ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd19g17 |
|---|---|
| Clone Library Name | barley_pub |
>PSA3_ORYSA (Q9LSU0) Proteasome subunit alpha type 3 (EC 3.4.25.1) (20S| proteasome alpha subunit G) (20S proteasome subunit alpha-7) Length = 249 Score = 111 bits (277), Expect(2) = 9e-33 Identities = 53/62 (85%), Positives = 57/62 (91%) Frame = -2 Query: 436 KEDSAAKTEIEXLKLSELTCREGIVEVAKIIYGIXDEAKDKSFELELSWVCDESNRQHEK 257 K AAKTEIE LKLSELTCREGIVEVAKIIYG+ DEAKDK+FELELSW+CDESNRQH+K Sbjct: 167 KGRQAAKTEIEKLKLSELTCREGIVEVAKIIYGVHDEAKDKAFELELSWICDESNRQHQK 226 Query: 256 VP 251 VP Sbjct: 227 VP 228 Score = 48.1 bits (113), Expect(2) = 9e-33 Identities = 21/25 (84%), Positives = 22/25 (88%) Frame = -1 Query: 491 YMIEPSGLSYKYFGXALGKGRQRCK 417 YMIEPSG+SYKYFG ALGKGRQ K Sbjct: 149 YMIEPSGVSYKYFGAALGKGRQAAK 173
>PSA3_SPIOL (O24362) Proteasome subunit alpha type 3 (EC 3.4.25.1) (20S| proteasome alpha subunit G) (20S proteasome subunit alpha-7) (Proteasome component C8) Length = 249 Score = 103 bits (257), Expect(2) = 1e-29 Identities = 47/63 (74%), Positives = 56/63 (88%) Frame = -2 Query: 436 KEDSAAKTEIEXLKLSELTCREGIVEVAKIIYGIXDEAKDKSFELELSWVCDESNRQHEK 257 K AAKTEIE LKLSE+TCREGI+EVAKIIY + DEAKDK+FELE+SW+CDES R+H+K Sbjct: 167 KGKQAAKTEIEKLKLSEMTCREGIIEVAKIIYKVHDEAKDKAFELEMSWICDESKREHQK 226 Query: 256 VPN 248 VP+ Sbjct: 227 VPD 229 Score = 45.1 bits (105), Expect(2) = 1e-29 Identities = 17/25 (68%), Positives = 22/25 (88%) Frame = -1 Query: 491 YMIEPSGLSYKYFGXALGKGRQRCK 417 YM+EPSG+SY+YFG A+GKG+Q K Sbjct: 149 YMVEPSGISYRYFGAAIGKGKQAAK 173
>PSA3_ARATH (O23715) Proteasome subunit alpha type 3 (EC 3.4.25.1) (Proteasome| subunit alpha type 7) (20S proteasome alpha subunit G-1) (Proteasome component 8) (DiDi 17A-2a) Length = 249 Score = 98.2 bits (243), Expect(2) = 5e-28 Identities = 43/63 (68%), Positives = 55/63 (87%) Frame = -2 Query: 436 KEDSAAKTEIEXLKLSELTCREGIVEVAKIIYGIXDEAKDKSFELELSWVCDESNRQHEK 257 K AAKTEIE L LSE+TC+EG++EVAKIIY + DEAKDK+FELE+SW+C+ES R+H+K Sbjct: 167 KGKQAAKTEIEKLNLSEMTCKEGVIEVAKIIYKLHDEAKDKAFELEMSWICEESKREHQK 226 Query: 256 VPN 248 VP+ Sbjct: 227 VPD 229 Score = 45.4 bits (106), Expect(2) = 5e-28 Identities = 18/25 (72%), Positives = 22/25 (88%) Frame = -1 Query: 491 YMIEPSGLSYKYFGXALGKGRQRCK 417 YMIEPSG+SY+YFG A+GKG+Q K Sbjct: 149 YMIEPSGISYRYFGAAIGKGKQAAK 173
>PSA3_ACACA (P90513) Proteasome subunit alpha type 3 (EC 3.4.25.1) (Fragment)| Length = 252 Score = 84.3 bits (207), Expect(2) = 5e-22 Identities = 40/58 (68%), Positives = 47/58 (81%) Frame = -2 Query: 424 AAKTEIEXLKLSELTCREGIVEVAKIIYGIXDEAKDKSFELELSWVCDESNRQHEKVP 251 AAKTEIE LKLSE+T RE I E AKIIY + D+AKDK+FELELSWVC+E+ H+ VP Sbjct: 169 AAKTEIEKLKLSEMTAREAIKEAAKIIYSVHDDAKDKAFELELSWVCEETGNLHKFVP 226 Score = 38.9 bits (89), Expect(2) = 5e-22 Identities = 16/25 (64%), Positives = 20/25 (80%) Frame = -1 Query: 491 YMIEPSGLSYKYFGXALGKGRQRCK 417 YMIEPSG+S+ YFG A+GKG + K Sbjct: 147 YMIEPSGISWGYFGVAIGKGARAAK 171
>PSA3_HUMAN (P25788) Proteasome subunit alpha type 3 (EC 3.4.25.1) (Proteasome| component C8) (Macropain subunit C8) (Multicatalytic endopeptidase complex subunit C8) Length = 254 Score = 77.8 bits (190), Expect(2) = 6e-20 Identities = 38/62 (61%), Positives = 48/62 (77%) Frame = -2 Query: 436 KEDSAAKTEIEXLKLSELTCREGIVEVAKIIYGIXDEAKDKSFELELSWVCDESNRQHEK 257 K AAKTEIE L++ E+TCR+ + EVAKIIY + DE KDK+FELELSWV + +N +HE Sbjct: 167 KARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEI 226 Query: 256 VP 251 VP Sbjct: 227 VP 228 Score = 38.5 bits (88), Expect(2) = 6e-20 Identities = 16/25 (64%), Positives = 20/25 (80%) Frame = -1 Query: 491 YMIEPSGLSYKYFGXALGKGRQRCK 417 YMI+PSG+SY Y+G A+GK RQ K Sbjct: 149 YMIDPSGVSYGYWGCAIGKARQAAK 173
>PSA3_RAT (P18422) Proteasome subunit alpha type 3 (EC 3.4.25.1) (Proteasome| component C8) (Macropain subunit C8) (Multicatalytic endopeptidase complex subunit C8) (Proteasome subunit K) Length = 254 Score = 75.9 bits (185), Expect(2) = 2e-19 Identities = 37/62 (59%), Positives = 47/62 (75%) Frame = -2 Query: 436 KEDSAAKTEIEXLKLSELTCREGIVEVAKIIYGIXDEAKDKSFELELSWVCDESNRQHEK 257 K AAKTEIE L++ E+TCR+ + EVAKIIY + DE KDK+FELELSWV + + +HE Sbjct: 167 KARQAAKTEIEKLQMKEMTCRDVVKEVAKIIYIVHDEVKDKAFELELSWVGELTKGRHEI 226 Query: 256 VP 251 VP Sbjct: 227 VP 228 Score = 38.5 bits (88), Expect(2) = 2e-19 Identities = 16/25 (64%), Positives = 20/25 (80%) Frame = -1 Query: 491 YMIEPSGLSYKYFGXALGKGRQRCK 417 YMI+PSG+SY Y+G A+GK RQ K Sbjct: 149 YMIDPSGVSYGYWGCAIGKARQAAK 173
>PSA3_MOUSE (O70435) Proteasome subunit alpha type 3 (EC 3.4.25.1) (Proteasome| component C8) (Macropain subunit C8) (Multicatalytic endopeptidase complex subunit C8) (Proteasome subunit K) Length = 254 Score = 75.9 bits (185), Expect(2) = 2e-19 Identities = 37/62 (59%), Positives = 47/62 (75%) Frame = -2 Query: 436 KEDSAAKTEIEXLKLSELTCREGIVEVAKIIYGIXDEAKDKSFELELSWVCDESNRQHEK 257 K AAKTEIE L++ E+TCR+ + EVAKIIY + DE KDK+FELELSWV + + +HE Sbjct: 167 KARQAAKTEIEKLQMKEMTCRDVVKEVAKIIYIVHDEVKDKAFELELSWVGELTKGRHEI 226 Query: 256 VP 251 VP Sbjct: 227 VP 228 Score = 38.5 bits (88), Expect(2) = 2e-19 Identities = 16/25 (64%), Positives = 20/25 (80%) Frame = -1 Query: 491 YMIEPSGLSYKYFGXALGKGRQRCK 417 YMI+PSG+SY Y+G A+GK RQ K Sbjct: 149 YMIDPSGVSYGYWGCAIGKARQAAK 173
>PSA3_DICDI (Q27563) Proteasome subunit alpha type 3 (EC 3.4.25.1)| Length = 248 Score = 74.7 bits (182), Expect(2) = 2e-18 Identities = 33/62 (53%), Positives = 44/62 (70%) Frame = -2 Query: 436 KEDSAAKTEIEXLKLSELTCREGIVEVAKIIYGIXDEAKDKSFELELSWVCDESNRQHEK 257 K AAK E+E ++ SE+TCRE I EV++IIY + DE KDK FELEL W+ E++ H+ Sbjct: 167 KGKQAAKNELEEIRFSEMTCREAIKEVSRIIYSVHDEVKDKDFELELGWISTETDNVHQI 226 Query: 256 VP 251 VP Sbjct: 227 VP 228 Score = 36.2 bits (82), Expect(2) = 2e-18 Identities = 14/26 (53%), Positives = 19/26 (73%) Frame = -1 Query: 491 YMIEPSGLSYKYFGXALGKGRQRCKN 414 +++EPSG YFG +LGKG+Q KN Sbjct: 149 FLVEPSGSCVGYFGASLGKGKQAAKN 174
>PSA3_SCHPO (O59770) Probable proteasome subunit alpha type 3 (EC 3.4.25.1)| Length = 253 Score = 50.4 bits (119), Expect(2) = 1e-10 Identities = 23/63 (36%), Positives = 36/63 (57%) Frame = -2 Query: 436 KEDSAAKTEIEXLKLSELTCREGIVEVAKIIYGIXDEAKDKSFELELSWVCDESNRQHEK 257 K A+ E+E L S L ++ + E A+I+Y DE +K E+E++WV E+N H Sbjct: 166 KGRQVARNELEKLNFSSLKMKDAVKEAARILYATHDEENNKEHEIEMTWVGVETNGIHTP 225 Query: 256 VPN 248 VP+ Sbjct: 226 VPD 228 Score = 34.7 bits (78), Expect(2) = 1e-10 Identities = 14/26 (53%), Positives = 19/26 (73%) Frame = -1 Query: 491 YMIEPSGLSYKYFGXALGKGRQRCKN 414 YM+EP+G+ + Y G A GKGRQ +N Sbjct: 148 YMVEPNGVYWGYNGAAAGKGRQVARN 173
>PSA3_CAEEL (Q09583) Proteasome subunit alpha type 3 (EC 3.4.25.1) (Proteasome| subunit alpha 7) Length = 249 Score = 59.3 bits (142), Expect = 5e-09 Identities = 30/79 (37%), Positives = 49/79 (62%), Gaps = 2/79 (2%) Frame = -2 Query: 478 LQGSHINILVLLWV--KEDSAAKTEIEXLKLSELTCREGIVEVAKIIYGIXDEAKDKSFE 305 ++ S +N W K AAK EIE LK+ EL + + E A+II + DE KDK+ + Sbjct: 150 VEPSGLNYEYKAWAVGKHRQAAKAEIEKLKIEELDVNQLVKEAARIIMVVRDENKDKNVQ 209 Query: 304 LELSWVCDESNRQHEKVPN 248 +E+ WV +++N ++E+VP+ Sbjct: 210 IEMGWVGEQTNGKYEEVPS 228 Score = 32.7 bits (73), Expect = 0.54 Identities = 13/25 (52%), Positives = 19/25 (76%) Frame = -1 Query: 491 YMIEPSGLSYKYFGXALGKGRQRCK 417 +++EPSGL+Y+Y A+GK RQ K Sbjct: 148 FLVEPSGLNYEYKAWAVGKHRQAAK 172
>PSA3_YEAST (P21242) Proteasome component C1 (EC 3.4.25.1) (Macropain subunit| C1) (Proteinase YSCE subunit 1) (Multicatalytic endopeptidase complex subunit C1) Length = 287 Score = 42.0 bits (97), Expect(2) = 5e-08 Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 4/65 (6%) Frame = -2 Query: 436 KEDSAAKTEIEXL---KLSELTCREGIVEVAKIIYGIXDEAKDKSFELELSWV-CDESNR 269 K +AK E+E L L+ RE + + AKIIY ++ K+K FELE+SW E+N Sbjct: 166 KGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNG 225 Query: 268 QHEKV 254 H+ V Sbjct: 226 LHKFV 230 Score = 33.9 bits (76), Expect(2) = 5e-08 Identities = 15/25 (60%), Positives = 17/25 (68%) Frame = -1 Query: 491 YMIEPSGLSYKYFGXALGKGRQRCK 417 YM+EPSG + Y G A GKGRQ K Sbjct: 148 YMLEPSGSYWGYKGAATGKGRQSAK 172
>PSA3_DROME (Q9V5C6) Proteasome subunit alpha type 3 (EC 3.4.25.1) (20S| proteasome subunit alpha-7) Length = 253 Score = 37.0 bits (84), Expect(2) = 9e-06 Identities = 20/50 (40%), Positives = 28/50 (56%) Frame = -2 Query: 436 KEDSAAKTEIEXLKLSELTCREGIVEVAKIIYGIXDEAKDKSFELELSWV 287 K AKTE+E LK+ ++ E + +IIY + DE KDK F E+ V Sbjct: 168 KAKQLAKTEMEKLKM-DMRTDELVESAGEIIYKVHDELKDKDFRFEMGLV 216 Score = 31.2 bits (69), Expect(2) = 9e-06 Identities = 14/25 (56%), Positives = 16/25 (64%) Frame = -1 Query: 491 YMIEPSGLSYKYFGXALGKGRQRCK 417 Y IEPSG S+ YF A GK +Q K Sbjct: 150 YKIEPSGSSFGYFACASGKAKQLAK 174
>PGBM_HUMAN (P98160) Basement membrane-specific heparan sulfate proteoglycan core| protein precursor (HSPG) (Perlecan) (PLC) Length = 4391 Score = 29.3 bits (64), Expect = 6.0 Identities = 15/36 (41%), Positives = 18/36 (50%) Frame = +2 Query: 26 QXTRTCYLDWDGIIEPKATAPXGSXXH*KRTAPVLY 133 Q TC+LD DG A +P S H +R AP Y Sbjct: 1219 QAAHTCFLDTDGHPTCDACSPGHSGRHCERCAPGYY 1254 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,075,687 Number of Sequences: 219361 Number of extensions: 900196 Number of successful extensions: 2260 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2216 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2260 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3478785780 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
