = 1e-11 Identities = 138/170 (81%), Gaps = 3/170 (1%) Strand = Plus / Plus Query: 273 gctcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcacc 332 |||||||||||||||||| ||| | |||||| | ||| || ||||||||||| ||||| Sbjct: 68507 gctcagcagaagaacatggagctcctgactttgttatgcaggcgaggcagctcgggcacc 68566 Query: 333 gggccgctggcagtagaggtgtggccaccaccctggctcgacgacgtctcggacatctca 392 || ||||| | | ||||| ||||||||| ||||||||||||||||| |||||||| Sbjct: 68567 ggagcgctgcccgccgaggtatggccacca---tggctcgacgacgtctccgacatctcg 68623 Query: 393 tcaaactttatgaactgcgccacctgagcagctgcaagatgtgcatagca 442 || ||||| |||||||| ||||||||||| || ||||| || ||||| Sbjct: 68624 tcgaacttgatgaactggctgacctgagcagcagcgagatgcgcgtagca 68673 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 536 tatctcatcatgcaggatatggtaatgtgttggccttgt 574 |||||||||||| |||||||| |||||||| |||||||| Sbjct: 68947 tatctcatcatgaaggatatgataatgtgtaggccttgt 68985 Score = 46.1 bits (23), Expect = 0.13 Identities = 38/43 (88%) Strand = Plus / Plus Query: 538 tctcatcatgcaggatatggtaatgtgttggccttgttgtccc 580 ||||||||||||| | ||||||||| || |||||||| ||||| Sbjct: 51135 tctcatcatgcagcacatggtaatgcgtcggccttgtagtccc 51177 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 580 caatcattccagcatgagcgcacatgta 607 ||||||| ||||||||||| |||||||| Sbjct: 52058 caatcatcccagcatgagcacacatgta 52085
>ref|NM_122122.2| Arabidopsis thaliana unknown protein AT5G21150 mRNA, complete cds Length = 3018 Score = 77.8 bits (39), Expect = 4e-11 Identities = 108/131 (82%) Strand = Plus / Minus Query: 471 gtgctcctttggtacacataagagagcgaatgcacaagatcctgcaggtcatccgcggca 530 |||||||| ||||| ||||| || || ||||||||||| || || ||||| || | |||| Sbjct: 2614 gtgctcctctggtagacataggacagagaatgcacaagttcttggaggtcgtctgtggca 2555 Query: 531 aagtgtatctcatcatgcaggatatggtaatgtgttggccttgttgtcccaatcattcca 590 || ||||| |||| ||| | ||||||||||||||||||||| || |||||||| ||| Sbjct: 2554 aacccaatctcgtcatacagaacatggtaatgtgttggccttgtagttccaatcatgcca 2495 Query: 591 gcatgagcgca 601 ||||| ||||| Sbjct: 2494 gcatgggcgca 2484
>dbj|AK221864.1| Arabidopsis thaliana mRNA for zwille/pinhead-like protein, partial cds, clone: RAFL22-12-J01 Length = 1966 Score = 77.8 bits (39), Expect = 4e-11 Identities = 108/131 (82%) Strand = Plus / Minus Query: 471 gtgctcctttggtacacataagagagcgaatgcacaagatcctgcaggtcatccgcggca 530 |||||||| ||||| ||||| || || ||||||||||| || || ||||| || | |||| Sbjct: 1552 gtgctcctctggtagacataggacagagaatgcacaagttcttggaggtcgtctgtggca 1493 Query: 531 aagtgtatctcatcatgcaggatatggtaatgtgttggccttgttgtcccaatcattcca 590 || ||||| |||| ||| | ||||||||||||||||||||| || |||||||| ||| Sbjct: 1492 aacccaatctcgtcatacagaacatggtaatgtgttggccttgtagttccaatcatgcca 1433 Query: 591 gcatgagcgca 601 ||||| ||||| Sbjct: 1432 gcatgggcgca 1422
>dbj|AK118258.1| Arabidopsis thaliana At5g21150 mRNA for putative zwille/pinhead, complete cds, clone: RAFL19-56-B01 Length = 3090 Score = 77.8 bits (39), Expect = 4e-11 Identities = 108/131 (82%) Strand = Plus / Minus Query: 471 gtgctcctttggtacacataagagagcgaatgcacaagatcctgcaggtcatccgcggca 530 |||||||| ||||| ||||| || || ||||||||||| || || ||||| || | |||| Sbjct: 2679 gtgctcctctggtagacataggacagagaatgcacaagttcttggaggtcgtctgtggca 2620 Query: 531 aagtgtatctcatcatgcaggatatggtaatgtgttggccttgttgtcccaatcattcca 590 || ||||| |||| ||| | ||||||||||||||||||||| || |||||||| ||| Sbjct: 2619 aacccaatctcgtcatacagaacatggtaatgtgttggccttgtagttccaatcatgcca 2560 Query: 591 gcatgagcgca 601 ||||| ||||| Sbjct: 2559 gcatgggcgca 2549
>gb|BT013764.1| Lycopersicon esculentum clone 132647R, mRNA sequence Length = 3104 Score = 71.9 bits (36), Expect = 2e-09 Identities = 69/80 (86%) Strand = Plus / Minus Query: 417 tgagcagctgcaagatgtgcatagcagattggagaaacaactgatattgctgttgtgctc 476 |||| ||| |||||||| ||||| ||||| |||| |||||| |||||||| || ||||| Sbjct: 2703 tgagtagcagcaagatgggcataacagataggagcaacaacagatattgcagtggtgctt 2644 Query: 477 ctttggtacacataagagag 496 || ||||||||||||||||| Sbjct: 2643 ctctggtacacataagagag 2624 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Minus Query: 573 gttgtcccaatcattccagcatgagcgcaca 603 ||||| |||||||||||||||||||| |||| Sbjct: 2547 gttgtaccaatcattccagcatgagcacaca 2517
>emb|AJ544236.1|ATH544236 Arabidopsis thaliana mRNA for ARGONAUTE9 protein (At5g21150 gene) Length = 2897 Score = 69.9 bits (35), Expect = 9e-09 Identities = 107/131 (81%) Strand = Plus / Minus Query: 471 gtgctcctttggtacacataagagagcgaatgcacaagatcctgcaggtcatccgcggca 530 |||||||| ||||| |||| || || ||||||||||| || || ||||| || | |||| Sbjct: 2498 gtgctcctctggtagacatgggacagagaatgcacaagttcttggaggtcgtctgtggca 2439 Query: 531 aagtgtatctcatcatgcaggatatggtaatgtgttggccttgttgtcccaatcattcca 590 || ||||| |||| ||| | ||||||||||||||||||||| || |||||||| ||| Sbjct: 2438 aacccaatctcgtcatacagaacatggtaatgtgttggccttgtagttccaatcatgcca 2379 Query: 591 gcatgagcgca 601 ||||| ||||| Sbjct: 2378 gcatgggcgca 2368
>ref|NM_122111.2| Arabidopsis thaliana unknown protein AT5G21030 mRNA, complete cds Length = 2553 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Minus Query: 554 atggtaatgtgttggccttgttgtcccaatcattccagcatgagc 598 ||||||||||||||||||||| || |||||| ||||||||||||| Sbjct: 2277 atggtaatgtgttggccttgtagttccaatctttccagcatgagc 2233
>gb|DQ321491.1| Nicotiana benthamiana AGO4-2 mRNA, partial cds Length = 2715 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 441 cagattggagaaacaactgatattgctgttgtgctcctttggtacacataaga 493 ||||| |||| |||||| |||||||| ||||||||||||||||| |||||||| Sbjct: 2555 cagatgggagcaacaacagatattgcagttgtgctcctttggtagacataaga 2503 Score = 48.1 bits (24), Expect = 0.034 Identities = 54/64 (84%) Strand = Plus / Minus Query: 540 tcatcatgcaggatatggtaatgtgttggccttgttgtcccaatcattccagcatgagcg 599 |||||||||| || |||||| ||||| || | || || ||||||||||||||||| ||| Sbjct: 2456 tcatcatgcaagacatggtagtgtgtaggacgagtggtaccaatcattccagcatgggcg 2397 Query: 600 caca 603 |||| Sbjct: 2396 caca 2393
>gb|AY104211.1| Zea mays PCO124720 mRNA sequence Length = 2052 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 446 tggagaaacaactgatattgctgttgtgctcctttggtacacataagagagcgaatgcac 505 ||||| ||| ||||| || ||||| |||||||| |||||||| |||||||||||||| || Sbjct: 1697 tggagcaaccactgagatggctgtcgtgctcctctggtacacgtaagagagcgaatgaac 1638 Query: 506 aagatcctgca 516 || ||||||| Sbjct: 1637 aaactcctgca 1627 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 567 ggccttgttgtcccaatcattccagcatgagcgcacatgta 607 ||||||||||| |||||||| |||||||| || |||||||| Sbjct: 1576 ggccttgttgttccaatcatcccagcatgtgcacacatgta 1536 Score = 46.1 bits (23), Expect = 0.13 Identities = 47/55 (85%) Strand = Plus / Minus Query: 277 agcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcac 331 |||||||||||||| ||| | |||||| ||||| || |||||||||||| |||| Sbjct: 1866 agcagaagaacatggagctcctgactttgtcatgcaggcgaggcagctccggcac 1812
>gb|BT018108.1| Zea mays clone EL01N0553E01.c mRNA sequence Length = 1267 Score = 58.0 bits (29), Expect = 4e-05 Identities = 53/61 (86%) Strand = Plus / Minus Query: 456 actgatattgctgttgtgctcctttggtacacataagagagcgaatgcacaagatcctgc 515 ||||| || ||||| |||||||| |||||||| |||||||||||||| |||| |||||| Sbjct: 896 actgagatggctgtcgtgctcctctggtacacgtaagagagcgaatgaacaaactcctgc 837 Query: 516 a 516 | Sbjct: 836 a 836 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 567 ggccttgttgtcccaatcattccagcatgagcgcacatgta 607 ||||||||||| |||||||| |||||||| || |||||||| Sbjct: 785 ggccttgttgttccaatcatcccagcatgtgcacacatgta 745 Score = 46.1 bits (23), Expect = 0.13 Identities = 47/55 (85%) Strand = Plus / Minus Query: 277 agcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcac 331 |||||||||||||| ||| | |||||| ||||| || |||||||||||| |||| Sbjct: 1075 agcagaagaacatggagctcctgactttgtcatgcaggcgaggcagctccggcac 1021
>ref|NM_128262.2| Arabidopsis thaliana AGO4 (ARGONAUTE 4) AT2G27040 (AGO4) mRNA, complete cds Length = 3166 Score = 54.0 bits (27), Expect = 5e-04 Identities = 81/99 (81%) Strand = Plus / Minus Query: 416 ctgagcagctgcaagatgtgcatagcagattggagaaacaactgatattgctgttgtgct 475 |||||||||||| | || ||||||||||| || | |||||| || || || | ||||| Sbjct: 2767 ctgagcagctgccaagtgagcatagcagatcggcgcaacaacagaaatggcactggtgct 2708 Query: 476 cctttggtacacataagagagcgaatgcacaagatcctg 514 |||||||||||||| |||||||| || ||||| ||||| Sbjct: 2707 tctttggtacacataggagagcgagtggacaagttcctg 2669
>gb|AY051033.1| Arabidopsis thaliana putative argonaute AGO1 protein (At2g27040) mRNA, complete cds Length = 2806 Score = 54.0 bits (27), Expect = 5e-04 Identities = 81/99 (81%) Strand = Plus / Minus Query: 416 ctgagcagctgcaagatgtgcatagcagattggagaaacaactgatattgctgttgtgct 475 |||||||||||| | || ||||||||||| || | |||||| || || || | ||||| Sbjct: 2637 ctgagcagctgccaagtgagcatagcagatcggcgcaacaacagaaatggcactggtgct 2578 Query: 476 cctttggtacacataagagagcgaatgcacaagatcctg 514 |||||||||||||| |||||||| || ||||| ||||| Sbjct: 2577 tctttggtacacataggagagcgagtggacaagttcctg 2539
>gb|AY035081.1| Arabidopsis thaliana putative Argonaute (AGO1) protein (At2g27040) mRNA, complete cds Length = 3171 Score = 54.0 bits (27), Expect = 5e-04 Identities = 81/99 (81%) Strand = Plus / Minus Query: 416 ctgagcagctgcaagatgtgcatagcagattggagaaacaactgatattgctgttgtgct 475 |||||||||||| | || ||||||||||| || | |||||| || || || | ||||| Sbjct: 2767 ctgagcagctgccaagtgagcatagcagatcggcgcaacaacagaaatggcactggtgct 2708 Query: 476 cctttggtacacataagagagcgaatgcacaagatcctg 514 |||||||||||||| |||||||| || ||||| ||||| Sbjct: 2707 tctttggtacacataggagagcgagtggacaagttcctg 2669
>emb|BX820023.1|CNS0A9EM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS63ZA02 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 838 Score = 54.0 bits (27), Expect = 5e-04 Identities = 81/99 (81%) Strand = Plus / Minus Query: 416 ctgagcagctgcaagatgtgcatagcagattggagaaacaactgatattgctgttgtgct 475 |||||||||||| | || ||||||||||| || | |||||| || || || | ||||| Sbjct: 481 ctgagcagctgccaagtgagcatagcagatcggcgcaacaacagaaatggcactggtgct 422 Query: 476 cctttggtacacataagagagcgaatgcacaagatcctg 514 |||||||||||||| |||||||| || ||||| ||||| Sbjct: 421 tctttggtacacataggagagcgagtggacaagttcctg 383
>ref|XM_477327.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2670 Score = 52.0 bits (26), Expect = 0.002 Identities = 80/98 (81%) Strand = Plus / Minus Query: 402 atgaactgcgccacctgagcagctgcaagatgtgcatagcagattggagaaacaactgat 461 |||||||| ||| ||| || ||||| ||||| ||||| ||||| || | ||||| ||| Sbjct: 2546 atgaactggcccatctgcgctgctgcgagatgagcataacagataggtgccacaacagat 2487 Query: 462 attgctgttgtgctcctttggtacacataagagagcga 499 ||||| || |||||||| || ||||||||||| ||||| Sbjct: 2486 attgcagtggtgctcctctgatacacataagaaagcga 2449
>gb|AY323483.1| Oryza sativa (japonica cultivar-group) zwille pinhead-like protein (ZP1) mRNA, complete cds Length = 1407 Score = 52.0 bits (26), Expect = 0.002 Identities = 80/98 (81%) Strand = Plus / Minus Query: 402 atgaactgcgccacctgagcagctgcaagatgtgcatagcagattggagaaacaactgat 461 |||||||| ||| ||| || ||||| ||||| ||||| ||||| || | ||||| ||| Sbjct: 982 atgaactggcccatctgcgctgctgcgagatgagcataacagataggtgccacaacagat 923 Query: 462 attgctgttgtgctcctttggtacacataagagagcga 499 ||||| || |||||||| || ||||||||||| ||||| Sbjct: 922 attgcagtggtgctcctctgatacacataagaaagcga 885
>gb|AY072819.1| Oryza sativa zwille/pinhead-like protein mRNA, partial cds Length = 879 Score = 52.0 bits (26), Expect = 0.002 Identities = 80/98 (81%) Strand = Plus / Minus Query: 402 atgaactgcgccacctgagcagctgcaagatgtgcatagcagattggagaaacaactgat 461 |||||||| ||| ||| || ||||| ||||| ||||| ||||| || | ||||| ||| Sbjct: 453 atgaactggcccatctgcgctgctgcgagatgagcataacagataggtgccacaacagat 394 Query: 462 attgctgttgtgctcctttggtacacataagagagcga 499 ||||| || |||||||| || ||||||||||| ||||| Sbjct: 393 attgcagtggtgctcctctgatacacataagaaagcga 356
>dbj|AK101842.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069G22, full insert sequence Length = 1211 Score = 52.0 bits (26), Expect = 0.002 Identities = 80/98 (81%) Strand = Plus / Minus Query: 402 atgaactgcgccacctgagcagctgcaagatgtgcatagcagattggagaaacaactgat 461 |||||||| ||| ||| || ||||| ||||| ||||| ||||| || | ||||| ||| Sbjct: 808 atgaactggcccatctgcgctgctgcgagatgagcataacagataggtgccacaacagat 749 Query: 462 attgctgttgtgctcctttggtacacataagagagcga 499 ||||| || |||||||| || ||||||||||| ||||| Sbjct: 748 attgcagtggtgctcctctgatacacataagaaagcga 711
>emb|AL606693.3|OSJN00109 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0076A11, complete sequence Length = 127419 Score = 50.1 bits (25), Expect = 0.009 Identities = 73/89 (82%) Strand = Plus / Plus Query: 483 tacacataagagagcgaatgcacaagatcctgcaggtcatccgcggcaaagtgtatctca 542 |||||||||||||| || ||||| || |||||||| ||||| | || || ||||||| Sbjct: 122161 tacacataagagagtgagtgcactagctcctgcagatcatcaggggagaaacctatctca 122220 Query: 543 tcatgcaggatatggtaatgtgttggcct 571 || ||||| | ||| |||||||||||||| Sbjct: 122221 tcgtgcagaacatgataatgtgttggcct 122249 Score = 48.1 bits (24), Expect = 0.034 Identities = 27/28 (96%) Strand = Plus / Plus Query: 580 caatcattccagcatgagcgcacatgta 607 ||||||||||||||||||| |||||||| Sbjct: 122357 caatcattccagcatgagcacacatgta 122384 Score = 48.1 bits (24), Expect = 0.034 Identities = 51/60 (85%) Strand = Plus / Plus Query: 275 tcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcaccgg 334 ||||||||| |||||| ||| | |||||||||||||| ||||||||||| ||||||| Sbjct: 121776 tcagcagaaaaacatggagctcctcactttctcatggaggcgaggcagctcaggcaccgg 121835 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Plus Query: 412 ccacctgagcagctgcaagatgtgcatagca 442 ||||||||||||| |||||||| |||||||| Sbjct: 121910 ccacctgagcagcagcaagatgggcatagca 121940
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 50.1 bits (25), Expect = 0.009 Identities = 73/89 (82%) Strand = Plus / Plus Query: 483 tacacataagagagcgaatgcacaagatcctgcaggtcatccgcggcaaagtgtatctca 542 |||||||||||||| || ||||| || |||||||| ||||| | || || ||||||| Sbjct: 3532866 tacacataagagagtgagtgcactagctcctgcagatcatcaggggagaaacctatctca 3532925 Query: 543 tcatgcaggatatggtaatgtgttggcct 571 || ||||| | ||| |||||||||||||| Sbjct: 3532926 tcgtgcagaacatgataatgtgttggcct 3532954 Score = 48.1 bits (24), Expect = 0.034 Identities = 27/28 (96%) Strand = Plus / Plus Query: 580 caatcattccagcatgagcgcacatgta 607 ||||||||||||||||||| |||||||| Sbjct: 3533062 caatcattccagcatgagcacacatgta 3533089 Score = 48.1 bits (24), Expect = 0.034 Identities = 51/60 (85%) Strand = Plus / Plus Query: 275 tcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcaccgg 334 ||||||||| |||||| ||| | |||||||||||||| ||||||||||| ||||||| Sbjct: 3532481 tcagcagaaaaacatggagctcctcactttctcatggaggcgaggcagctcaggcaccgg 3532540 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Plus Query: 412 ccacctgagcagctgcaagatgtgcatagca 442 ||||||||||||| |||||||| |||||||| Sbjct: 3532615 ccacctgagcagcagcaagatgggcatagca 3532645
>gb|AC124972.41| Medicago truncatula clone mth2-24j4, complete sequence Length = 124069 Score = 48.1 bits (24), Expect = 0.034 Identities = 27/28 (96%) Strand = Plus / Plus Query: 580 caatcattccagcatgagcgcacatgta 607 ||||||||||||||||||| |||||||| Sbjct: 74110 caatcattccagcatgagcacacatgta 74137 Score = 44.1 bits (22), Expect = 0.53 Identities = 49/58 (84%) Strand = Plus / Plus Query: 393 tcaaactttatgaactgcgccacctgagcagctgcaagatgtgcatagcagattggag 450 |||||||| |||||||| |||| |||| ||| || | ||| |||||||||||||||| Sbjct: 73512 tcaaacttcatgaactgtcccacttgagaagcagccaaatgggcatagcagattggag 73569 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 580 caatcattccagcatgagcgcacat 604 ||||||||||||||||||| ||||| Sbjct: 65992 caatcattccagcatgagcacacat 66016
>gb|AC131455.5| Medicago truncatula clone mth1-42h9, complete sequence Length = 96063 Score = 48.1 bits (24), Expect = 0.034 Identities = 27/28 (96%) Strand = Plus / Minus Query: 580 caatcattccagcatgagcgcacatgta 607 ||||||||||||||||||| |||||||| Sbjct: 79766 caatcattccagcatgagcacacatgta 79739 Score = 44.1 bits (22), Expect = 0.53 Identities = 49/58 (84%) Strand = Plus / Minus Query: 393 tcaaactttatgaactgcgccacctgagcagctgcaagatgtgcatagcagattggag 450 |||||||| |||||||| |||| |||| ||| || | ||| |||||||||||||||| Sbjct: 80364 tcaaacttcatgaactgtcccacttgagaagcagccaaatgggcatagcagattggag 80307 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 580 caatcattccagcatgagcgcacat 604 ||||||||||||||||||| ||||| Sbjct: 87884 caatcattccagcatgagcacacat 87860
>gb|AC140977.1| Arabidopsis thaliana chromosome 5 BAC F13M11 genomic sequence, complete sequence Length = 112600 Score = 48.1 bits (24), Expect = 0.034 Identities = 75/92 (81%) Strand = Plus / Plus Query: 483 tacacataagagagcgaatgcacaagatcctgcaggtcatccgcggcaaagtgtatctca 542 |||||||| || || ||||||||||| || || ||||| || | |||||| ||||| Sbjct: 77221 tacacataggacagagaatgcacaagttcttggaggtcgtctgtggcaaacccaatctcg 77280 Query: 543 tcatgcaggatatggtaatgtgttggccttgt 574 |||| ||| | ||||||||||||||||||||| Sbjct: 77281 tcatacagaacatggtaatgtgttggccttgt 77312
>gb|AC069325.6|AC069325 Genomic Sequence For Arabidopsis thaliana Clone T10F18 From Chromosome V, complete sequence Length = 84413 Score = 48.1 bits (24), Expect = 0.034 Identities = 75/92 (81%) Strand = Plus / Plus Query: 483 tacacataagagagcgaatgcacaagatcctgcaggtcatccgcggcaaagtgtatctca 542 |||||||| || || ||||||||||| || || ||||| || | |||||| ||||| Sbjct: 12306 tacacataggacagagaatgcacaagttcttggaggtcgtctgtggcaaacccaatctcg 12365 Query: 543 tcatgcaggatatggtaatgtgttggccttgt 574 |||| ||| | ||||||||||||||||||||| Sbjct: 12366 tcatacagaacatggtaatgtgttggccttgt 12397 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 554 atggtaatgtgttggccttgt 574 ||||||||||||||||||||| Sbjct: 69677 atggtaatgtgttggccttgt 69657
>dbj|AP000837.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0424A08 Length = 151294 Score = 46.1 bits (23), Expect = 0.13 Identities = 38/43 (88%) Strand = Plus / Plus Query: 538 tctcatcatgcaggatatggtaatgtgttggccttgttgtccc 580 ||||||||||||| | ||||||||| || |||||||| ||||| Sbjct: 146561 tctcatcatgcagcacatggtaatgcgtcggccttgtagtccc 146603 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 580 caatcattccagcatgagcgcacatgta 607 ||||||| ||||||||||| |||||||| Sbjct: 147484 caatcatcccagcatgagcacacatgta 147511
>ref|NM_128854.2| Arabidopsis thaliana unknown protein AT2G32940 mRNA, complete cds Length = 2637 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 393 tcaaactttatgaactgcgccacctgagcagctgcaagatg 433 ||||||||| |||| ||||| || ||||| ||||||||||| Sbjct: 2558 tcaaactttgtgaattgcgcaacttgagctgctgcaagatg 2518
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 545 atgcaggatatggtaatgtgt 565 ||||||||||||||||||||| Sbjct: 1615428 atgcaggatatggtaatgtgt 1615408
>gb|BC033195.1| Homo sapiens leukocyte receptor cluster (LRC) member 12, mRNA (cDNA clone MGC:45839 IMAGE:4849085), complete cds Length = 2553 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 25 attaaaggtgcaaatttgaag 45 ||||||||||||||||||||| Sbjct: 1539 attaaaggtgcaaatttgaag 1559
>emb|AL590640.19| Human DNA sequence from clone RP11-40H20 on chromosome 1 Contains the 5' end of the SLC9A1 gene for solute carrier family 9 (sodium/hydrogen exchanger), isoform 1 (antiporter, Na+/H+, amiloride sensitive), a ribosomal protein L18a (RPL18A) pseudogene, a novel pseudogene (FLJ20420), a nucleophosmin (nucleolar phosphoprotein B23, numatrin)(NPM1) pseudogene, a mall nuclear ribonucleoprotein polypeptide E (SNRPE) pseudogene, a novel gene, the 5' end of a novel gene (KIAA1037) and a CpG island, complete sequence Length = 147052 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 444 attggagaaacaactgatatt 464 ||||||||||||||||||||| Sbjct: 113826 attggagaaacaactgatatt 113806
>emb|AL162723.12| Human DNA sequence from clone RP13-428K23 on chromosome X, complete sequence Length = 192780 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 444 attggagaaacaactgatatt 464 ||||||||||||||||||||| Sbjct: 117708 attggagaaacaactgatatt 117728
>gb|AC099739.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1528D07, complete sequence Length = 87592 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 545 atgcaggatatggtaatgtgt 565 ||||||||||||||||||||| Sbjct: 22874 atgcaggatatggtaatgtgt 22854
>ref|NM_033206.1| Homo sapiens leukocyte receptor cluster (LRC) member 12 (LENG12), mRNA Length = 2553 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 25 attaaaggtgcaaatttgaag 45 ||||||||||||||||||||| Sbjct: 1539 attaaaggtgcaaatttgaag 1559
>emb|CR759950.3| Gorilla DNA sequence from clone CH255-431H18, complete sequence Length = 177306 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 25 attaaaggtgcaaatttgaag 45 ||||||||||||||||||||| Sbjct: 19258 attaaaggtgcaaatttgaag 19278
>gb|AC003033.3| Arabidopsis thaliana chromosome 2 BAC T21L14 genomic sequence, complete sequence Length = 96801 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 393 tcaaactttatgaactgcgccacctgagcagctgcaagatg 433 ||||||||| |||| ||||| || ||||| ||||||||||| Sbjct: 51188 tcaaactttgtgaattgcgcaacttgagctgctgcaagatg 51148
>gb|AC079240.6| Homo sapiens BAC clone RP11-808H17 from 4, complete sequence Length = 202847 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 462 attgctgttgtgctcctttgg 482 ||||||||||||||||||||| Sbjct: 43796 attgctgttgtgctcctttgg 43816
>gb|AC091903.2| Homo sapiens chromosome 5 clone RP11-182I21, complete sequence Length = 194860 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 444 attggagaaacaactgatatt 464 ||||||||||||||||||||| Sbjct: 85987 attggagaaacaactgatatt 85967
>gb|AC144426.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJA1015F07, complete sequence Length = 127098 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 545 atgcaggatatggtaatgtgt 565 ||||||||||||||||||||| Sbjct: 94989 atgcaggatatggtaatgtgt 94969
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 545 atgcaggatatggtaatgtgt 565 ||||||||||||||||||||| Sbjct: 1615426 atgcaggatatggtaatgtgt 1615406
>gb|AC022882.5|AC022882 Homo sapiens chromosome 11, clone RP11-444K7, complete sequence Length = 174469 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 444 attggagaaacaactgatatt 464 ||||||||||||||||||||| Sbjct: 90207 attggagaaacaactgatatt 90227
>gb|AC068483.6| Homo sapiens BAC clone RP11-31G7 from 2, complete sequence Length = 157285 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 385 acatctcatcaaactttatga 405 ||||||||||||||||||||| Sbjct: 140262 acatctcatcaaactttatga 140282
>gb|AC009892.5|AC009892 Homo sapiens chromosome 19 clone CTB-83J4, complete sequence Length = 134008 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 25 attaaaggtgcaaatttgaag 45 ||||||||||||||||||||| Sbjct: 15938 attaaaggtgcaaatttgaag 15958
>gb|AF296834.1|F22D1 Arabidopsis thaliana BAC F22D1 Length = 96102 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 554 atggtaatgtgttggccttgt 574 ||||||||||||||||||||| Sbjct: 84037 atggtaatgtgttggccttgt 84057
>dbj|AK024467.1| Homo sapiens mRNA for FLJ00060 protein, partial cds Length = 4305 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 25 attaaaggtgcaaatttgaag 45 ||||||||||||||||||||| Sbjct: 3325 attaaaggtgcaaatttgaag 3345
>ref|XM_309632.2| Anopheles gambiae str. PEST ENSANGP00000004077 (ENSANGG00000003238), partial mRNA Length = 1875 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 579 ccaatcattccagcatgagcg 599 ||||||||||||||||||||| Sbjct: 1232 ccaatcattccagcatgagcg 1252
>dbj|AP004499.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT16N13, TM0031, complete sequence Length = 97191 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 426 gcaagatgtgcatagcagattggag 450 |||||||| |||||||||||||||| Sbjct: 60546 gcaagatgagcatagcagattggag 60522 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 580 caatcattccagcatgagcgcacat 604 |||||||||||||||| |||||||| Sbjct: 59563 caatcattccagcatgtgcgcacat 59539
>emb|AL928586.10| Mouse DNA sequence from clone RP23-353H5 on chromosome 2, complete sequence Length = 105895 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 273 gctcagcagaagaacatgctgctgc 297 |||||||||||||||||||| |||| Sbjct: 94463 gctcagcagaagaacatgctcctgc 94487
>dbj|AP000615.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, clone:P0043E01 Length = 154128 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 545 atgcaggatatggtaatgtgt 565 ||||||||||||||||||||| Sbjct: 27891 atgcaggatatggtaatgtgt 27871
>gb|AC134242.17| Medicago truncatula clone mth2-10p20, complete sequence Length = 115005 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 ctgatattgctgttgtgctc 476 |||||||||||||||||||| Sbjct: 94016 ctgatattgctgttgtgctc 94035
>emb|AL139137.15| Human DNA sequence from clone RP11-58O13 on chromosome 1, complete sequence Length = 137269 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 ttggagaaacaactgatatt 464 |||||||||||||||||||| Sbjct: 10252 ttggagaaacaactgatatt 10233
>dbj|AP003443.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1144D11 Length = 157943 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 catcaccaaaagttggaacg 256 |||||||||||||||||||| Sbjct: 111116 catcaccaaaagttggaacg 111097
>dbj|AP003924.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1064G04 Length = 186704 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 catcaccaaaagttggaacg 256 |||||||||||||||||||| Sbjct: 41080 catcaccaaaagttggaacg 41061
>gb|AC105109.10| Homo sapiens chromosome 15, clone CTD-2343P13, complete sequence Length = 76158 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 274 ctcagcagaagaacatgctgctgc 297 |||| ||||||||||||||||||| Sbjct: 35520 ctcaccagaagaacatgctgctgc 35543
>gb|AC104020.10| Homo sapiens chromosome 15, clone RP11-369K8, complete sequence Length = 171307 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 274 ctcagcagaagaacatgctgctgc 297 |||| ||||||||||||||||||| Sbjct: 162327 ctcaccagaagaacatgctgctgc 162350
>emb|BX511094.6| Zebrafish DNA sequence from clone CH211-137G12 in linkage group 19, complete sequence Length = 154360 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 gctcagcagaagaacatgct 292 |||||||||||||||||||| Sbjct: 97639 gctcagcagaagaacatgct 97620 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,714,795 Number of Sequences: 3902068 Number of extensions: 4714795 Number of successful extensions: 87663 Number of sequences better than 10.0: 68 Number of HSP's better than 10.0 without gapping: 69 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87345 Number of HSP's gapped (non-prelim): 301 length of query: 607 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 584 effective length of database: 17,143,297,704 effective search space: 10011685859136 effective search space used: 10011685859136 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)