ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd19g22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC144741.3| Oryza sativa (japonica cultivar-group) chromosome... 216 5e-53
2gb|AC084817.5| Oryza sativa (japonica cultivar-group) chromosome... 216 5e-53
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 216 5e-53
4dbj|AK100711.1| Oryza sativa (japonica cultivar-group) cDNA clon... 216 5e-53
5dbj|AK060842.1| Oryza sativa (japonica cultivar-group) cDNA clon... 216 5e-53
6gb|AY106059.1| Zea mays PCO095932 mRNA sequence 184 2e-43
7ref|XM_483157.1| Oryza sativa (japonica cultivar-group), mRNA 94 5e-16
8dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 94 5e-16
9dbj|AP000364.1| Oryza sativa (japonica cultivar-group) genomic D... 94 5e-16
10dbj|AP005148.3| Oryza sativa (japonica cultivar-group) genomic D... 94 5e-16
11dbj|AK102663.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 5e-16
12ref|XM_467531.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.10
13dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.10
14dbj|AP005052.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.10
15dbj|AK064958.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.10
16gb|AC102613.7| Mus musculus chromosome 1, clone RP23-418C16, com... 44 0.40
17emb|BX510337.13| Zebrafish DNA sequence from clone DKEY-27L20 in... 42 1.6
18emb|AL512510.13| Human DNA sequence from clone RP11-537P24 on ch... 42 1.6
19emb|BX004979.8| Zebrafish DNA sequence from clone DKEY-121H18 in... 42 1.6
20emb|AL954166.9| Zebrafish DNA sequence from clone DKEYP-120B11 i... 42 1.6
21ref|XM_635257.1| Dictyostelium discoideum hypothetical protein (... 40 6.2
22ref|XM_510985.1| PREDICTED: Pan troglodytes LOC454110 (LOC454110... 40 6.2
23gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome 40 6.2
24ref|NG_002690.1| Homo sapiens Prader-Willi/Angelman syndrome reg... 40 6.2
25gb|AC116598.3| Mus musculus BAC clone RP24-419D22 from chromosom... 40 6.2
26gb|AC105174.7| Mus musculus chromosome 5, clone RP24-230L5, comp... 40 6.2
27emb|CR380951.1| Candida glabrata strain CBS138 chromosome E comp... 40 6.2
28gb|AC124997.4| Homo sapiens chromosome 15, clone RP11-466L14, co... 40 6.2
29emb|BX640842.1|HSM806954 Homo sapiens mRNA; cDNA DKFZp686O13216 ... 40 6.2
30gb|AC155101.19| Medicago truncatula clone mth2-139j13, complete ... 40 6.2
31gb|AC118062.4| Homo sapiens BAC clone RP11-637E17 from 4, comple... 40 6.2
32dbj|AK097030.1| Homo sapiens cDNA FLJ39711 fis, clone SMINT2013032 40 6.2
33gb|AC110774.3| Homo sapiens BAC clone RP11-254A24 from 4, comple... 40 6.2
34gb|AF389420.1| Homo sapiens NOD27 (NOD27) mRNA, complete cds 40 6.2
35gb|AC124311.7| Homo sapiens chromosome 15, clone RP11-479F18, co... 40 6.2
36gb|AC023825.8| Homo sapiens chromosome 16 clone RP11-322D14, com... 40 6.2
37ref|NM_032206.2| Homo sapiens nucleotide-binding oligomerization... 40 6.2
38dbj|AK025362.1| Homo sapiens cDNA: FLJ21709 fis, clone COL10077 40 6.2
39dbj|AP000941.6| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 6.2
40gb|AC004738.1|AC004738 Homo sapiens Chromosome 15q11-q13 PAC clo... 40 6.2
41gb|AC034194.5| Homo sapiens chromosome 3 clone RP11-669E3 map 3p... 40 6.2
42gb|AC026204.5| Homo sapiens chromosome 3 clone RP11-590A20 map 3... 40 6.2
43dbj|AK090439.1| Homo sapiens mRNA for FLJ00359 protein 40 6.2
44dbj|AK074182.1| Homo sapiens mRNA for FLJ00255 protein 40 6.2 
>gb|AC144741.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0086E02,
              complete sequence
          Length = 150474

 Score =  216 bits (109), Expect = 5e-53
 Identities = 176/197 (89%), Gaps = 1/197 (0%)
 Strand = Plus / Plus

                                                                          
Query: 247    tctagtcaatcttaacagacgagaagaggtagtggacgaagtactaacgagagcaagaag 306
              ||||||||||||||||||| ||||||||||| |||||||||||  || || |||||||||
Sbjct: 124919 tctagtcaatcttaacagatgagaagaggtaatggacgaagtag-aaggacagcaagaag 124977

                                                                          
Query: 307    ccgatggcaccagtagacagcatgatggcaaatgccatgatcagggagtagccaaggtag 366
              || || |||||||||||||||||||||||||  |||||||||||||| ||||||||||||
Sbjct: 124978 ccaatagcaccagtagacagcatgatggcaagggccatgatcagggaatagccaaggtag 125037

                                                                          
Query: 367    agcgtcgcggagactggcccgctcaggctcctgaggtcgaacaccaggtagttgatggag 426
              ||||| || ||||| || || || |||||||| ||||||||||| ||||||||||| |||
Sbjct: 125038 agcgttgctgagaccggtccacttaggctcctaaggtcgaacacgaggtagttgattgag 125097

                               
Query: 427    tataggaagacgaagaa 443
              |||||||||||| ||||
Sbjct: 125098 tataggaagacgtagaa 125114
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>gb|AC084817.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0419C04,
             complete sequence
          Length = 136713

 Score =  216 bits (109), Expect = 5e-53
 Identities = 176/197 (89%), Gaps = 1/197 (0%)
 Strand = Plus / Plus

                                                                         
Query: 247   tctagtcaatcttaacagacgagaagaggtagtggacgaagtactaacgagagcaagaag 306
             ||||||||||||||||||| ||||||||||| |||||||||||  || || |||||||||
Sbjct: 23086 tctagtcaatcttaacagatgagaagaggtaatggacgaagtag-aaggacagcaagaag 23144

                                                                         
Query: 307   ccgatggcaccagtagacagcatgatggcaaatgccatgatcagggagtagccaaggtag 366
             || || |||||||||||||||||||||||||  |||||||||||||| ||||||||||||
Sbjct: 23145 ccaatagcaccagtagacagcatgatggcaagggccatgatcagggaatagccaaggtag 23204

                                                                         
Query: 367   agcgtcgcggagactggcccgctcaggctcctgaggtcgaacaccaggtagttgatggag 426
             ||||| || ||||| || || || |||||||| ||||||||||| ||||||||||| |||
Sbjct: 23205 agcgttgctgagaccggtccacttaggctcctaaggtcgaacacgaggtagttgattgag 23264

                              
Query: 427   tataggaagacgaagaa 443
             |||||||||||| ||||
Sbjct: 23265 tataggaagacgtagaa 23281
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score =  216 bits (109), Expect = 5e-53
 Identities = 176/197 (89%), Gaps = 1/197 (0%)
 Strand = Plus / Plus

                                                                           
Query: 247     tctagtcaatcttaacagacgagaagaggtagtggacgaagtactaacgagagcaagaag 306
               ||||||||||||||||||| ||||||||||| |||||||||||  || || |||||||||
Sbjct: 4047054 tctagtcaatcttaacagatgagaagaggtaatggacgaagtag-aaggacagcaagaag 4047112

                                                                           
Query: 307     ccgatggcaccagtagacagcatgatggcaaatgccatgatcagggagtagccaaggtag 366
               || || |||||||||||||||||||||||||  |||||||||||||| ||||||||||||
Sbjct: 4047113 ccaatagcaccagtagacagcatgatggcaagggccatgatcagggaatagccaaggtag 4047172

                                                                           
Query: 367     agcgtcgcggagactggcccgctcaggctcctgaggtcgaacaccaggtagttgatggag 426
               ||||| || ||||| || || || |||||||| ||||||||||| ||||||||||| |||
Sbjct: 4047173 agcgttgctgagaccggtccacttaggctcctaaggtcgaacacgaggtagttgattgag 4047232

                                
Query: 427     tataggaagacgaagaa 443
               |||||||||||| ||||
Sbjct: 4047233 tataggaagacgtagaa 4047249
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>dbj|AK100711.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023115H14, full
            insert sequence
          Length = 2407

 Score =  216 bits (109), Expect = 5e-53
 Identities = 176/197 (89%), Gaps = 1/197 (0%)
 Strand = Plus / Minus

                                                                        
Query: 247  tctagtcaatcttaacagacgagaagaggtagtggacgaagtactaacgagagcaagaag 306
            ||||||||||||||||||| ||||||||||| |||||||||||  || || |||||||||
Sbjct: 2087 tctagtcaatcttaacagatgagaagaggtaatggacgaagtag-aaggacagcaagaag 2029

                                                                        
Query: 307  ccgatggcaccagtagacagcatgatggcaaatgccatgatcagggagtagccaaggtag 366
            || || |||||||||||||||||||||||||  |||||||||||||| ||||||||||||
Sbjct: 2028 ccaatagcaccagtagacagcatgatggcaagggccatgatcagggaatagccaaggtag 1969

                                                                        
Query: 367  agcgtcgcggagactggcccgctcaggctcctgaggtcgaacaccaggtagttgatggag 426
            ||||| || ||||| || || || |||||||| ||||||||||| ||||||||||| |||
Sbjct: 1968 agcgttgctgagaccggtccacttaggctcctaaggtcgaacacgaggtagttgattgag 1909

                             
Query: 427  tataggaagacgaagaa 443
            |||||||||||| ||||
Sbjct: 1908 tataggaagacgtagaa 1892
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>dbj|AK060842.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D06, full
           insert sequence
          Length = 1089

 Score =  216 bits (109), Expect = 5e-53
 Identities = 176/197 (89%), Gaps = 1/197 (0%)
 Strand = Plus / Minus

                                                                       
Query: 247 tctagtcaatcttaacagacgagaagaggtagtggacgaagtactaacgagagcaagaag 306
           ||||||||||||||||||| ||||||||||| |||||||||||  || || |||||||||
Sbjct: 760 tctagtcaatcttaacagatgagaagaggtaatggacgaagtag-aaggacagcaagaag 702

                                                                       
Query: 307 ccgatggcaccagtagacagcatgatggcaaatgccatgatcagggagtagccaaggtag 366
           || || |||||||||||||||||||||||||  |||||||||||||| ||||||||||||
Sbjct: 701 ccaatagcaccagtagacagcatgatggcaagggccatgatcagggaatagccaaggtag 642

                                                                       
Query: 367 agcgtcgcggagactggcccgctcaggctcctgaggtcgaacaccaggtagttgatggag 426
           ||||| || ||||| || || || |||||||| ||||||||||| ||||||||||| |||
Sbjct: 641 agcgttgctgagaccggtccacttaggctcctaaggtcgaacacgaggtagttgattgag 582

                            
Query: 427 tataggaagacgaagaa 443
           |||||||||||| ||||
Sbjct: 581 tataggaagacgtagaa 565
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>gb|AY106059.1| Zea mays PCO095932 mRNA sequence
          Length = 1115

 Score =  184 bits (93), Expect = 2e-43
 Identities = 184/213 (86%), Gaps = 1/213 (0%)
 Strand = Plus / Minus

                                                                        
Query: 247  tctagtcaatcttaacagacgagaagaggtagtggacgaagtactaacgagagcaagaag 306
            |||| ||||||||||||||||||||||||||||||||||||||  || ||||||| ||| 
Sbjct: 1029 tctaatcaatcttaacagacgagaagaggtagtggacgaagtag-aaggagagcaggaaa 971

                                                                        
Query: 307  ccgatggcaccagtagacagcatgatggcaaatgccatgatcagggagtagccaaggtag 366
            || ||||| ||||| || |||||||| ||||  |||||||||||||| ||||||||||||
Sbjct: 970  ccaatggcgccagtggagagcatgattgcaagggccatgatcagggaatagccaaggtag 911

                                                                        
Query: 367  agcgtcgcggagactggcccgctcaggctcctgaggtcgaacaccaggtagttgatggag 426
            || || || || ||||| ||||||||||||||||| ||||||||||||||||| || |||
Sbjct: 910  agtgtggcagaaactggtccgctcaggctcctgagatcgaacaccaggtagttaatagag 851

                                             
Query: 427  tataggaagacgaagaaagcaacggagccagaa 459
            || ||||| ||  |||| || || |||||||||
Sbjct: 850  tagaggaacacatagaatgcgacagagccagaa 818
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>ref|XM_483157.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2616

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 95/111 (85%)
 Strand = Plus / Minus

                                                                        
Query: 324  cagcatgatggcaaatgccatgatcagggagtagccaaggtagagcgtcgcggagactgg 383
            ||||||||| |||||||||||||  |  ||||| |||||||| ||| | || ||||| ||
Sbjct: 2064 cagcatgattgcaaatgccatgaggaatgagtaaccaaggtaaagcatggcagagacagg 2005

                                                               
Query: 384  cccgctcaggctcctgaggtcgaacaccaggtagttgatggagtataggaa 434
            |||||||||||| |||||||| || |||| ||||||||||||||| |||||
Sbjct: 2004 cccgctcaggcttctgaggtcaaataccaagtagttgatggagtagaggaa 1954
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 95/111 (85%)
 Strand = Plus / Plus

                                                                            
Query: 324      cagcatgatggcaaatgccatgatcagggagtagccaaggtagagcgtcgcggagactgg 383
                ||||||||| |||||||||||||  |  ||||| |||||||| ||| | || ||||| ||
Sbjct: 24530996 cagcatgattgcaaatgccatgaggaatgagtaaccaaggtaaagcatggcagagacagg 24531055

                                                                   
Query: 384      cccgctcaggctcctgaggtcgaacaccaggtagttgatggagtataggaa 434
                |||||||||||| |||||||| || |||| ||||||||||||||| |||||
Sbjct: 24531056 cccgctcaggcttctgaggtcaaataccaagtagttgatggagtagaggaa 24531106
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>dbj|AP000364.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0026F07
          Length = 137354

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 95/111 (85%)
 Strand = Plus / Plus

                                                                         
Query: 324   cagcatgatggcaaatgccatgatcagggagtagccaaggtagagcgtcgcggagactgg 383
             ||||||||| |||||||||||||  |  ||||| |||||||| ||| | || ||||| ||
Sbjct: 39256 cagcatgattgcaaatgccatgaggaatgagtaaccaaggtaaagcatggcagagacagg 39315

                                                                
Query: 384   cccgctcaggctcctgaggtcgaacaccaggtagttgatggagtataggaa 434
             |||||||||||| |||||||| || |||| ||||||||||||||| |||||
Sbjct: 39316 cccgctcaggcttctgaggtcaaataccaagtagttgatggagtagaggaa 39366
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>dbj|AP005148.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:B1142B04
          Length = 161964

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 95/111 (85%)
 Strand = Plus / Plus

                                                                          
Query: 324    cagcatgatggcaaatgccatgatcagggagtagccaaggtagagcgtcgcggagactgg 383
              ||||||||| |||||||||||||  |  ||||| |||||||| ||| | || ||||| ||
Sbjct: 146712 cagcatgattgcaaatgccatgaggaatgagtaaccaaggtaaagcatggcagagacagg 146771

                                                                 
Query: 384    cccgctcaggctcctgaggtcgaacaccaggtagttgatggagtataggaa 434
              |||||||||||| |||||||| || |||| ||||||||||||||| |||||
Sbjct: 146772 cccgctcaggcttctgaggtcaaataccaagtagttgatggagtagaggaa 146822
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>dbj|AK102663.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101K01, full
            insert sequence
          Length = 2616

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 95/111 (85%)
 Strand = Plus / Minus

                                                                        
Query: 324  cagcatgatggcaaatgccatgatcagggagtagccaaggtagagcgtcgcggagactgg 383
            ||||||||| |||||||||||||  |  ||||| |||||||| ||| | || ||||| ||
Sbjct: 2064 cagcatgattgcaaatgccatgaggaatgagtaaccaaggtaaagcatggcagagacagg 2005

                                                               
Query: 384  cccgctcaggctcctgaggtcgaacaccaggtagttgatggagtataggaa 434
            |||||||||||| |||||||| || |||| ||||||||||||||| |||||
Sbjct: 2004 cccgctcaggcttctgaggtcaaataccaagtagttgatggagtagaggaa 1954
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>ref|XM_467531.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2341

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 252  tcaatcttaacagacgagaagaggtagtggacgaa 286
            ||||||||||| || ||||| ||||||||||||||
Sbjct: 2141 tcaatcttaactgatgagaaaaggtagtggacgaa 2107
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 252      tcaatcttaacagacgagaagaggtagtggacgaa 286
                ||||||||||| || ||||| ||||||||||||||
Sbjct: 30005774 tcaatcttaactgatgagaaaaggtagtggacgaa 30005740
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>dbj|AP005052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0654B04
          Length = 156907

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                 
Query: 252    tcaatcttaacagacgagaagaggtagtggacgaa 286
              ||||||||||| || ||||| ||||||||||||||
Sbjct: 106050 tcaatcttaactgatgagaaaaggtagtggacgaa 106016
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>dbj|AK064958.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001A11, full
            insert sequence
          Length = 2341

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 252  tcaatcttaacagacgagaagaggtagtggacgaa 286
            ||||||||||| || ||||| ||||||||||||||
Sbjct: 2141 tcaatcttaactgatgagaaaaggtagtggacgaa 2107
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>gb|AC102613.7| Mus musculus chromosome 1, clone RP23-418C16, complete sequence
          Length = 201275

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 178    agttatttgtgtttgtgtttct 199
              ||||||||||||||||||||||
Sbjct: 147193 agttatttgtgtttgtgtttct 147172
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>emb|BX510337.13| Zebrafish DNA sequence from clone DKEY-27L20 in linkage group 9,
             complete sequence
          Length = 170615

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 176   acagttatttgtgtttgtgtt 196
             |||||||||||||||||||||
Sbjct: 35298 acagttatttgtgtttgtgtt 35278
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>emb|AL512510.13| Human DNA sequence from clone RP11-537P24 on chromosome 6 Contains a
             CpG island, complete sequence
          Length = 170970

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 161   caatttttcagtttgacagtt 181
             |||||||||||||||||||||
Sbjct: 47139 caatttttcagtttgacagtt 47119
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>emb|BX004979.8| Zebrafish DNA sequence from clone DKEY-121H18 in linkage group 7,
             complete sequence
          Length = 186642

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 163   atttttcagtttgacagttatttgt 187
             |||||||||||| ||||||||||||
Sbjct: 95099 atttttcagttttacagttatttgt 95075
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>emb|AL954166.9| Zebrafish DNA sequence from clone DKEYP-120B11 in linkage group 20,
             complete sequence
          Length = 186299

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 163   atttttcagtttgacagttatttgt 187
             |||||||||||| ||||||||||||
Sbjct: 94756 atttttcagttttacagttatttgt 94732
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>ref|XM_635257.1| Dictyostelium discoideum hypothetical protein (DDB0218367), partial
            mRNA
          Length = 2947

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 182  atttgtgtttgtgtttctaa 201
            ||||||||||||||||||||
Sbjct: 2535 atttgtgtttgtgtttctaa 2516
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>ref|XM_510985.1| PREDICTED: Pan troglodytes LOC454110 (LOC454110), mRNA
          Length = 6198

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 376  gagactggcccgctcaggctcctg 399
            |||||||||| |||||||||||||
Sbjct: 2319 gagactggccagctcaggctcctg 2296
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>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome
          Length = 2560265

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 361     aggtagagcgtcgcggagactggcccgc 388
               ||||||| ||||||| ||||||||||||
Sbjct: 2118371 aggtagatcgtcgcgaagactggcccgc 2118398
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>ref|NG_002690.1| Homo sapiens Prader-Willi/Angelman syndrome region (PWSAS@) on chromosome
              15
          Length = 755217

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 163    atttttcagtttgacagttatttg 186
              ||||||||||||||||||| ||||
Sbjct: 714335 atttttcagtttgacagttttttg 714312
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>gb|AC116598.3| Mus musculus BAC clone RP24-419D22 from chromosome 5, complete sequence
          Length = 175438

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    aaacatgtctaagaagtaaa 110
             ||||||||||||||||||||
Sbjct: 46198 aaacatgtctaagaagtaaa 46179
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>gb|AC105174.7| Mus musculus chromosome 5, clone RP24-230L5, complete sequence
          Length = 179947

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    aaacatgtctaagaagtaaa 110
             ||||||||||||||||||||
Sbjct: 71712 aaacatgtctaagaagtaaa 71731
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>emb|CR380951.1| Candida glabrata strain CBS138 chromosome E complete sequence
          Length = 687501

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 151    catatgttcccaatttttcagttt 174
              ||||| ||||||||||||||||||
Sbjct: 339749 catattttcccaatttttcagttt 339726
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>gb|AC124997.4| Homo sapiens chromosome 15, clone RP11-466L14, complete sequence
          Length = 179810

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 163    atttttcagtttgacagttatttg 186
              ||||||||||||||||||| ||||
Sbjct: 138928 atttttcagtttgacagttttttg 138905
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>emb|BX640842.1|HSM806954 Homo sapiens mRNA; cDNA DKFZp686O13216 (from clone DKFZp686O13216)
          Length = 2811

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 376 gagactggcccgctcaggctcctg 399
           |||||||||| |||||||||||||
Sbjct: 552 gagactggccagctcaggctcctg 529
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>gb|AC155101.19| Medicago truncatula clone mth2-139j13, complete sequence
          Length = 124152

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 183   tttgtgtttgtgtttctaaggata 206
             ||||||||| ||||||||||||||
Sbjct: 64371 tttgtgtttttgtttctaaggata 64348
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>gb|AC118062.4| Homo sapiens BAC clone RP11-637E17 from 4, complete sequence
          Length = 107609

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 114   taaagctggagtaactgtgc 133
             ||||||||||||||||||||
Sbjct: 96610 taaagctggagtaactgtgc 96591
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>dbj|AK097030.1| Homo sapiens cDNA FLJ39711 fis, clone SMINT2013032
          Length = 2712

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 376  gagactggcccgctcaggctcctg 399
            |||||||||| |||||||||||||
Sbjct: 2067 gagactggccagctcaggctcctg 2044
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>gb|AC110774.3| Homo sapiens BAC clone RP11-254A24 from 4, complete sequence
          Length = 121016

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 156   gttcccaatttttcagtttg 175
             ||||||||||||||||||||
Sbjct: 35001 gttcccaatttttcagtttg 35020
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>gb|AF389420.1| Homo sapiens NOD27 (NOD27) mRNA, complete cds
          Length = 5601

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 376  gagactggcccgctcaggctcctg 399
            |||||||||| |||||||||||||
Sbjct: 1890 gagactggccagctcaggctcctg 1867
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>gb|AC124311.7| Homo sapiens chromosome 15, clone RP11-479F18, complete sequence
          Length = 142745

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 163   atttttcagtttgacagttatttg 186
             ||||||||||||||||||| ||||
Sbjct: 64934 atttttcagtttgacagttttttg 64911
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>gb|AC023825.8| Homo sapiens chromosome 16 clone RP11-322D14, complete sequence
          Length = 217521

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 376    gagactggcccgctcaggctcctg 399
              |||||||||| |||||||||||||
Sbjct: 152377 gagactggccagctcaggctcctg 152400
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>ref|NM_032206.2| Homo sapiens nucleotide-binding oligomerization domains 27 (NOD27),
            mRNA
          Length = 5601

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 376  gagactggcccgctcaggctcctg 399
            |||||||||| |||||||||||||
Sbjct: 1890 gagactggccagctcaggctcctg 1867
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>dbj|AK025362.1| Homo sapiens cDNA: FLJ21709 fis, clone COL10077
          Length = 3495

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 376  gagactggcccgctcaggctcctg 399
            |||||||||| |||||||||||||
Sbjct: 1149 gagactggccagctcaggctcctg 1126
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>dbj|AP000941.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-861M13, complete
             sequence
          Length = 199321

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 176   acagttatttgtgtttgtgt 195
             ||||||||||||||||||||
Sbjct: 52899 acagttatttgtgtttgtgt 52918
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>gb|AC004738.1|AC004738 Homo sapiens Chromosome 15q11-q13 PAC clone pDJ351h23 from the
             Prader-Willi/Angelman Syndrome region, complete sequence
          Length = 147404

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 163   atttttcagtttgacagttatttg 186
             ||||||||||||||||||| ||||
Sbjct: 53505 atttttcagtttgacagttttttg 53482
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>gb|AC034194.5| Homo sapiens chromosome 3 clone RP11-669E3 map 3p, complete sequence
          Length = 179255

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 176  acagttatttgtgtttgtgtttct 199
            |||||||||| |||||||||||||
Sbjct: 5649 acagttatttatgtttgtgtttct 5626
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>gb|AC026204.5| Homo sapiens chromosome 3 clone RP11-590A20 map 3p, complete sequence
          Length = 171061

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 176   acagttatttgtgtttgtgtttct 199
             |||||||||| |||||||||||||
Sbjct: 97249 acagttatttatgtttgtgtttct 97226
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>dbj|AK090439.1| Homo sapiens mRNA for FLJ00359 protein
          Length = 5833

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 376  gagactggcccgctcaggctcctg 399
            |||||||||| |||||||||||||
Sbjct: 1072 gagactggccagctcaggctcctg 1049
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>dbj|AK074182.1| Homo sapiens mRNA for FLJ00255 protein
          Length = 4520

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 376  gagactggcccgctcaggctcctg 399
            |||||||||| |||||||||||||
Sbjct: 2030 gagactggccagctcaggctcctg 2007


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,657,369
Number of Sequences: 3902068
Number of extensions: 3657369
Number of successful extensions: 69879
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69717
Number of HSP's gapped (non-prelim): 156
length of query: 461
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 439
effective length of database: 17,147,199,772
effective search space: 7527620699908
effective search space used: 7527620699908
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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