ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd19g22 |
|---|---|
| Clone Library Name | barley_pub |
>TM9S2_MOUSE (P58021) Transmembrane 9 superfamily protein member 2 precursor| Length = 662 Score = 43.1 bits (100), Expect = 3e-04 Identities = 21/52 (40%), Positives = 29/52 (55%) Frame = -1 Query: 458 SGSVAFFVFLYSINYLVFDLRSLSGPVSATLYLGYSLIMAFAIMLSTGAIGF 303 SG A + +Y+I+Y F ++G S LY GY++IM L TG IGF Sbjct: 595 SGFTAVYFLIYAIHYF-FSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGF 645
>TM9S2_RAT (Q66HG5) Transmembrane 9 superfamily protein member 2 precursor| Length = 663 Score = 42.7 bits (99), Expect = 4e-04 Identities = 21/52 (40%), Positives = 29/52 (55%) Frame = -1 Query: 458 SGSVAFFVFLYSINYLVFDLRSLSGPVSATLYLGYSLIMAFAIMLSTGAIGF 303 SG A + +Y+I+Y F ++G S LY GY++IM L TG IGF Sbjct: 596 SGFTAVYFLVYAIHYF-FSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGF 646
>TM9S2_PONPY (Q5R8Y6) Transmembrane 9 superfamily protein member 2 precursor| Length = 663 Score = 42.7 bits (99), Expect = 4e-04 Identities = 20/52 (38%), Positives = 29/52 (55%) Frame = -1 Query: 458 SGSVAFFVFLYSINYLVFDLRSLSGPVSATLYLGYSLIMAFAIMLSTGAIGF 303 SG A + +Y+++Y F ++G S LY GY++IM L TG IGF Sbjct: 596 SGFTAVYFLIYAVHYF-FSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGF 646
>TM9S2_HUMAN (Q99805) Transmembrane 9 superfamily protein member 2 precursor| (p76) Length = 663 Score = 42.7 bits (99), Expect = 4e-04 Identities = 20/52 (38%), Positives = 29/52 (55%) Frame = -1 Query: 458 SGSVAFFVFLYSINYLVFDLRSLSGPVSATLYLGYSLIMAFAIMLSTGAIGF 303 SG A + +Y+++Y F ++G S LY GY++IM L TG IGF Sbjct: 596 SGFTAVYFLIYAVHYF-FSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGF 646
>TM9S4_HUMAN (Q92544) Transmembrane 9 superfamily protein member 4| Length = 625 Score = 39.3 bits (90), Expect = 0.005 Identities = 21/52 (40%), Positives = 30/52 (57%) Frame = -1 Query: 458 SGSVAFFVFLYSINYLVFDLRSLSGPVSATLYLGYSLIMAFAIMLSTGAIGF 303 SG AF+V +Y+I Y V L + + + LY GY+ +M + L TG IGF Sbjct: 558 SGGSAFYVLVYAIFYFVNKLDIVEF-IPSLLYFGYTALMVLSFWLLTGTIGF 608
>TM9S1_PONPY (Q5R8F1) Transmembrane 9 superfamily protein member 1 precursor| Length = 606 Score = 38.5 bits (88), Expect = 0.008 Identities = 19/51 (37%), Positives = 26/51 (50%) Frame = -1 Query: 455 GSVAFFVFLYSINYLVFDLRSLSGPVSATLYLGYSLIMAFAIMLSTGAIGF 303 GS F+FLYS+ Y ++SG V + GYSL+ + L G I F Sbjct: 540 GSTGLFIFLYSVFYYA-RRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISF 589
>TM9S1_MOUSE (Q9DBU0) Transmembrane 9 superfamily protein member 1 precursor| Length = 606 Score = 38.5 bits (88), Expect = 0.008 Identities = 19/51 (37%), Positives = 26/51 (50%) Frame = -1 Query: 455 GSVAFFVFLYSINYLVFDLRSLSGPVSATLYLGYSLIMAFAIMLSTGAIGF 303 GS F+FLYS+ Y ++SG V + GYSL+ + L G I F Sbjct: 540 GSTGLFIFLYSVFYYA-RRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISF 589
>TM9S1_HUMAN (O15321) Transmembrane 9 superfamily protein member 1 precursor| (hMP70) Length = 606 Score = 38.5 bits (88), Expect = 0.008 Identities = 19/51 (37%), Positives = 26/51 (50%) Frame = -1 Query: 455 GSVAFFVFLYSINYLVFDLRSLSGPVSATLYLGYSLIMAFAIMLSTGAIGF 303 GS F+FLYS+ Y ++SG V + GYSL+ + L G I F Sbjct: 540 GSTGLFIFLYSVFYYA-RRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISF 589
>TM9S1_RAT (Q66HF2) Transmembrane 9 superfamily protein member 1 precursor| Length = 589 Score = 38.5 bits (88), Expect = 0.008 Identities = 19/51 (37%), Positives = 26/51 (50%) Frame = -1 Query: 455 GSVAFFVFLYSINYLVFDLRSLSGPVSATLYLGYSLIMAFAIMLSTGAIGF 303 GS F+FLYS+ Y ++SG V + GYSL+ + L G I F Sbjct: 523 GSTGLFIFLYSVFYYA-RRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISF 572
>EMP70_YEAST (P32802) Endosomal P24A protein precursor (70 kDa endomembrane| protein) (Pheromone alpha-factor transporter) (Acidic 24 kDa late endocytic intermediate component) Length = 667 Score = 36.6 bits (83), Expect = 0.032 Identities = 19/48 (39%), Positives = 29/48 (60%) Frame = -1 Query: 446 AFFVFLYSINYLVFDLRSLSGPVSATLYLGYSLIMAFAIMLSTGAIGF 303 A +VF++SI + F L G + LY+GYS +++ L TG+IGF Sbjct: 606 ALYVFIHSILFTKF---KLGGFTTIVLYVGYSSVISLLCCLVTGSIGF 650
>TM9S3_MOUSE (Q9ET30) Transmembrane 9 superfamily protein member 3 precursor| Length = 587 Score = 34.7 bits (78), Expect = 0.12 Identities = 16/52 (30%), Positives = 28/52 (53%) Frame = -1 Query: 458 SGSVAFFVFLYSINYLVFDLRSLSGPVSATLYLGYSLIMAFAIMLSTGAIGF 303 + S A +V++YS Y F + + G + Y GY + + A+ + GAIG+ Sbjct: 520 AASTAIYVYMYSFYYYFFKTK-MYGLFQTSFYFGYMAVFSTALGIMCGAIGY 570
>TM9S3_HUMAN (Q9HD45) Transmembrane 9 superfamily protein member 3 precursor| (SM-11044-binding protein) (EP70-P-iso) Length = 589 Score = 34.7 bits (78), Expect = 0.12 Identities = 16/52 (30%), Positives = 28/52 (53%) Frame = -1 Query: 458 SGSVAFFVFLYSINYLVFDLRSLSGPVSATLYLGYSLIMAFAIMLSTGAIGF 303 + S A +V++YS Y F + + G + Y GY + + A+ + GAIG+ Sbjct: 522 AASTAIYVYMYSFYYYFFKTK-MYGLFQTSFYFGYMAVFSTALGIMCGAIGY 572
>NCKX1_RAT (Q9QZM6) Sodium/potassium/calcium exchanger 1| (Na(+)/K(+)/Ca(2+)-exchange protein 1) (Retinal rod Na-Ca+K exchanger) Length = 1181 Score = 33.9 bits (76), Expect = 0.21 Identities = 16/40 (40%), Positives = 26/40 (65%) Frame = +3 Query: 297 EQEADGTSRQHDGKCHDQGVAKVERRGDWPAQAPEVEHQV 416 E EA+GT + +G+ +G +VE+ G+ A+ EVEH+V Sbjct: 805 ETEAEGTEDEQEGETEAEG-KEVEQEGETEAEGKEVEHEV 843 Score = 30.4 bits (67), Expect = 2.3 Identities = 20/64 (31%), Positives = 33/64 (51%) Frame = +3 Query: 261 TDEKR*WTKY*REQEADGTSRQHDGKCHDQGVAKVERRGDWPAQAPEVEHQVVDGV*EDE 440 T+ +R T + E EA+G H+G+ +G VE +G+ A+ +VEH+ E + Sbjct: 845 TEAERKETNHEGETEAEGKEADHEGETEAEG--NVEHQGETEAEG-KVEHEGETEAGEKD 901 Query: 441 ESNG 452 E G Sbjct: 902 EHEG 905
>CBIW_BACME (O87688) Putative 2Fe-2S ferredoxin| Length = 127 Score = 32.3 bits (72), Expect = 0.61 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%) Frame = +3 Query: 303 EADGTSRQHDGKCHDQGVAKVERRGDWPAQAPE-VEHQVVD 422 EA T+R +G+C D VA V GDW Q E V H++V+ Sbjct: 46 EAVHTTRTCNGRCKDAPVAIVYPSGDWYKQVTEKVAHRIVE 86
>ATS18_HUMAN (Q8TE60) ADAMTS-18 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 18) (ADAM-TS 18) (ADAM-TS18) Length = 1221 Score = 30.0 bits (66), Expect = 3.0 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 12/49 (24%) Frame = -3 Query: 429 ILHQLPGV----------RPQEPERASLRDALPW--LLPDHGICHHAVY 319 +LHQ P V P++ E S D W L+P HG+C+H Y Sbjct: 1161 LLHQKPPVLRACNTNFCPAPEKREDPSCVDFFNWCHLVPQHGVCNHKFY 1209
>ATS18_MOUSE (Q4VC17) ADAMTS-18 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 18) (ADAM-TS 18) (ADAM-TS18) Length = 1219 Score = 29.6 bits (65), Expect = 3.9 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 12/49 (24%) Frame = -3 Query: 429 ILHQLPGV----------RPQEPERASLRDALPW--LLPDHGICHHAVY 319 +LHQ P V P++ + S D W L+P HG+C+H Y Sbjct: 1159 LLHQKPPVLRACNTNFCPAPEKKDDPSCVDFFSWCHLVPQHGVCNHKFY 1207 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,210,738 Number of Sequences: 219361 Number of extensions: 891950 Number of successful extensions: 1971 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 1946 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1966 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
