ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd19g16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_472223.1| Oryza sativa (japonica cultivar-group), predic... 111 3e-21
2emb|AL731623.3|OSJN00263 Oryza sativa genomic DNA, chromosome 4,... 111 3e-21
3emb|AL607000.3|OSJN00132 Oryza sativa genomic DNA, chromosome 4,... 111 3e-21
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 111 3e-21
5dbj|AK101106.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 3e-21
6gb|AY109757.1| Zea mays CL36905_1 mRNA sequence 68 4e-08
7ref|XM_465875.1| Oryza sativa (japonica cultivar-group), mRNA 60 1e-05
8dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 60 1e-05
9dbj|AP005285.2| Oryza sativa (japonica cultivar-group) genomic D... 60 1e-05
10gb|AC003953.1| Homo sapiens chromosome 9, P1 clone 8660 (LBNL H1... 44 0.58
11emb|AL391475.7| Human DNA sequence from clone RP11-33G16 on chro... 44 0.58
12emb|AL354831.18| Human DNA sequence from clone RP11-188A23 on ch... 44 0.58
13gb|AC118646.23| Mus musculus chromosome 15, clone RP24-116A18, c... 42 2.3
14gb|BC050398.2| Homo sapiens PRP40 pre-mRNA processing factor 40 ... 42 2.3
15gb|BC031917.1| Homo sapiens PRP40 pre-mRNA processing factor 40 ... 42 2.3
16gb|BC067364.1| Homo sapiens PRP40 pre-mRNA processing factor 40 ... 42 2.3
17gb|BC082994.1| Mus musculus PRP40 pre-mRNA processing factor 40 ... 42 2.3
18gb|BC058389.1| Mus musculus PRP40 pre-mRNA processing factor 40 ... 42 2.3
19gb|BC051961.1| Mus musculus PRP40 pre-mRNA processing factor 40 ... 42 2.3
20ref|NM_001031698.1| Homo sapiens PRP40 pre-mRNA processing facto... 42 2.3
21ref|NM_012272.1| Homo sapiens PRP40 pre-mRNA processing factor 4... 42 2.3
22emb|AL157886.13| Human DNA sequence from clone RP11-59M22 on chr... 42 2.3
23emb|AL834216.1|HSM805637 Homo sapiens mRNA; cDNA DKFZp434O1520 (... 42 2.3
24ref|NM_018786.1| Mus musculus PRP40 pre-mRNA processing factor 4... 42 2.3
25dbj|AK140075.1| Mus musculus adult male corpora quadrigemina cDN... 42 2.3
26dbj|AK164947.1| Mus musculus 0 day neonate lung cDNA, RIKEN full... 42 2.3
27gb|AC020612.40| Homo sapiens 12 BAC RP11-133N21 (Roswell Park Ca... 42 2.3
28gb|AF135440.1|AF135440 Mus musculus huntington yeast partner C (... 42 2.3
29gb|AC161198.5| Mus musculus chromosome 15, clone RP23-34E23, com... 42 2.3
30gb|AC134555.4| Mus musculus BAC clone RP24-320K4 from 17, comple... 42 2.3
31gb|AY702979.1| Capsicum annuum clone YAC YCA22D8 genomic sequence 40 9.0
32gb|AC102597.22| Mus musculus chromosome 18, clone RP23-361H2, co... 40 9.0
33gb|AE017261.1| Picrophilus torridus DSM 9790, complete genome 40 9.0
34gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 9.0
35gb|AY465058.1| Cryptosporidium parvum chromosome 4 oocyst wall p... 40 9.0
36emb|CR318593.15| Zebrafish DNA sequence from clone CH211-160O17 ... 40 9.0
37gb|AC127563.4| Mus musculus BAC clone RP24-283E13 from chromosom... 40 9.0
38gb|AC079887.17| Oryza sativa (japonica cultivar-group) chromosom... 40 9.0
39ref|XM_662477.1| Cryptosporidium hominis TU502 oocyst wall prote... 40 9.0
40gb|AC148239.7| Medicago truncatula clone mth2-5d7, complete sequ... 40 9.0
41emb|AL357518.15| Human DNA sequence from clone RP11-679B17 on ch... 40 9.0
42emb|CR848759.4| Zebrafish DNA sequence from clone CH211-229D2 in... 40 9.0
43gb|AC159616.2| Mus musculus BAC clone RP24-497G20 from chromosom... 40 9.0
44gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genom... 40 9.0
45ref|XM_625656.1| Cryptosporidium parvum Iowa II cryptosporidium ... 40 9.0
46dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
47gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome 40 9.0
48gb|AC098485.6| Homo sapiens BAC clone CTD-2053I13 from 2, comple... 40 9.0
49gb|AF130354.1|AF130354 Pimephales promelas vitellogenin precurso... 40 9.0
50dbj|AK106620.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.0
51gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome 40 9.0
52dbj|AP001891.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 9.0
53emb|AL929530.9| Zebrafish DNA sequence from clone CH211-190H2, c... 40 9.0
54emb|CR974582.5| Mouse DNA sequence from clone RP23-84L8 on chrom... 40 9.0 
>ref|XM_472223.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 795

 Score =  111 bits (56), Expect = 3e-21
 Identities = 98/112 (87%)
 Strand = Plus / Minus

                                                                       
Query: 288 ggcgatagtttatcatccctcaccctgttgaagatacccgtatacttctcgcccgattcc 347
           ||||||| |||||||||||||||||||||||||||||| ||| | || ||||| ||| | 
Sbjct: 590 ggcgataatttatcatccctcaccctgttgaagataccagtaaatttttcgcctgatgct 531

                                                               
Query: 348 gcgttagcctcatcccactcaccaaatggtggaacagccacttcatcgtcag 399
           || ||| ||||||||||||||||||| ||||||||||| || ||||| ||||
Sbjct: 530 gcattaccctcatcccactcaccaaacggtggaacagctacatcatcttcag 479



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 66/78 (84%)
 Strand = Plus / Minus

                                                                       
Query: 440 aggagtgtgctggccctgtgcttcggacgacgccctcctctctggagtgtgcattccagc 499
           |||||| |||||||| ||| | || || || ||||||||||||||||| |||||||||| 
Sbjct: 435 aggagtatgctggccatgtccctccgatgaagccctcctctctggagtctgcattccaga 376

                             
Query: 500 tgtcctgttcctcggctt 517
           || ||||| | |||||||
Sbjct: 375 tgacctgtgcttcggctt 358
to top
>emb|AL731623.3|OSJN00263 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0083D01,
              complete sequence
          Length = 148353

 Score =  111 bits (56), Expect = 3e-21
 Identities = 98/112 (87%)
 Strand = Plus / Minus

                                                                          
Query: 288    ggcgatagtttatcatccctcaccctgttgaagatacccgtatacttctcgcccgattcc 347
              ||||||| |||||||||||||||||||||||||||||| ||| | || ||||| ||| | 
Sbjct: 141405 ggcgataatttatcatccctcaccctgttgaagataccagtaaatttttcgcctgatgct 141346

                                                                  
Query: 348    gcgttagcctcatcccactcaccaaatggtggaacagccacttcatcgtcag 399
              || ||| ||||||||||||||||||| ||||||||||| || ||||| ||||
Sbjct: 141345 gcattaccctcatcccactcaccaaacggtggaacagctacatcatcttcag 141294



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 66/78 (84%)
 Strand = Plus / Minus

                                                                          
Query: 440    aggagtgtgctggccctgtgcttcggacgacgccctcctctctggagtgtgcattccagc 499
              |||||| |||||||| ||| | || || || ||||||||||||||||| |||||||||| 
Sbjct: 141154 aggagtatgctggccatgtccctccgatgaagccctcctctctggagtctgcattccaga 141095

                                
Query: 500    tgtcctgttcctcggctt 517
              || ||||| | |||||||
Sbjct: 141094 tgacctgtgcttcggctt 141077
to top
>emb|AL607000.3|OSJN00132 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0089B03,
             complete sequence
          Length = 130910

 Score =  111 bits (56), Expect = 3e-21
 Identities = 98/112 (87%)
 Strand = Plus / Minus

                                                                         
Query: 288   ggcgatagtttatcatccctcaccctgttgaagatacccgtatacttctcgcccgattcc 347
             ||||||| |||||||||||||||||||||||||||||| ||| | || ||||| ||| | 
Sbjct: 28644 ggcgataatttatcatccctcaccctgttgaagataccagtaaatttttcgcctgatgct 28585

                                                                 
Query: 348   gcgttagcctcatcccactcaccaaatggtggaacagccacttcatcgtcag 399
             || ||| ||||||||||||||||||| ||||||||||| || ||||| ||||
Sbjct: 28584 gcattaccctcatcccactcaccaaacggtggaacagctacatcatcttcag 28533



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 66/78 (84%)
 Strand = Plus / Minus

                                                                         
Query: 440   aggagtgtgctggccctgtgcttcggacgacgccctcctctctggagtgtgcattccagc 499
             |||||| |||||||| ||| | || || || ||||||||||||||||| |||||||||| 
Sbjct: 28393 aggagtatgctggccatgtccctccgatgaagccctcctctctggagtctgcattccaga 28334

                               
Query: 500   tgtcctgttcctcggctt 517
             || ||||| | |||||||
Sbjct: 28333 tgacctgtgcttcggctt 28316
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  111 bits (56), Expect = 3e-21
 Identities = 98/112 (87%)
 Strand = Plus / Minus

                                                                            
Query: 288      ggcgatagtttatcatccctcaccctgttgaagatacccgtatacttctcgcccgattcc 347
                ||||||| |||||||||||||||||||||||||||||| ||| | || ||||| ||| | 
Sbjct: 18560778 ggcgataatttatcatccctcaccctgttgaagataccagtaaatttttcgcctgatgct 18560719

                                                                    
Query: 348      gcgttagcctcatcccactcaccaaatggtggaacagccacttcatcgtcag 399
                || ||| ||||||||||||||||||| ||||||||||| || ||||| ||||
Sbjct: 18560718 gcattaccctcatcccactcaccaaacggtggaacagctacatcatcttcag 18560667



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 66/78 (84%)
 Strand = Plus / Minus

                                                                            
Query: 440      aggagtgtgctggccctgtgcttcggacgacgccctcctctctggagtgtgcattccagc 499
                |||||| |||||||| ||| | || || || ||||||||||||||||| |||||||||| 
Sbjct: 18560527 aggagtatgctggccatgtccctccgatgaagccctcctctctggagtctgcattccaga 18560468

                                  
Query: 500      tgtcctgttcctcggctt 517
                || ||||| | |||||||
Sbjct: 18560467 tgacctgtgcttcggctt 18560450
to top
>dbj|AK101106.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033025D17, full
            insert sequence
          Length = 1847

 Score =  111 bits (56), Expect = 3e-21
 Identities = 98/112 (87%)
 Strand = Plus / Minus

                                                                        
Query: 288  ggcgatagtttatcatccctcaccctgttgaagatacccgtatacttctcgcccgattcc 347
            ||||||| |||||||||||||||||||||||||||||| ||| | || ||||| ||| | 
Sbjct: 1493 ggcgataatttatcatccctcaccctgttgaagataccagtaaatttttcgcctgatgct 1434

                                                                
Query: 348  gcgttagcctcatcccactcaccaaatggtggaacagccacttcatcgtcag 399
            || ||| ||||||||||||||||||| ||||||||||| || ||||| ||||
Sbjct: 1433 gcattaccctcatcccactcaccaaacggtggaacagctacatcatcttcag 1382



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 66/78 (84%)
 Strand = Plus / Minus

                                                                        
Query: 440  aggagtgtgctggccctgtgcttcggacgacgccctcctctctggagtgtgcattccagc 499
            |||||| |||||||| ||| | || || || ||||||||||||||||| |||||||||| 
Sbjct: 1338 aggagtatgctggccatgtccctccgatgaagccctcctctctggagtctgcattccaga 1279

                              
Query: 500  tgtcctgttcctcggctt 517
            || ||||| | |||||||
Sbjct: 1278 tgacctgtgcttcggctt 1261
to top
>gb|AY109757.1| Zea mays CL36905_1 mRNA sequence
          Length = 1031

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 79/94 (84%)
 Strand = Plus / Plus

                                                                       
Query: 298 tatcatccctcaccctgttgaagatacccgtatacttctcgcccgattccgcgttagcct 357
           |||| ||||| ||||||||||||||||| || ||||| || || ||| | || || || |
Sbjct: 294 tatcgtcccttaccctgttgaagataccagtgtacttttcacctgatgctgcatttgcat 353

                                             
Query: 358 catcccactcaccaaatggtggaacagccacttc 391
           ||||||| |||||||| ||||| |||||||||||
Sbjct: 354 catcccattcaccaaagggtggtacagccacttc 387



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 40/43 (93%)
 Strand = Plus / Plus

                                                      
Query: 196 cattttgtcaaagtatgcagcaaggacatgtctgttgcacctt 238
           |||||| ||||||||||||||||| |||| |||||||||||||
Sbjct: 195 cattttctcaaagtatgcagcaagaacatttctgttgcacctt 237



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                               
Query: 526 tgtttgactgcattggtgaagcagaccctgcagcatttctgtaagggcttct 577
           |||||||||||||||| ||||||||||| |||||  | ||||| ||||||||
Sbjct: 513 tgtttgactgcattggcgaagcagacccagcagctgtcctgtaggggcttct 564
to top
>ref|XM_465875.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 819

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 72/86 (83%)
 Strand = Plus / Minus

                                                                       
Query: 309 accctgttgaagatacccgtatacttctcgcccgattccgcgttagcctcatcccactca 368
           |||||||| || || || || |||||||| || ||| |||| ||||| |||||||| |||
Sbjct: 653 accctgttaaaaatgccggtgtacttctccccagatgccgcattagcatcatcccaatca 594

                                     
Query: 369 ccaaatggtggaacagccacttcatc 394
           |||||||| || |||| |||||||||
Sbjct: 593 ccaaatggaggtacagtcacttcatc 568
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 72/86 (83%)
 Strand = Plus / Minus

                                                                            
Query: 309      accctgttgaagatacccgtatacttctcgcccgattccgcgttagcctcatcccactca 368
                |||||||| || || || || |||||||| || ||| |||| ||||| |||||||| |||
Sbjct: 18050405 accctgttaaaaatgccggtgtacttctccccagatgccgcattagcatcatcccaatca 18050346

                                          
Query: 369      ccaaatggtggaacagccacttcatc 394
                |||||||| || |||| |||||||||
Sbjct: 18050345 ccaaatggaggtacagtcacttcatc 18050320
to top
>dbj|AP005285.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1003_F04
          Length = 139563

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 72/86 (83%)
 Strand = Plus / Minus

                                                                          
Query: 309    accctgttgaagatacccgtatacttctcgcccgattccgcgttagcctcatcccactca 368
              |||||||| || || || || |||||||| || ||| |||| ||||| |||||||| |||
Sbjct: 111999 accctgttaaaaatgccggtgtacttctccccagatgccgcattagcatcatcccaatca 111940

                                        
Query: 369    ccaaatggtggaacagccacttcatc 394
              |||||||| || |||| |||||||||
Sbjct: 111939 ccaaatggaggtacagtcacttcatc 111914
to top
>gb|AC003953.1| Homo sapiens chromosome 9, P1 clone 8660 (LBNL H105), complete sequence
          Length = 75871

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 106   tatattttggtgacaaattctt 127
             ||||||||||||||||||||||
Sbjct: 70476 tatattttggtgacaaattctt 70497
to top
>emb|AL391475.7| Human DNA sequence from clone RP11-33G16 on chromosome 9 Contains a
             novel gene, complete sequence
          Length = 163058

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 106   tatattttggtgacaaattctt 127
             ||||||||||||||||||||||
Sbjct: 78765 tatattttggtgacaaattctt 78786
to top
>emb|AL354831.18| Human DNA sequence from clone RP11-188A23 on chromosome 13 Contains a
             novel gene and a CpG island, complete sequence
          Length = 144586

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 90    aaagtatacatgaatatatatt 111
             ||||||||||||||||||||||
Sbjct: 62881 aaagtatacatgaatatatatt 62902
to top
>gb|AC118646.23| Mus musculus chromosome 15, clone RP24-116A18, complete sequence
          Length = 205272

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 544   aagcagaccctgcagcatttc 564
             |||||||||||||||||||||
Sbjct: 81138 aagcagaccctgcagcatttc 81158
to top
>gb|BC050398.2| Homo sapiens PRP40 pre-mRNA processing factor 40 homolog B (S.
            cerevisiae), mRNA (cDNA clone IMAGE:6046382), partial cds
          Length = 2444

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 544  aagcagaccctgcagcatttc 564
            |||||||||||||||||||||
Sbjct: 1118 aagcagaccctgcagcatttc 1138
to top
>gb|BC031917.1| Homo sapiens PRP40 pre-mRNA processing factor 40 homolog B (S.
           cerevisiae), mRNA (cDNA clone IMAGE:4999464)
          Length = 2942

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 544 aagcagaccctgcagcatttc 564
           |||||||||||||||||||||
Sbjct: 878 aagcagaccctgcagcatttc 898
to top
>gb|BC067364.1| Homo sapiens PRP40 pre-mRNA processing factor 40 homolog B (S.
            cerevisiae), transcript variant 1, mRNA (cDNA clone
            MGC:71266 IMAGE:6644672), complete cds
          Length = 3172

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 544  aagcagaccctgcagcatttc 564
            |||||||||||||||||||||
Sbjct: 1103 aagcagaccctgcagcatttc 1123
to top
>gb|BC082994.1| Mus musculus PRP40 pre-mRNA processing factor 40 homolog B (yeast),
            mRNA (cDNA clone MGC:91243 IMAGE:6333535), complete cds
          Length = 3390

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 544  aagcagaccctgcagcatttc 564
            |||||||||||||||||||||
Sbjct: 1136 aagcagaccctgcagcatttc 1156
to top
>gb|BC058389.1| Mus musculus PRP40 pre-mRNA processing factor 40 homolog B (yeast),
            mRNA (cDNA clone IMAGE:6825788)
          Length = 4146

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 544  aagcagaccctgcagcatttc 564
            |||||||||||||||||||||
Sbjct: 2026 aagcagaccctgcagcatttc 2046
to top
>gb|BC051961.1| Mus musculus PRP40 pre-mRNA processing factor 40 homolog B (yeast),
            mRNA (cDNA clone IMAGE:5689342), partial cds
          Length = 3161

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 544  aagcagaccctgcagcatttc 564
            |||||||||||||||||||||
Sbjct: 1101 aagcagaccctgcagcatttc 1121
to top
>ref|NM_001031698.1| Homo sapiens PRP40 pre-mRNA processing factor 40 homolog B (S.
            cerevisiae) (PRPF40B), transcript variant 1, mRNA
          Length = 3172

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 544  aagcagaccctgcagcatttc 564
            |||||||||||||||||||||
Sbjct: 1103 aagcagaccctgcagcatttc 1123
to top
>ref|NM_012272.1| Homo sapiens PRP40 pre-mRNA processing factor 40 homolog B (S.
            cerevisiae) (PRPF40B), transcript variant 2, mRNA
          Length = 3698

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 544  aagcagaccctgcagcatttc 564
            |||||||||||||||||||||
Sbjct: 1572 aagcagaccctgcagcatttc 1592
to top
>emb|AL157886.13| Human DNA sequence from clone RP11-59M22 on chromosome 9q21.31-21.33,
              complete sequence
          Length = 156956

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 94     tatacatgaatatatattttg 114
              |||||||||||||||||||||
Sbjct: 121197 tatacatgaatatatattttg 121177
to top
>emb|AL834216.1|HSM805637 Homo sapiens mRNA; cDNA DKFZp434O1520 (from clone DKFZp434O1520)
          Length = 3698

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 544  aagcagaccctgcagcatttc 564
            |||||||||||||||||||||
Sbjct: 1572 aagcagaccctgcagcatttc 1592
to top
>ref|NM_018786.1| Mus musculus PRP40 pre-mRNA processing factor 40 homolog B (yeast)
            (Prpf40b), mRNA
          Length = 3183

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 544  aagcagaccctgcagcatttc 564
            |||||||||||||||||||||
Sbjct: 1122 aagcagaccctgcagcatttc 1142
to top
>dbj|AK140075.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length
            enriched library, clone:B230206H23
            product:Huntingtin-interacting protein HYPC (Fragment)
            homolog [Homo sapiens], full insert sequence
          Length = 2741

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 544  aagcagaccctgcagcatttc 564
            |||||||||||||||||||||
Sbjct: 1291 aagcagaccctgcagcatttc 1311
to top
>dbj|AK164947.1| Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched
            library, clone:E030045F16 product:Huntingtin-interacting
            protein HYPC (Fragment) homolog [Homo sapiens], full
            insert sequence
          Length = 2996

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 544  aagcagaccctgcagcatttc 564
            |||||||||||||||||||||
Sbjct: 1335 aagcagaccctgcagcatttc 1355
to top
>gb|AC020612.40| Homo sapiens 12 BAC RP11-133N21 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 188928

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 544    aagcagaccctgcagcatttc 564
              |||||||||||||||||||||
Sbjct: 109392 aagcagaccctgcagcatttc 109412
to top
>gb|AF135440.1|AF135440 Mus musculus huntington yeast partner C (Hypc) mRNA, complete cds
          Length = 3183

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 544  aagcagaccctgcagcatttc 564
            |||||||||||||||||||||
Sbjct: 1122 aagcagaccctgcagcatttc 1142
to top
>gb|AC161198.5| Mus musculus chromosome 15, clone RP23-34E23, complete sequence
          Length = 237801

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 544    aagcagaccctgcagcatttc 564
              |||||||||||||||||||||
Sbjct: 219807 aagcagaccctgcagcatttc 219827
to top
>gb|AC134555.4| Mus musculus BAC clone RP24-320K4 from 17, complete sequence
          Length = 174388

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 265    actgttgcctggctgaagagt 285
              |||||||||||||||||||||
Sbjct: 105556 actgttgcctggctgaagagt 105536
to top
>gb|AY702979.1| Capsicum annuum clone YAC YCA22D8 genomic sequence
          Length = 103975

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   attttggtgacaaattcttc 128
             ||||||||||||||||||||
Sbjct: 69048 attttggtgacaaattcttc 69067
to top
>gb|AC102597.22| Mus musculus chromosome 18, clone RP23-361H2, complete sequence
          Length = 204401

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 45     cataggtacacactcacacc 64
              ||||||||||||||||||||
Sbjct: 125568 cataggtacacactcacacc 125587
to top
>gb|AE017261.1| Picrophilus torridus DSM 9790, complete genome
          Length = 1545895

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 95     atacatgaatatatattttg 114
              ||||||||||||||||||||
Sbjct: 920879 atacatgaatatatattttg 920860
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 493      ttccagctgtcctgttcctc 512
                ||||||||||||||||||||
Sbjct: 31081282 ttccagctgtcctgttcctc 31081301
to top
>gb|AY465058.1| Cryptosporidium parvum chromosome 4 oocyst wall protein 7 precursor
            (COWP7) gene, complete cds
          Length = 3154

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 523  aactgtttgactgcattggt 542
            ||||||||||||||||||||
Sbjct: 2611 aactgtttgactgcattggt 2592
to top
>emb|CR318593.15| Zebrafish DNA sequence from clone CH211-160O17 in linkage group 11,
             complete sequence
          Length = 166807

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 95    atacatgaatatatattttg 114
             ||||||||||||||||||||
Sbjct: 49256 atacatgaatatatattttg 49275
to top
>gb|AC127563.4| Mus musculus BAC clone RP24-283E13 from chromosome 10, complete
             sequence
          Length = 150502

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    tatacatgaatatatatttt 113
             ||||||||||||||||||||
Sbjct: 57586 tatacatgaatatatatttt 57605
to top
>gb|AC079887.17| Oryza sativa (japonica cultivar-group) chromosome 3 BAC OSJNBa0040E01
             genomic sequence, complete sequence
          Length = 168759

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 493   ttccagctgtcctgttcctc 512
             ||||||||||||||||||||
Sbjct: 14782 ttccagctgtcctgttcctc 14763
to top
>ref|XM_662477.1| Cryptosporidium hominis TU502 oocyst wall protein 7 precursor
           (Chro.40066) partial mRNA
          Length = 876

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 523 aactgtttgactgcattggt 542
           ||||||||||||||||||||
Sbjct: 333 aactgtttgactgcattggt 314
to top
>gb|AC148239.7| Medicago truncatula clone mth2-5d7, complete sequence
          Length = 103609

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 103   atatatattttggtgacaaa 122
             ||||||||||||||||||||
Sbjct: 69887 atatatattttggtgacaaa 69906
to top
>emb|AL357518.15| Human DNA sequence from clone RP11-679B17 on chromosome 6 Contains a
             novel gene and a CpG island, complete sequence
          Length = 115378

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 94    tatacatgaatatatatttt 113
             ||||||||||||||||||||
Sbjct: 81054 tatacatgaatatatatttt 81035
to top
>emb|CR848759.4| Zebrafish DNA sequence from clone CH211-229D2 in linkage group 15,
              complete sequence
          Length = 167536

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     acaatgcaatcataggtaca 54
              ||||||||||||||||||||
Sbjct: 123900 acaatgcaatcataggtaca 123881
to top
>gb|AC159616.2| Mus musculus BAC clone RP24-497G20 from chromosome 12, complete
            sequence
          Length = 160836

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 98   catgaatatatattttggtg 117
            ||||||||||||||||||||
Sbjct: 5844 catgaatatatattttggtg 5863
to top
>gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genomic sequence,
            complete sequence
          Length = 128017

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 493  ttccagctgtcctgttcctc 512
            ||||||||||||||||||||
Sbjct: 1923 ttccagctgtcctgttcctc 1942
to top
>ref|XM_625656.1| Cryptosporidium parvum Iowa II cryptosporidium oocyst wall protein 7,
            CpCOWP7 (cgd4_500), partial mRNA
          Length = 2523

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 523  aactgtttgactgcattggt 542
            ||||||||||||||||||||
Sbjct: 1980 aactgtttgactgcattggt 1961
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 493      ttccagctgtcctgttcctc 512
                ||||||||||||||||||||
Sbjct: 31171805 ttccagctgtcctgttcctc 31171824
to top
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 632     ttgcgcgggttcgcggtgatggggatcg 659
               ||||||||| ||||||||||||| ||||
Sbjct: 2870595 ttgcgcgggctcgcggtgatgggcatcg 2870622
to top
>gb|AC098485.6| Homo sapiens BAC clone CTD-2053I13 from 2, complete sequence
          Length = 88404

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 9     aataagcaaagaacataaat 28
             ||||||||||||||||||||
Sbjct: 42262 aataagcaaagaacataaat 42243
to top
>gb|AF130354.1|AF130354 Pimephales promelas vitellogenin precursor (Vtg) mRNA, complete cds
          Length = 4020

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 200  ttgtcaaagtatgcagcaag 219
            ||||||||||||||||||||
Sbjct: 3512 ttgtcaaagtatgcagcaag 3493
to top
>dbj|AK106620.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-113-A11, full
            insert sequence
          Length = 1799

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 493  ttccagctgtcctgttcctc 512
            ||||||||||||||||||||
Sbjct: 1134 ttccagctgtcctgttcctc 1153
to top
>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 95      atacatgaatatatattttg 114
               ||||||||||||||||||||
Sbjct: 2601492 atacatgaatatatattttg 2601511
to top
>dbj|AP001891.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-356E17, complete
             sequence
          Length = 210691

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 93    gtatacatgaatatatattttggt 116
             ||||||||| ||||||||||||||
Sbjct: 76401 gtatacatgtatatatattttggt 76378
to top
>emb|AL929530.9| Zebrafish DNA sequence from clone CH211-190H2, complete sequence
          Length = 152963

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     acaatgcaatcataggtaca 54
              ||||||||||||||||||||
Sbjct: 132239 acaatgcaatcataggtaca 132220
to top
>emb|CR974582.5| Mouse DNA sequence from clone RP23-84L8 on chromosome 12, complete
             sequence
          Length = 165056

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 98    catgaatatatattttggtg 117
             ||||||||||||||||||||
Sbjct: 52305 catgaatatatattttggtg 52286


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,853,606
Number of Sequences: 3902068
Number of extensions: 5853606
Number of successful extensions: 112186
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 111900
Number of HSP's gapped (non-prelim): 286
length of query: 661
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 638
effective length of database: 17,143,297,704
effective search space: 10937423935152
effective search space used: 10937423935152
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top