ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd19g17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_191042.1| Oryza sativa (japonica cultivar-group), predic... 254 2e-64
2dbj|AK103541.1| Oryza sativa (japonica cultivar-group) cDNA clon... 254 2e-64
3dbj|AB026562.1| Oryza sativa (japonica cultivar-group) OsPAG1 mR... 254 2e-64
4dbj|AK061784.1| Oryza sativa (japonica cultivar-group) cDNA clon... 248 1e-62
5ref|XM_475461.1| Oryza sativa (japonica cultivar-group), predic... 232 9e-58
6gb|BT017004.1| Zea mays clone EK07D2310A08.c mRNA sequence 141 2e-30
7gb|BT017777.1| Zea mays clone EL01N0503B10.c mRNA sequence 141 2e-30
8gb|AY109645.1| Zea mays CL4356_2 mRNA sequence 135 2e-28
9gb|AC129718.2| Oryza sativa (japonica cultivar-group) chromosome... 78 3e-11
10gb|AY459341.1| Oryza sativa (japonica cultivar-group) clone CL03... 78 3e-11
11dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
12dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 70 7e-09
13dbj|AP003260.5| Oryza sativa (japonica cultivar-group) genomic D... 70 7e-09
14dbj|AP003247.4| Oryza sativa (japonica cultivar-group) genomic D... 70 7e-09
15gb|BT013996.1| Lycopersicon esculentum clone 133043F, mRNA sequence 52 0.002
16dbj|AB210519.1| Ciona intestinalis mRNA for Janus kinase, comple... 44 0.43
17gb|AC154801.2| Mus musculus BAC clone RP24-500P8 from chromosome... 44 0.43
18gb|AC160643.2| Gallus gallus BAC clone CH261-123L21 from chromos... 44 0.43
19gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome 44 0.43
20gb|AC136969.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.7
21dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
22dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
23dbj|AK104583.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.7
24dbj|AK101778.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.7
25dbj|AK060359.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.7
26dbj|AK059980.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.7
27gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.7
28gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.7
29emb|BX000505.1|CNS08CDV Oryza sativa chromosome 12, . BAC OJ1126... 42 1.7
30gb|AC154374.1| Mus musculus BAC clone RP23-81F24 from 9, complet... 42 1.7
31gb|AC102303.10| Mus musculus chromosome 1, clone RP24-403I11, co... 40 6.6
32gb|AC157933.4| Mus musculus chromosome 5, clone RP24-189N4, comp... 40 6.6
33gb|AY619371.1| Daphnia pulicaria clone WFms0000362 microsatellit... 40 6.6
34ref|XM_753392.1| Ustilago maydis 521 hypothetical protein (UM023... 40 6.6
35gb|AC117213.3| Mus musculus BAC clone RP23-305J6 from 6, complet... 40 6.6
36gb|BC041518.1| Xenopus laevis proteasome (prosome, macropain) su... 40 6.6
37gb|AC098727.3| Mus musculus BAC clone RP23-3H16 from 4, complete... 40 6.6
38emb|AL663103.4| Mouse DNA sequence from clone RP23-267D13 on chr... 40 6.6
39emb|AJ719536.1| Gallus gallus mRNA for hypothetical protein, clo... 40 6.6
40gb|AC079460.19| Homo sapiens 12 BAC RP11-297L6 (Roswell Park Can... 40 6.6
41gb|AC113429.2| Homo sapiens chromosome 5 clone RP11-775H7, compl... 40 6.6
42gb|AC157786.7| Mus musculus chromosome 1, clone RP23-280O23, com... 40 6.6
43dbj|AK084370.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN ... 40 6.6
44gb|AC007248.4| Homo sapiens BAC clone RP11-315O22 from 2, comple... 40 6.6
45gb|AE014133.1| Streptococcus mutans UA159, complete genome 40 6.6
46emb|AL691475.18| Mouse DNA sequence from clone RP23-264P11 on ch... 40 6.6
47gb|M98497.1|CHKRHOPR Chicken rhodopsin gene, promoter region 40 6.6 
>ref|NM_191042.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 750

 Score =  254 bits (128), Expect = 2e-64
 Identities = 257/300 (85%), Gaps = 1/300 (0%)
 Strand = Plus / Minus

                                                                       
Query: 192 gcatccatctcttccaacgctgcctgtgctgctgccttggcctgctccagaagatcattn 251
           ||||||||||| || | ||||||||| |||||  ||||||||||||||| |||||||   
Sbjct: 743 gcatccatctcctcaagcgctgcctgagctgcaaccttggcctgctccaaaagatcagca 684

                                                                       
Query: 252 ggaaccttctcatgctgacggttagattcatcgcacacccagcttagttccagctcaaaa 311
           |||||||||| |||||| || || |||||||| || | |||||||| ||||| |||||||
Sbjct: 683 ggaaccttctgatgctggcgatttgattcatcacatatccagcttaattccaactcaaaa 624

                                                                       
Query: 312 gatttgtcttttgcttcatcgngtataccataaattatcttggcaacctcaacaatgcct 371
           | |||||| || ||||||||  |||  |||||||| ||||| |||||||| |||||||||
Sbjct: 623 gctttgtccttagcttcatcatgtactccataaatgatctttgcaacctccacaatgcct 564

                                                                       
Query: 372 tccctgcaggttagctcagaaagcttcaatntctctatctccgtttttgcagcgctgtct 431
           |||| |||||| ||||| |||||||||||  ||||||| || ||||||||||| ||||||
Sbjct: 563 tcccggcaggtaagctcggaaagcttcaacttctctatttcagtttttgcagc-ctgtct 505

                                                                       
Query: 432 tcctttacccagagcagnaccaaaatatttatatgagagccctgaaggttcgatcatgta 491
           ||||||||||||||||| |||||| ||||| |||||||  ||||| ||||||||||||||
Sbjct: 504 tcctttacccagagcagcaccaaagtatttgtatgagactcctgagggttcgatcatgta 445
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>dbj|AK103541.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132C12, full
           insert sequence
          Length = 1188

 Score =  254 bits (128), Expect = 2e-64
 Identities = 257/300 (85%), Gaps = 1/300 (0%)
 Strand = Plus / Minus

                                                                       
Query: 192 gcatccatctcttccaacgctgcctgtgctgctgccttggcctgctccagaagatcattn 251
           ||||||||||| || | ||||||||| |||||  ||||||||||||||| |||||||   
Sbjct: 997 gcatccatctcctcaagcgctgcctgagctgcaaccttggcctgctccaaaagatcagca 938

                                                                       
Query: 252 ggaaccttctcatgctgacggttagattcatcgcacacccagcttagttccagctcaaaa 311
           |||||||||| |||||| || || |||||||| || | |||||||| ||||| |||||||
Sbjct: 937 ggaaccttctgatgctggcgatttgattcatcacatatccagcttaattccaactcaaaa 878

                                                                       
Query: 312 gatttgtcttttgcttcatcgngtataccataaattatcttggcaacctcaacaatgcct 371
           | |||||| || ||||||||  |||  |||||||| ||||| |||||||| |||||||||
Sbjct: 877 gctttgtccttagcttcatcatgtactccataaatgatctttgcaacctccacaatgcct 818

                                                                       
Query: 372 tccctgcaggttagctcagaaagcttcaatntctctatctccgtttttgcagcgctgtct 431
           |||| |||||| ||||| |||||||||||  ||||||| || ||||||||||| ||||||
Sbjct: 817 tcccggcaggtaagctcggaaagcttcaacttctctatttcagtttttgcagc-ctgtct 759

                                                                       
Query: 432 tcctttacccagagcagnaccaaaatatttatatgagagccctgaaggttcgatcatgta 491
           ||||||||||||||||| |||||| ||||| |||||||  ||||| ||||||||||||||
Sbjct: 758 tcctttacccagagcagcaccaaagtatttgtatgagactcctgagggttcgatcatgta 699
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>dbj|AB026562.1| Oryza sativa (japonica cultivar-group) OsPAG1 mRNA for alpha 7
           subunit of 20S proteasome, complete cds
          Length = 1091

 Score =  254 bits (128), Expect = 2e-64
 Identities = 257/300 (85%), Gaps = 1/300 (0%)
 Strand = Plus / Minus

                                                                       
Query: 192 gcatccatctcttccaacgctgcctgtgctgctgccttggcctgctccagaagatcattn 251
           ||||||||||| || | ||||||||| |||||  ||||||||||||||| |||||||   
Sbjct: 893 gcatccatctcctcaagcgctgcctgagctgcaaccttggcctgctccaaaagatcagca 834

                                                                       
Query: 252 ggaaccttctcatgctgacggttagattcatcgcacacccagcttagttccagctcaaaa 311
           |||||||||| |||||| || || |||||||| || | |||||||| ||||| |||||||
Sbjct: 833 ggaaccttctgatgctggcgatttgattcatcacatatccagcttaattccaactcaaaa 774

                                                                       
Query: 312 gatttgtcttttgcttcatcgngtataccataaattatcttggcaacctcaacaatgcct 371
           | |||||| || ||||||||  |||  |||||||| ||||| |||||||| |||||||||
Sbjct: 773 gctttgtccttagcttcatcatgtactccataaatgatctttgcaacctccacaatgcct 714

                                                                       
Query: 372 tccctgcaggttagctcagaaagcttcaatntctctatctccgtttttgcagcgctgtct 431
           |||| |||||| ||||| |||||||||||  ||||||| || ||||||||||| ||||||
Sbjct: 713 tcccggcaggtaagctcggaaagcttcaacttctctatttcagtttttgcagc-ctgtct 655

                                                                       
Query: 432 tcctttacccagagcagnaccaaaatatttatatgagagccctgaaggttcgatcatgta 491
           ||||||||||||||||| |||||| ||||| |||||||  ||||| ||||||||||||||
Sbjct: 654 tcctttacccagagcagcaccaaagtatttgtatgagactcctgagggttcgatcatgta 595
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>dbj|AK061784.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-E06, full
           insert sequence
          Length = 1120

 Score =  248 bits (125), Expect = 1e-62
 Identities = 254/297 (85%), Gaps = 1/297 (0%)
 Strand = Plus / Minus

                                                                       
Query: 192 gcatccatctcttccaacgctgcctgtgctgctgccttggcctgctccagaagatcattn 251
           ||||||||||| || | ||||||||| |||||  ||||||||||||||| |||||||   
Sbjct: 929 gcatccatctcctcaagcgctgcctgagctgcaaccttggcctgctccaaaagatcagca 870

                                                                       
Query: 252 ggaaccttctcatgctgacggttagattcatcgcacacccagcttagttccagctcaaaa 311
           |||||||||| |||||| || || |||||||| || | |||||||| ||||| |||||||
Sbjct: 869 ggaaccttctgatgctggcgatttgattcatcacatatccagcttaattccaactcaaaa 810

                                                                       
Query: 312 gatttgtcttttgcttcatcgngtataccataaattatcttggcaacctcaacaatgcct 371
           | |||||| || ||||||||  |||  |||||||| ||||| |||||||| |||||||||
Sbjct: 809 gctttgtccttagcttcatcatgtactccataaatgatctttgcaacctccacaatgcct 750

                                                                       
Query: 372 tccctgcaggttagctcagaaagcttcaatntctctatctccgtttttgcagcgctgtct 431
           |||| |||||| ||||| |||||||||||  ||||||| || ||||||||||| ||||||
Sbjct: 749 tcccggcaggtaagctcggaaagcttcaacttctctatttcagtttttgcagc-ctgtct 691

                                                                    
Query: 432 tcctttacccagagcagnaccaaaatatttatatgagagccctgaaggttcgatcat 488
           ||||||||||||||||| |||||| ||||| |||||||  ||||| |||||||||||
Sbjct: 690 tcctttacccagagcagcaccaaagtatttgtatgagactcctgagggttcgatcat 634
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>ref|XM_475461.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 750

 Score =  232 bits (117), Expect = 9e-58
 Identities = 252/297 (84%), Gaps = 1/297 (0%)
 Strand = Plus / Minus

                                                                       
Query: 195 tccatctcttccaacgctgcctgtgctgctgccttggcctgctccagaagatcattngga 254
           |||||||| || | ||||||||| || |||||||| ||||||||||  || || |  |||
Sbjct: 740 tccatctcctcgagcgctgcctgggcggctgccttcgcctgctccacgaggtcgtctgga 681

                                                                       
Query: 255 accttctcatgctgacggttagattcatcgcacacccagcttagttccagctcaaaagat 314
           |||||||||||||| || || ||||||||||| |||||||| || ||||| |||||   |
Sbjct: 680 accttctcatgctggcgctttgattcatcgcatacccagctcagctccagttcaaagtct 621

                                                                       
Query: 315 ttgtcttttgcttcatcgngtataccataaattatcttggcaacctcaacaatgccttcc 374
           |||||||| ||||| ||  | |  ||||| |||||||| |||||||||||||||||||| 
Sbjct: 620 ttgtctttagcttcgtcatgcactccatagattatctttgcaacctcaacaatgccttct 561

                                                                       
Query: 375 ctgcaggttagctcagaaagcttcaatntctctatctccgtttttgcagcgctgtcttcc 434
           ||||| || ||||||||||| |||| | |||||||||||||||||||||| |||||||||
Sbjct: 560 ctgcatgtaagctcagaaagattcagtttctctatctccgtttttgcagc-ctgtcttcc 502

                                                                    
Query: 435 tttacccagagcagnaccaaaatatttatatgagagccctgaaggttcgatcatgta 491
           ||| ||||| |||| ||| || |||||||| |||||||| |||||||||||||||||
Sbjct: 501 tttccccagggcagcaccgaagtatttataggagagccccgaaggttcgatcatgta 445
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>gb|BT017004.1| Zea mays clone EK07D2310A08.c mRNA sequence
          Length = 1256

 Score =  141 bits (71), Expect = 2e-30
 Identities = 190/231 (82%)
 Strand = Plus / Minus

                                                                        
Query: 182  ttcttagncggcatccatctcttccaacgctgcctgtgctgctgccttggcctgctccag 241
            ||||||| | ||||||||||| || |  |||||||| || || || ||||||||||||| 
Sbjct: 1003 ttcttagtcagcatccatctcctcaagagctgcctgagcagcagctttggcctgctccaa 944

                                                                        
Query: 242  aagatcattnggaaccttctcatgctgacggttagattcatcgcacacccagcttagttc 301
             || ||||| |||||||||| |||||||||||| |||||||| || | |||||| |  ||
Sbjct: 943  cagttcatttggaaccttctgatgctgacggttcgattcatcacagatccagctcaactc 884

                                                                        
Query: 302  cagctcaaaagatttgtcttttgcttcatcgngtataccataaattatcttggcaacctc 361
            || |||||||| |||||| || ||||| ||  | |  |||||||||||||| ||||| ||
Sbjct: 883  caactcaaaagctttgtccttcgcttcgtcatgcactccataaattatctttgcaacttc 824

                                                               
Query: 362  aacaatgccttccctgcaggttagctcagaaagcttcaatntctctatctc 412
            |||||||||||||| |||||| ||||| ||||| |||||  | ||||||||
Sbjct: 823  aacaatgccttcccggcaggtaagctccgaaagtttcaacttttctatctc 773
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>gb|BT017777.1| Zea mays clone EL01N0503B10.c mRNA sequence
          Length = 1266

 Score =  141 bits (71), Expect = 2e-30
 Identities = 199/243 (81%)
 Strand = Plus / Minus

                                                                       
Query: 182 ttcttagncggcatccatctcttccaacgctgcctgtgctgctgccttggcctgctccag 241
           ||||||| | ||||||||||| || |  |||||||| || || || ||||||||||||| 
Sbjct: 939 ttcttagtcagcatccatctcctcaagagctgcctgagcagcagctttggcctgctccaa 880

                                                                       
Query: 242 aagatcattnggaaccttctcatgctgacggttagattcatcgcacacccagcttagttc 301
            || ||||| ||| |||||| |||||||||||| |||||||| || | |||||| |  ||
Sbjct: 879 cagttcatttggacccttctgatgctgacggttcgattcatcacagatccagctcaactc 820

                                                                       
Query: 302 cagctcaaaagatttgtcttttgcttcatcgngtataccataaattatcttggcaacctc 361
           || |||||||| |||||| || ||||| ||  | |  |||||||||||||| ||||| ||
Sbjct: 819 caactcaaaagctttgtccttcgcttcgtcatgcactccataaattatctttgcaacttc 760

                                                                       
Query: 362 aacaatgccttccctgcaggttagctcagaaagcttcaatntctctatctccgtttttgc 421
           |||||||||||||| |||||| ||||| ||||| |||||  | |||||||| || |||||
Sbjct: 759 aacaatgccttcccggcaggtaagctccgaaagtttcaacttttctatctcagtctttgc 700

              
Query: 422 agc 424
           |||
Sbjct: 699 agc 697
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>gb|AY109645.1| Zea mays CL4356_2 mRNA sequence
          Length = 1252

 Score =  135 bits (68), Expect = 2e-28
 Identities = 229/283 (80%), Gaps = 1/283 (0%)
 Strand = Plus / Plus

                                                                       
Query: 182 ttcttagncggcatccatctcttccaacgctgcctgtgctgctgccttggcctgctccag 241
           ||||||| | ||||||||||| || |  |||||||| || || || ||||||||||||| 
Sbjct: 284 ttcttagtcagcatccatctcctcaagagctgcctgagcagcagctttggcctgctccaa 343

                                                                       
Query: 242 aagatcattnggaaccttctcatgctgacggttagattcatcgcacacccagcttagttc 301
            || ||||| |||||||||| |||||| ||||| |||||||| || | |||||| |  ||
Sbjct: 344 cagttcatttggaaccttctgatgctggcggttcgattcatcacagatccagctcaactc 403

                                                                       
Query: 302 cagctcaaaagatttgtcttttgcttcatcgngtataccataaattatcttggcaacctc 361
           || |||||||| |||||| || ||||| ||  | |  |||||||||||||| ||||| ||
Sbjct: 404 caactcaaaagctttgtccttcgcttcgtcatgcactccataaattatctttgcaacttc 463

                                                                       
Query: 362 aacaatgccttccctgcaggttagctcagaaagcttcaatntctctatctccgtttttgc 421
           |||||||||||| | |||||| ||||| ||||| |||||  | |||||||| || |||||
Sbjct: 464 aacaatgccttctcggcaggtaagctccgaaagtttcaacttttctatctcagtctttgc 523

                                                      
Query: 422 agcgctgtcttcctttacccagagcagnaccaaaatatttata 464
           ||| ||| ||||| || ||||  |||| ||| || ||||||||
Sbjct: 524 agc-ctgccttcccttccccaatgcagcaccgaagtatttata 565
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>gb|AC129718.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0088I06, complete sequence
          Length = 187651

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 59/66 (89%)
 Strand = Plus / Plus

                                                                         
Query: 348   atcttggcaacctcaacaatgccttccctgcaggttagctcagaaagcttcaatntctct 407
             ||||| |||||||||||||||||||| ||||| || ||||||||||| |||| | |||||
Sbjct: 46785 atctttgcaacctcaacaatgccttctctgcatgtaagctcagaaagattcagtttctct 46844

                   
Query: 408   atctcc 413
             ||||||
Sbjct: 46845 atctcc 46850



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 63/74 (85%)
 Strand = Plus / Plus

                                                                         
Query: 255   accttctcatgctgacggttagattcatcgcacacccagcttagttccagctcaaaagat 314
             |||||||||||||| || || ||||||||||| |||||||| || ||||| |||||   |
Sbjct: 46196 accttctcatgctggcgctttgattcatcgcatacccagctcagctccagttcaaagtct 46255

                           
Query: 315   ttgtcttttgcttc 328
             |||||||| |||||
Sbjct: 46256 ttgtctttagcttc 46269



 Score = 44.1 bits (22), Expect = 0.43
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 466   gagagccctgaaggttcgatcatgta 491
             |||||||| |||||||||||||||||
Sbjct: 47901 gagagccccgaaggttcgatcatgta 47926



 Score = 44.1 bits (22), Expect = 0.43
 Identities = 43/49 (87%), Gaps = 1/49 (2%)
 Strand = Plus / Plus

                                                              
Query: 413   cgtttttgcagcgctgtcttcctttacccagagcagnaccaaaatattt 461
             |||||||||||| |||||||||||| ||||| |||| ||| || |||||
Sbjct: 47618 cgtttttgcagc-ctgtcttcctttccccagggcagcaccgaagtattt 47665
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>gb|AY459341.1| Oryza sativa (japonica cultivar-group) clone CL031105.6 R2R3-MYB gene
             region
          Length = 58956

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 59/66 (89%)
 Strand = Plus / Minus

                                                                         
Query: 348   atcttggcaacctcaacaatgccttccctgcaggttagctcagaaagcttcaatntctct 407
             ||||| |||||||||||||||||||| ||||| || ||||||||||| |||| | |||||
Sbjct: 34111 atctttgcaacctcaacaatgccttctctgcatgtaagctcagaaagattcagtttctct 34052

                   
Query: 408   atctcc 413
             ||||||
Sbjct: 34051 atctcc 34046



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                         
Query: 255   accttctcatgctgacggttagattcatcgcacacccagcttagttccagctcaaaagat 314
             |||||||||||||| || || ||||||||||| |||||||| || ||||| |||||   |
Sbjct: 34700 accttctcatgctggcgctttgattcatcgcatacccagctcagctccagttcaaagtct 34641

                           
Query: 315   ttgtcttttgcttc 328
             |||||||| |||||
Sbjct: 34640 ttgtctttagcttc 34627



 Score = 44.1 bits (22), Expect = 0.43
 Identities = 43/49 (87%), Gaps = 1/49 (2%)
 Strand = Plus / Minus

                                                              
Query: 413   cgtttttgcagcgctgtcttcctttacccagagcagnaccaaaatattt 461
             |||||||||||| |||||||||||| ||||| |||| ||| || |||||
Sbjct: 33278 cgtttttgcagc-ctgtcttcctttccccagggcagcaccgaagtattt 33231



 Score = 44.1 bits (22), Expect = 0.43
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 466   gagagccctgaaggttcgatcatgta 491
             |||||||| |||||||||||||||||
Sbjct: 32993 gagagccccgaaggttcgatcatgta 32968
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 59/66 (89%)
 Strand = Plus / Plus

                                                                            
Query: 348      atcttggcaacctcaacaatgccttccctgcaggttagctcagaaagcttcaatntctct 407
                ||||| |||||||||||||||||||| ||||| || ||||||||||| |||| | |||||
Sbjct: 23978296 atctttgcaacctcaacaatgccttctctgcatgtaagctcagaaagattcagtttctct 23978355

                      
Query: 408      atctcc 413
                ||||||
Sbjct: 23978356 atctcc 23978361



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 63/74 (85%)
 Strand = Plus / Plus

                                                                            
Query: 255      accttctcatgctgacggttagattcatcgcacacccagcttagttccagctcaaaagat 314
                |||||||||||||| || || ||||||||||| |||||||| || ||||| |||||   |
Sbjct: 23977707 accttctcatgctggcgctttgattcatcgcatacccagctcagctccagttcaaagtct 23977766

                              
Query: 315      ttgtcttttgcttc 328
                |||||||| |||||
Sbjct: 23977767 ttgtctttagcttc 23977780



 Score = 44.1 bits (22), Expect = 0.43
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 466      gagagccctgaaggttcgatcatgta 491
                |||||||| |||||||||||||||||
Sbjct: 23979412 gagagccccgaaggttcgatcatgta 23979437



 Score = 44.1 bits (22), Expect = 0.43
 Identities = 43/49 (87%), Gaps = 1/49 (2%)
 Strand = Plus / Plus

                                                                 
Query: 413      cgtttttgcagcgctgtcttcctttacccagagcagnaccaaaatattt 461
                |||||||||||| |||||||||||| ||||| |||| ||| || |||||
Sbjct: 23979129 cgtttttgcagc-ctgtcttcctttccccagggcagcaccgaagtattt 23979176
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                            
Query: 348      atcttggcaacctcaacaatgccttccctgcaggttagctcagaaagcttcaatntctct 407
                ||||| |||||||| ||||||||||||| |||||| ||||| |||||||||||  |||||
Sbjct: 34467113 atctttgcaacctccacaatgccttcccggcaggtaagctcggaaagcttcaacttctct 34467054

                  
Query: 408      at 409
                ||
Sbjct: 34467053 at 34467052



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 46/49 (93%), Gaps = 1/49 (2%)
 Strand = Plus / Minus

                                                                 
Query: 413      cgtttttgcagcgctgtcttcctttacccagagcagnaccaaaatattt 461
                |||||||||||| ||||||||||||||||||||||| |||||| |||||
Sbjct: 34466262 cgtttttgcagc-ctgtcttcctttacccagagcagcaccaaagtattt 34466215



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                         
Query: 192      gcatccatctcttccaacgctgcctgtgctgctgccttggcctgctccagaagatca 248
                ||||||||||| || | ||||||||| |||||  ||||||||||||||| |||||||
Sbjct: 34468541 gcatccatctcctcaagcgctgcctgagctgcaaccttggcctgctccaaaagatca 34468485
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>dbj|AP003260.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0468B07
          Length = 169071

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                          
Query: 348    atcttggcaacctcaacaatgccttccctgcaggttagctcagaaagcttcaatntctct 407
              ||||| |||||||| ||||||||||||| |||||| ||||| |||||||||||  |||||
Sbjct: 149457 atctttgcaacctccacaatgccttcccggcaggtaagctcggaaagcttcaacttctct 149398

                
Query: 408    at 409
              ||
Sbjct: 149397 at 149396



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 46/49 (93%), Gaps = 1/49 (2%)
 Strand = Plus / Minus

                                                               
Query: 413    cgtttttgcagcgctgtcttcctttacccagagcagnaccaaaatattt 461
              |||||||||||| ||||||||||||||||||||||| |||||| |||||
Sbjct: 148606 cgtttttgcagc-ctgtcttcctttacccagagcagcaccaaagtattt 148559



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                       
Query: 192    gcatccatctcttccaacgctgcctgtgctgctgccttggcctgctccagaagatca 248
              ||||||||||| || | ||||||||| |||||  ||||||||||||||| |||||||
Sbjct: 150885 gcatccatctcctcaagcgctgcctgagctgcaaccttggcctgctccaaaagatca 150829
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>dbj|AP003247.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0425G02
          Length = 155432

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                         
Query: 348   atcttggcaacctcaacaatgccttccctgcaggttagctcagaaagcttcaatntctct 407
             ||||| |||||||| ||||||||||||| |||||| ||||| |||||||||||  |||||
Sbjct: 42832 atctttgcaacctccacaatgccttcccggcaggtaagctcggaaagcttcaacttctct 42773

               
Query: 408   at 409
             ||
Sbjct: 42772 at 42771



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 46/49 (93%), Gaps = 1/49 (2%)
 Strand = Plus / Minus

                                                              
Query: 413   cgtttttgcagcgctgtcttcctttacccagagcagnaccaaaatattt 461
             |||||||||||| ||||||||||||||||||||||| |||||| |||||
Sbjct: 41981 cgtttttgcagc-ctgtcttcctttacccagagcagcaccaaagtattt 41934



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                      
Query: 192   gcatccatctcttccaacgctgcctgtgctgctgccttggcctgctccagaagatca 248
             ||||||||||| || | ||||||||| |||||  ||||||||||||||| |||||||
Sbjct: 44260 gcatccatctcctcaagcgctgcctgagctgcaaccttggcctgctccaaaagatca 44204
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>gb|BT013996.1| Lycopersicon esculentum clone 133043F, mRNA sequence
          Length = 1134

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 97/121 (80%)
 Strand = Plus / Minus

                                                                       
Query: 252 ggaaccttctcatgctgacggttagattcatcgcacacccagcttagttccagctcaaaa 311
           |||||||||| ||| || |||||||| ||||| || |||||||| | ||| || ||||| 
Sbjct: 787 ggaaccttctgatgttggcggttagactcatcacatacccagctcatttcaagttcaaat 728

                                                                       
Query: 312 gatttgtcttttgcttcatcgngtataccataaattatcttggcaacctcaacaatgcct 371
           |  ||||||||||| |||||  |||  || |||||||| || || ||||||| ||| |||
Sbjct: 727 gccttgtcttttgcctcatcatgtactccgtaaattatttttgctacctcaataatccct 668

            
Query: 372 t 372
           |
Sbjct: 667 t 667
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>dbj|AB210519.1| Ciona intestinalis mRNA for Janus kinase, complete cds, clone:
            cigd046k12
          Length = 4399

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 306  tcaaaagatttgtcttttgctt 327
            ||||||||||||||||||||||
Sbjct: 1565 tcaaaagatttgtcttttgctt 1544
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>gb|AC154801.2| Mus musculus BAC clone RP24-500P8 from chromosome 16, complete sequence
          Length = 157077

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 450   accaaaatatttatatgagagccctg 475
             ||||||||||| ||||||||||||||
Sbjct: 58767 accaaaatattcatatgagagccctg 58792
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>gb|AC160643.2| Gallus gallus BAC clone CH261-123L21 from chromosome unknown, complete
              sequence
          Length = 267345

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 157    aatgggaagcagagctcatcatctct 182
              ||||||||||||||||| ||||||||
Sbjct: 223793 aatgggaagcagagctcttcatctct 223768
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>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome
          Length = 3184243

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 220     ctgctgccttggcctgctccag 241
               ||||||||||||||||||||||
Sbjct: 1904782 ctgctgccttggcctgctccag 1904761
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>gb|AC136969.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0048P17, complete sequence
          Length = 149883

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 208   acgctgcctgtgctgctgcct 228
             |||||||||||||||||||||
Sbjct: 53850 acgctgcctgtgctgctgcct 53830
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
              complete sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 208    acgctgcctgtgctgctgcct 228
              |||||||||||||||||||||
Sbjct: 944343 acgctgcctgtgctgctgcct 944323
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
              complete sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 208    acgctgcctgtgctgctgcct 228
              |||||||||||||||||||||
Sbjct: 886974 acgctgcctgtgctgctgcct 886954
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>dbj|AK104583.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-F04, full
           insert sequence
          Length = 1091

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 208 acgctgcctgtgctgctgcct 228
           |||||||||||||||||||||
Sbjct: 201 acgctgcctgtgctgctgcct 221
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>dbj|AK101778.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033064O15, full
           insert sequence
          Length = 1201

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 208 acgctgcctgtgctgctgcct 228
           |||||||||||||||||||||
Sbjct: 301 acgctgcctgtgctgctgcct 321
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>dbj|AK060359.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-H05, full
           insert sequence
          Length = 1334

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 208 acgctgcctgtgctgctgcct 228
           |||||||||||||||||||||
Sbjct: 298 acgctgcctgtgctgctgcct 318
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>dbj|AK059980.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-E05, full
           insert sequence
          Length = 1106

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 208 acgctgcctgtgctgctgcct 228
           |||||||||||||||||||||
Sbjct: 204 acgctgcctgtgctgctgcct 224
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 208    acgctgcctgtgctgctgcct 228
              |||||||||||||||||||||
Sbjct: 886280 acgctgcctgtgctgctgcct 886260
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 208    acgctgcctgtgctgctgcct 228
              |||||||||||||||||||||
Sbjct: 944343 acgctgcctgtgctgctgcct 944323
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>emb|BX000505.1|CNS08CDV Oryza sativa chromosome 12, . BAC OJ1126_F08 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 134217

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 208   acgctgcctgtgctgctgcct 228
             |||||||||||||||||||||
Sbjct: 81928 acgctgcctgtgctgctgcct 81908
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>gb|AC154374.1| Mus musculus BAC clone RP23-81F24 from 9, complete sequence
          Length = 169272

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 225   gccttggcctgctccagaagatcat 249
             ||||||||||| |||||||||||||
Sbjct: 71028 gccttggcctgatccagaagatcat 71004
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>gb|AC102303.10| Mus musculus chromosome 1, clone RP24-403I11, complete sequence
          Length = 162813

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 146   acatggaagtaaatgggaag 165
             ||||||||||||||||||||
Sbjct: 21522 acatggaagtaaatgggaag 21541
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>gb|AC157933.4| Mus musculus chromosome 5, clone RP24-189N4, complete sequence
          Length = 185286

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 130    gtatctgttacgccacacat 149
              ||||||||||||||||||||
Sbjct: 106298 gtatctgttacgccacacat 106279
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>gb|AY619371.1| Daphnia pulicaria clone WFms0000362 microsatellite marker Dp349
           sequence
          Length = 226

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 207 aacgctgcctgtgctgctgc 226
           ||||||||||||||||||||
Sbjct: 163 aacgctgcctgtgctgctgc 182
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>ref|XM_753392.1| Ustilago maydis 521 hypothetical protein (UM02338.1) partial mRNA
          Length = 927

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 214 cctgtgctgctgccttggcc 233
           ||||||||||||||||||||
Sbjct: 250 cctgtgctgctgccttggcc 231
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>gb|AC117213.3| Mus musculus BAC clone RP23-305J6 from 6, complete sequence
          Length = 186160

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 352   tggcaacctcaacaatgcct 371
             ||||||||||||||||||||
Sbjct: 74826 tggcaacctcaacaatgcct 74807
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>gb|BC041518.1| Xenopus laevis proteasome (prosome, macropain) subunit, alpha type,
           3, mRNA (cDNA clone MGC:53724 IMAGE:4930219), complete
           cds
          Length = 974

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 288 acccagcttagttccagctcaaaagatttgtcttttgcttcatc 331
           ||||||||||||||||| ||||| || || |||||  |||||||
Sbjct: 714 acccagcttagttccagttcaaatgacttatctttcacttcatc 671
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>gb|AC098727.3| Mus musculus BAC clone RP23-3H16 from 4, complete sequence
          Length = 231302

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 158   atgggaagcagagctcatcatctc 181
             |||||||||||| |||||||||||
Sbjct: 66891 atgggaagcagacctcatcatctc 66868
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>emb|AL663103.4| Mouse DNA sequence from clone RP23-267D13 on chromosome 11, complete
              sequence
          Length = 238478

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 426    ctgtcttcctttacccagag 445
              ||||||||||||||||||||
Sbjct: 231576 ctgtcttcctttacccagag 231595
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>emb|AJ719536.1| Gallus gallus mRNA for hypothetical protein, clone 3c18
          Length = 1688

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 217  gtgctgctgccttggcctgctcca 240
            ||||||||||||||||| ||||||
Sbjct: 1075 gtgctgctgccttggccagctcca 1098
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>gb|AC079460.19| Homo sapiens 12 BAC RP11-297L6 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 175994

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 361    caacaatgccttccctgcag 380
              ||||||||||||||||||||
Sbjct: 147594 caacaatgccttccctgcag 147613
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>gb|AC113429.2| Homo sapiens chromosome 5 clone RP11-775H7, complete sequence
          Length = 10528

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 152  aagtaaatgggaagcagagc 171
            ||||||||||||||||||||
Sbjct: 3908 aagtaaatgggaagcagagc 3927
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>gb|AC157786.7| Mus musculus chromosome 1, clone RP23-280O23, complete sequence
          Length = 205264

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 146    acatggaagtaaatgggaag 165
              ||||||||||||||||||||
Sbjct: 101589 acatggaagtaaatgggaag 101570
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>dbj|AK084370.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length enriched
            library, clone:D230033F14 product:unclassifiable, full
            insert sequence
          Length = 3251

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 352  tggcaacctcaacaatgcct 371
            ||||||||||||||||||||
Sbjct: 2798 tggcaacctcaacaatgcct 2779
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>gb|AC007248.4| Homo sapiens BAC clone RP11-315O22 from 2, complete sequence
          Length = 201535

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 145    cacatggaagtaaatgggaa 164
              ||||||||||||||||||||
Sbjct: 189740 cacatggaagtaaatgggaa 189759
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>gb|AE014133.1| Streptococcus mutans UA159, complete genome
          Length = 2030921

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 218     tgctgctgccttggcctgct 237
               ||||||||||||||||||||
Sbjct: 1594436 tgctgctgccttggcctgct 1594455
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>emb|AL691475.18| Mouse DNA sequence from clone RP23-264P11 on chromosome 4 Contains part
              of the Astn2 gene for astrotactin 2 and a CpG island,
              complete sequence
          Length = 174567

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 158    atgggaagcagagctcatcatctc 181
              |||||||||||| |||||||||||
Sbjct: 105513 atgggaagcagacctcatcatctc 105490
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>gb|M98497.1|CHKRHOPR Chicken rhodopsin gene, promoter region
          Length = 1925

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 371 ttccctgcaggttagctcag 390
           ||||||||||||||||||||
Sbjct: 268 ttccctgcaggttagctcag 249


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,151,715
Number of Sequences: 3902068
Number of extensions: 4151715
Number of successful extensions: 71959
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71678
Number of HSP's gapped (non-prelim): 272
length of query: 491
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 469
effective length of database: 17,147,199,772
effective search space: 8042036693068
effective search space used: 8042036693068
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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