>HXAAB_BRARE (Q8AWY2) Homeobox protein Hox-A10b (Hox-A10)|
          Length = 330

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -3

Query: 546 DSPPTCCRTCPGVAPCSF*RQLREGGRNRIIRCASGTPSAPQSPE 412
           D PPTC       APC+        GRN+ +R ++GT S+P+ P+
Sbjct: 198 DEPPTC-------APCA-------PGRNKELRGSTGTASSPEPPD 228

>PRIA_ECOLI (P17888) Primosomal protein N' (EC 3.6.1.-) (ATP-dependent helicase|
           priA) (Replication factor Y)
          Length = 732

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = -1

Query: 527 AAPALESLHVHFDDNSEKAGATGSSDVQAEHHQHHNHLKELVVIGFDGAAWQTCFVKRVM 348
           +A     L+      + +AG  G   +Q  HH  H  L+ L+  G+D  A Q    +R+M
Sbjct: 570 SAERFAQLYTQVAGRAGRAGKQGEVVLQT-HHPEHPLLQTLLYKGYDAFAEQALAERRMM 628

Query: 347 QASP 336
           Q  P
Sbjct: 629 QLPP 632

>ECHP_MOUSE (Q9DBM2) Peroxisomal bifunctional enzyme (PBE) (PBFE) [Includes:|
           Enoyl-CoA hydratase (EC 4.2.1.17); 3,2-trans-enoyl-CoA
           isomerase (EC 5.3.3.8); 3-hydroxyacyl-CoA dehydrogenase
           (EC 1.1.1.35)]
          Length = 717

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -3

Query: 444 SGTPSAPQSPERARGHRLRRGGVADMLCEAGHAG 343
           +G    P +P R RG+  R   +ADMLCEAG  G
Sbjct: 534 TGPSLPPGTPTRKRGNT-RYSPIADMLCEAGRFG 566

>KSGA_PSEAE (Q9I5U5) Dimethyladenosine transferase (EC 2.1.1.-)|
           (S-adenosylmethionine-6-N', N'-adenosyl(rRNA)
           dimethyltransferase) (16S rRNA dimethylase) (High level
           kasugamycin resistance protein ksgA) (Kasugamycin
           dimethyltransferase)
          Length = 268

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
 Frame = -1

Query: 581 IANVPMNWDTFWILHLLAAAPALESLHVHFD-DNSEKAGAT------GSSDVQAEHHQHH 423
           + N+P N  T  I HLL  AP +E +H     +  E+  AT      G   +  ++H   
Sbjct: 108 VGNLPYNISTPLIFHLLEHAPVIEDMHFMLQKEVVERLAATPGGGDWGRLSIMVQYHCRV 167

Query: 422 NHL 414
            HL
Sbjct: 168 EHL 170

>ARR16_ARATH (Q9SHC2) Two-component response regulator ARR16|
          Length = 164

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -1

Query: 485 NSEKAGATGSSDVQA-EHHQHHNHLKELVVIGFDGAAWQTCFVKRVMQAS 339
           NS     +   DV A +HH HH H +EL V+  D        V+R+++ S
Sbjct: 2   NSSGGSCSSLMDVVAYDHHLHHGHDEELHVLAVDDNLIDRKLVERLLKIS 51

>FKH_DROME (P14734) Fork head protein|
          Length = 510

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 518 ALESLHVHFDDNSEKAGATGSSDVQAEHHQHHNHLKEL 405
           A+  LH     +S +A + G  D +  HH HH+H   L
Sbjct: 313 AIRQLHKSPSHSSLEATSPGKKDHEDSHHMHHHHHSRL 350


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,657,036
Number of Sequences: 219361
Number of extensions: 1904072
Number of successful extensions: 6410
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6225
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6598423128
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)