Clone Name | rbasd19g11 |
---|---|
Clone Library Name | barley_pub |
>gb|AC078891.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0092N12, complete sequence Length = 109198 Score = 137 bits (69), Expect = 4e-29 Identities = 137/158 (86%), Gaps = 4/158 (2%) Strand = Plus / Minus Query: 109 aaaacttactgcagnaatcaagcttcagtcttt-tgctcttctgctgcttggtgatactg 167 |||||||||||||| |||||| |||||| || ||||| || || |||||||||||||| Sbjct: 15486 aaaacttactgcagcaatcaaatttcagttattgtgctcatcagcagcttggtgatactg 15427 Query: 168 gtagtcaccttcctcgtatgcctcaccttcctcagggccttcaggttctgtgttg---gg 224 |||||||||||| || |||||||| || || |||||||||||||||||||||||| || Sbjct: 15426 gtagtcaccttcatcatatgcctcgccctcttcagggccttcaggttctgtgttgttagg 15367 Query: 225 ttgtgcctgatagtactcatgctcatgtctctttgagc 262 ||| ||||||||||||||||||||||| |||||||| Sbjct: 15366 ttgcatctgatagtactcatgctcatgtcgctttgagc 15329 Score = 69.9 bits (35), Expect = 9e-09 Identities = 67/78 (85%) Strand = Plus / Minus Query: 421 tgaccgcggtcacgttcgtaactngcacgcccatcatctctctcacgatccctgcctctc 480 ||||| ||||| ||||| | ||| |||||| | | |||||||||||| |||||||||||| Sbjct: 15221 tgaccacggtcccgttcatgacttgcacgctcgtaatctctctcacggtccctgcctctc 15162 Query: 481 tcacggtgacgatcatga 498 ||||| || ||||||||| Sbjct: 15161 tcacgatggcgatcatga 15144
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 137 bits (69), Expect = 4e-29 Identities = 137/158 (86%), Gaps = 4/158 (2%) Strand = Plus / Plus Query: 109 aaaacttactgcagnaatcaagcttcagtcttt-tgctcttctgctgcttggtgatactg 167 |||||||||||||| |||||| |||||| || ||||| || || |||||||||||||| Sbjct: 987068 aaaacttactgcagcaatcaaatttcagttattgtgctcatcagcagcttggtgatactg 987127 Query: 168 gtagtcaccttcctcgtatgcctcaccttcctcagggccttcaggttctgtgttg---gg 224 |||||||||||| || |||||||| || || |||||||||||||||||||||||| || Sbjct: 987128 gtagtcaccttcatcatatgcctcgccctcttcagggccttcaggttctgtgttgttagg 987187 Query: 225 ttgtgcctgatagtactcatgctcatgtctctttgagc 262 ||| ||||||||||||||||||||||| |||||||| Sbjct: 987188 ttgcatctgatagtactcatgctcatgtcgctttgagc 987225 Score = 69.9 bits (35), Expect = 9e-09 Identities = 67/78 (85%) Strand = Plus / Plus Query: 421 tgaccgcggtcacgttcgtaactngcacgcccatcatctctctcacgatccctgcctctc 480 ||||| ||||| ||||| | ||| |||||| | | |||||||||||| |||||||||||| Sbjct: 987333 tgaccacggtcccgttcatgacttgcacgctcgtaatctctctcacggtccctgcctctc 987392 Query: 481 tcacggtgacgatcatga 498 ||||| || ||||||||| Sbjct: 987393 tcacgatggcgatcatga 987410
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 137 bits (69), Expect = 4e-29 Identities = 137/158 (86%), Gaps = 4/158 (2%) Strand = Plus / Plus Query: 109 aaaacttactgcagnaatcaagcttcagtcttt-tgctcttctgctgcttggtgatactg 167 |||||||||||||| |||||| |||||| || ||||| || || |||||||||||||| Sbjct: 987068 aaaacttactgcagcaatcaaatttcagttattgtgctcatcagcagcttggtgatactg 987127 Query: 168 gtagtcaccttcctcgtatgcctcaccttcctcagggccttcaggttctgtgttg---gg 224 |||||||||||| || |||||||| || || |||||||||||||||||||||||| || Sbjct: 987128 gtagtcaccttcatcatatgcctcgccctcttcagggccttcaggttctgtgttgttagg 987187 Query: 225 ttgtgcctgatagtactcatgctcatgtctctttgagc 262 ||| ||||||||||||||||||||||| |||||||| Sbjct: 987188 ttgcatctgatagtactcatgctcatgtcgctttgagc 987225 Score = 69.9 bits (35), Expect = 9e-09 Identities = 67/78 (85%) Strand = Plus / Plus Query: 421 tgaccgcggtcacgttcgtaactngcacgcccatcatctctctcacgatccctgcctctc 480 ||||| ||||| ||||| | ||| |||||| | | |||||||||||| |||||||||||| Sbjct: 987333 tgaccacggtcccgttcatgacttgcacgctcgtaatctctctcacggtccctgcctctc 987392 Query: 481 tcacggtgacgatcatga 498 ||||| || ||||||||| Sbjct: 987393 tcacgatggcgatcatga 987410
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 137 bits (69), Expect = 4e-29 Identities = 137/158 (86%), Gaps = 4/158 (2%) Strand = Plus / Plus Query: 109 aaaacttactgcagnaatcaagcttcagtcttt-tgctcttctgctgcttggtgatactg 167 |||||||||||||| |||||| |||||| || ||||| || || |||||||||||||| Sbjct: 987065 aaaacttactgcagcaatcaaatttcagttattgtgctcatcagcagcttggtgatactg 987124 Query: 168 gtagtcaccttcctcgtatgcctcaccttcctcagggccttcaggttctgtgttg---gg 224 |||||||||||| || |||||||| || || |||||||||||||||||||||||| || Sbjct: 987125 gtagtcaccttcatcatatgcctcgccctcttcagggccttcaggttctgtgttgttagg 987184 Query: 225 ttgtgcctgatagtactcatgctcatgtctctttgagc 262 ||| ||||||||||||||||||||||| |||||||| Sbjct: 987185 ttgcatctgatagtactcatgctcatgtcgctttgagc 987222 Score = 69.9 bits (35), Expect = 9e-09 Identities = 67/78 (85%) Strand = Plus / Plus Query: 421 tgaccgcggtcacgttcgtaactngcacgcccatcatctctctcacgatccctgcctctc 480 ||||| ||||| ||||| | ||| |||||| | | |||||||||||| |||||||||||| Sbjct: 987330 tgaccacggtcccgttcatgacttgcacgctcgtaatctctctcacggtccctgcctctc 987389 Query: 481 tcacggtgacgatcatga 498 ||||| || ||||||||| Sbjct: 987390 tcacgatggcgatcatga 987407
>ref|NM_194601.1| Oryza sativa (japonica cultivar-group) putative U1 small nuclear ribonucleoprotein (OSJNBa0092N12.2), mRNA Length = 1476 Score = 123 bits (62), Expect = 7e-25 Identities = 100/112 (89%), Gaps = 3/112 (2%) Strand = Plus / Minus Query: 154 gcttggtgatactggtagtcaccttcctcgtatgcctcaccttcctcagggccttcaggt 213 |||||||||||||||||||||||||| || |||||||| || || ||||||||||||||| Sbjct: 1454 gcttggtgatactggtagtcaccttcatcatatgcctcgccctcttcagggccttcaggt 1395 Query: 214 tctgtgttg---ggttgtgcctgatagtactcatgctcatgtctctttgagc 262 ||||||||| ||||| ||||||||||||||||||||||| |||||||| Sbjct: 1394 tctgtgttgttaggttgcatctgatagtactcatgctcatgtcgctttgagc 1343 Score = 69.9 bits (35), Expect = 9e-09 Identities = 67/78 (85%) Strand = Plus / Minus Query: 421 tgaccgcggtcacgttcgtaactngcacgcccatcatctctctcacgatccctgcctctc 480 ||||| ||||| ||||| | ||| |||||| | | |||||||||||| |||||||||||| Sbjct: 1235 tgaccacggtcccgttcatgacttgcacgctcgtaatctctctcacggtccctgcctctc 1176 Query: 481 tcacggtgacgatcatga 498 ||||| || ||||||||| Sbjct: 1175 tcacgatggcgatcatga 1158
>gb|DQ377064.1| Oryza sativa (japonica cultivar-group) U1 small nuclear ribonucleoprotein 70K splice variant 2 mRNA, complete cds, alternatively spliced Length = 3284 Score = 123 bits (62), Expect = 7e-25 Identities = 100/112 (89%), Gaps = 3/112 (2%) Strand = Plus / Minus Query: 154 gcttggtgatactggtagtcaccttcctcgtatgcctcaccttcctcagggccttcaggt 213 |||||||||||||||||||||||||| || |||||||| || || ||||||||||||||| Sbjct: 2924 gcttggtgatactggtagtcaccttcatcatatgcctcgccctcttcagggccttcaggt 2865 Query: 214 tctgtgttg---ggttgtgcctgatagtactcatgctcatgtctctttgagc 262 ||||||||| ||||| ||||||||||||||||||||||| |||||||| Sbjct: 2864 tctgtgttgttaggttgcatctgatagtactcatgctcatgtcgctttgagc 2813 Score = 69.9 bits (35), Expect = 9e-09 Identities = 67/78 (85%) Strand = Plus / Minus Query: 421 tgaccgcggtcacgttcgtaactngcacgcccatcatctctctcacgatccctgcctctc 480 ||||| ||||| ||||| | ||| |||||| | | |||||||||||| |||||||||||| Sbjct: 2705 tgaccacggtcccgttcatgacttgcacgctcgtaatctctctcacggtccctgcctctc 2646 Query: 481 tcacggtgacgatcatga 498 ||||| || ||||||||| Sbjct: 2645 tcacgatggcgatcatga 2628
>gb|DQ377063.1| Oryza sativa (japonica cultivar-group) U1 small nuclear ribonucleoprotein 70K splice variant 1 mRNA, complete cds, alternatively spliced Length = 3443 Score = 123 bits (62), Expect = 7e-25 Identities = 100/112 (89%), Gaps = 3/112 (2%) Strand = Plus / Minus Query: 154 gcttggtgatactggtagtcaccttcctcgtatgcctcaccttcctcagggccttcaggt 213 |||||||||||||||||||||||||| || |||||||| || || ||||||||||||||| Sbjct: 3083 gcttggtgatactggtagtcaccttcatcatatgcctcgccctcttcagggccttcaggt 3024 Query: 214 tctgtgttg---ggttgtgcctgatagtactcatgctcatgtctctttgagc 262 ||||||||| ||||| ||||||||||||||||||||||| |||||||| Sbjct: 3023 tctgtgttgttaggttgcatctgatagtactcatgctcatgtcgctttgagc 2972 Score = 69.9 bits (35), Expect = 9e-09 Identities = 67/78 (85%) Strand = Plus / Minus Query: 421 tgaccgcggtcacgttcgtaactngcacgcccatcatctctctcacgatccctgcctctc 480 ||||| ||||| ||||| | ||| |||||| | | |||||||||||| |||||||||||| Sbjct: 2864 tgaccacggtcccgttcatgacttgcacgctcgtaatctctctcacggtccctgcctctc 2805 Query: 481 tcacggtgacgatcatga 498 ||||| || ||||||||| Sbjct: 2804 tcacgatggcgatcatga 2787
>gb|DQ377062.1| Oryza sativa (japonica cultivar-group) U1 small nuclear ribonucleoprotein 70K mRNA, complete cds, alternatively spliced Length = 1815 Score = 123 bits (62), Expect = 7e-25 Identities = 100/112 (89%), Gaps = 3/112 (2%) Strand = Plus / Minus Query: 154 gcttggtgatactggtagtcaccttcctcgtatgcctcaccttcctcagggccttcaggt 213 |||||||||||||||||||||||||| || |||||||| || || ||||||||||||||| Sbjct: 1455 gcttggtgatactggtagtcaccttcatcatatgcctcgccctcttcagggccttcaggt 1396 Query: 214 tctgtgttg---ggttgtgcctgatagtactcatgctcatgtctctttgagc 262 ||||||||| ||||| ||||||||||||||||||||||| |||||||| Sbjct: 1395 tctgtgttgttaggttgcatctgatagtactcatgctcatgtcgctttgagc 1344 Score = 69.9 bits (35), Expect = 9e-09 Identities = 67/78 (85%) Strand = Plus / Minus Query: 421 tgaccgcggtcacgttcgtaactngcacgcccatcatctctctcacgatccctgcctctc 480 ||||| ||||| ||||| | ||| |||||| | | |||||||||||| |||||||||||| Sbjct: 1236 tgaccacggtcccgttcatgacttgcacgctcgtaatctctctcacggtccctgcctctc 1177 Query: 481 tcacggtgacgatcatga 498 ||||| || ||||||||| Sbjct: 1176 tcacgatggcgatcatga 1159
>dbj|AK100686.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023113P16, full insert sequence Length = 3436 Score = 123 bits (62), Expect = 7e-25 Identities = 100/112 (89%), Gaps = 3/112 (2%) Strand = Plus / Minus Query: 154 gcttggtgatactggtagtcaccttcctcgtatgcctcaccttcctcagggccttcaggt 213 |||||||||||||||||||||||||| || |||||||| || || ||||||||||||||| Sbjct: 3094 gcttggtgatactggtagtcaccttcatcatatgcctcgccctcttcagggccttcaggt 3035 Query: 214 tctgtgttg---ggttgtgcctgatagtactcatgctcatgtctctttgagc 262 ||||||||| ||||| ||||||||||||||||||||||| |||||||| Sbjct: 3034 tctgtgttgttaggttgcatctgatagtactcatgctcatgtcgctttgagc 2983 Score = 69.9 bits (35), Expect = 9e-09 Identities = 67/78 (85%) Strand = Plus / Minus Query: 421 tgaccgcggtcacgttcgtaactngcacgcccatcatctctctcacgatccctgcctctc 480 ||||| ||||| ||||| | ||| |||||| | | |||||||||||| |||||||||||| Sbjct: 2875 tgaccacggtcccgttcatgacttgcacgctcgtaatctctctcacggtccctgcctctc 2816 Query: 481 tcacggtgacgatcatga 498 ||||| || ||||||||| Sbjct: 2815 tcacgatggcgatcatga 2798
>dbj|AK059504.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-A09, full insert sequence Length = 1796 Score = 123 bits (62), Expect = 7e-25 Identities = 100/112 (89%), Gaps = 3/112 (2%) Strand = Plus / Minus Query: 154 gcttggtgatactggtagtcaccttcctcgtatgcctcaccttcctcagggccttcaggt 213 |||||||||||||||||||||||||| || |||||||| || || ||||||||||||||| Sbjct: 1454 gcttggtgatactggtagtcaccttcatcatatgcctcgccctcttcagggccttcaggt 1395 Query: 214 tctgtgttg---ggttgtgcctgatagtactcatgctcatgtctctttgagc 262 ||||||||| ||||| ||||||||||||||||||||||| |||||||| Sbjct: 1394 tctgtgttgttaggttgcatctgatagtactcatgctcatgtcgctttgagc 1343 Score = 69.9 bits (35), Expect = 9e-09 Identities = 67/78 (85%) Strand = Plus / Minus Query: 421 tgaccgcggtcacgttcgtaactngcacgcccatcatctctctcacgatccctgcctctc 480 ||||| ||||| ||||| | ||| |||||| | | |||||||||||| |||||||||||| Sbjct: 1235 tgaccacggtcccgttcatgacttgcacgctcgtaatctctctcacggtccctgcctctc 1176 Query: 481 tcacggtgacgatcatga 498 ||||| || ||||||||| Sbjct: 1175 tcacgatggcgatcatga 1158
>dbj|AK121007.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023046L24, full insert sequence Length = 1798 Score = 115 bits (58), Expect = 2e-22 Identities = 99/112 (88%), Gaps = 3/112 (2%) Strand = Plus / Minus Query: 154 gcttggtgatactggtagtcaccttcctcgtatgcctcaccttcctcagggccttcaggt 213 |||||||||||||||||||||||| | || |||||||| || || ||||||||||||||| Sbjct: 1455 gcttggtgatactggtagtcacctccatcatatgcctcgccctcttcagggccttcaggt 1396 Query: 214 tctgtgttg---ggttgtgcctgatagtactcatgctcatgtctctttgagc 262 ||||||||| ||||| ||||||||||||||||||||||| |||||||| Sbjct: 1395 tctgtgttgttaggttgcatctgatagtactcatgctcatgtcgctttgagc 1344 Score = 69.9 bits (35), Expect = 9e-09 Identities = 67/78 (85%) Strand = Plus / Minus Query: 421 tgaccgcggtcacgttcgtaactngcacgcccatcatctctctcacgatccctgcctctc 480 ||||| ||||| ||||| | ||| |||||| | | |||||||||||| |||||||||||| Sbjct: 1236 tgaccacggtcccgttcatgacttgcacgctcgtaatctctctcacggtccctgcctctc 1177 Query: 481 tcacggtgacgatcatga 498 ||||| || ||||||||| Sbjct: 1176 tcacgatggcgatcatga 1159
>gb|AY627768.1| Zea mays U1 snRNP mRNA, complete cds; alternatively spliced Length = 3299 Score = 87.7 bits (44), Expect = 4e-14 Identities = 50/52 (96%) Strand = Plus / Minus Query: 158 ggtgatactggtagtcaccttcctcgtatgcctcaccttcctcagggccttc 209 |||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct: 3148 ggtgatactggtagtcgccttcctcatatgcctcaccttcctcagggccttc 3097 Score = 60.0 bits (30), Expect = 8e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 464 cacgatccctgcctctctcacggtgacgatcatgagagagaccacg 509 |||| ||||||||||||||||| || |||||||||||| ||||||| Sbjct: 2800 cacggtccctgcctctctcacgatggcgatcatgagagcgaccacg 2755
>gb|AY627767.1| Zea mays U1 snRNP mRNA, complete cds; alternatively spliced Length = 3463 Score = 87.7 bits (44), Expect = 4e-14 Identities = 50/52 (96%) Strand = Plus / Minus Query: 158 ggtgatactggtagtcaccttcctcgtatgcctcaccttcctcagggccttc 209 |||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct: 3312 ggtgatactggtagtcgccttcctcatatgcctcaccttcctcagggccttc 3261 Score = 60.0 bits (30), Expect = 8e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 464 cacgatccctgcctctctcacggtgacgatcatgagagagaccacg 509 |||| ||||||||||||||||| || |||||||||||| ||||||| Sbjct: 2964 cacggtccctgcctctctcacgatggcgatcatgagagcgaccacg 2919
>gb|AY627766.1| Zea mays U1 snRNP mRNA, complete cds; alternatively spliced Length = 1647 Score = 87.7 bits (44), Expect = 4e-14 Identities = 50/52 (96%) Strand = Plus / Minus Query: 158 ggtgatactggtagtcaccttcctcgtatgcctcaccttcctcagggccttc 209 |||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct: 1496 ggtgatactggtagtcgccttcctcatatgcctcaccttcctcagggccttc 1445 Score = 60.0 bits (30), Expect = 8e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 464 cacgatccctgcctctctcacggtgacgatcatgagagagaccacg 509 |||| ||||||||||||||||| || |||||||||||| ||||||| Sbjct: 1148 cacggtccctgcctctctcacgatggcgatcatgagagcgaccacg 1103
>gb|AY627765.1| Zea mays U1 snRNP gene, complete cds; alternatively spliced Length = 5550 Score = 87.7 bits (44), Expect = 4e-14 Identities = 50/52 (96%) Strand = Plus / Minus Query: 158 ggtgatactggtagtcaccttcctcgtatgcctcaccttcctcagggccttc 209 |||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct: 4751 ggtgatactggtagtcgccttcctcatatgcctcaccttcctcagggccttc 4700 Score = 60.0 bits (30), Expect = 8e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 464 cacgatccctgcctctctcacggtgacgatcatgagagagaccacg 509 |||| ||||||||||||||||| || |||||||||||| ||||||| Sbjct: 4403 cacggtccctgcctctctcacgatggcgatcatgagagcgaccacg 4358
>gb|AY108570.1| Zea mays PCO063456 mRNA sequence Length = 1603 Score = 87.7 bits (44), Expect = 4e-14 Identities = 50/52 (96%) Strand = Plus / Minus Query: 158 ggtgatactggtagtcaccttcctcgtatgcctcaccttcctcagggccttc 209 |||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct: 1214 ggtgatactggtagtcgccttcctcatatgcctcaccttcctcagggccttc 1163 Score = 60.0 bits (30), Expect = 8e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 464 cacgatccctgcctctctcacggtgacgatcatgagagagaccacg 509 |||| ||||||||||||||||| || |||||||||||| ||||||| Sbjct: 866 cacggtccctgcctctctcacgatggcgatcatgagagcgaccacg 821
>gb|AC182706.2| Populus trichocarpa clone Pop1-79P19, complete sequence Length = 102226 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 450 cccatcatctctctcacgatccc 472 ||||||||||||||||||||||| Sbjct: 47648 cccatcatctctctcacgatccc 47626
>gb|AC146428.3| Pan troglodytes BAC clone RP43-22M18 from 7, complete sequence Length = 194995 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 393 attgtattcagcatccctatc 413 ||||||||||||||||||||| Sbjct: 23819 attgtattcagcatccctatc 23839
>gb|AC095039.3| Homo sapiens BAC clone RP11-12G8 from 7, complete sequence Length = 70416 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 393 attgtattcagcatccctatc 413 ||||||||||||||||||||| Sbjct: 60774 attgtattcagcatccctatc 60754
>emb|AL031589.10|HS11O7 Human DNA sequence from clone RP6-11O7 on chromosome 22q13.1-13.2, complete sequence Length = 115932 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 339 agagccataatgcttcccata 359 ||||||||||||||||||||| Sbjct: 81761 agagccataatgcttcccata 81741
>emb|CR627316.1| Homo sapiens genomic DNA; cDNA DKFZp686O11128 (from clone DKFZp686O11128) Length = 4350 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 339 agagccataatgcttcccata 359 ||||||||||||||||||||| Sbjct: 2627 agagccataatgcttcccata 2607
>ref|XM_482855.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1787 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 tcatggccatgcccatgccc 290 |||||||||||||||||||| Sbjct: 341 tcatggccatgcccatgccc 322
>ref|XM_507589.1| PREDICTED Oryza sativa (japonica cultivar-group), P0104B02.41 mRNA Length = 1972 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 tcatggccatgcccatgccc 290 |||||||||||||||||||| Sbjct: 344 tcatggccatgcccatgccc 325
>ref|XM_507265.2| PREDICTED Oryza sativa (japonica cultivar-group), P0104B02.41 mRNA Length = 2555 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 tcatggccatgcccatgccc 290 |||||||||||||||||||| Sbjct: 345 tcatggccatgcccatgccc 326
>gb|AC091458.5| Mus musculus chromosome 12, clone RP23-68M8, complete sequence Length = 289751 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 129 agcttcagtcttttgctcttctgc 152 |||| ||||||||||||||||||| Sbjct: 5837 agctccagtcttttgctcttctgc 5860
>ref|XM_841434.1| Trypanosoma brucei TREU927 hypothetical protein (Tb927.1.4950) partial mRNA Length = 252 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 510 atccttctccctatcgtgat 529 |||||||||||||||||||| Sbjct: 53 atccttctccctatcgtgat 72
>emb|X14112.1|HE1CG Human herpesvirus 1 complete genome Length = 152261 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 ctttcagtttcatggccatg 281 |||||||||||||||||||| Sbjct: 69785 ctttcagtttcatggccatg 69804
>gb|AC116596.3| Mus musculus BAC clone RP24-335P21 from chromosome 15, complete sequence Length = 165103 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 371 tcctgtcatgctttggctca 390 |||||||||||||||||||| Sbjct: 41674 tcctgtcatgctttggctca 41655
>dbj|AB252867.1| Human herpesvirus 1 UL34 gene for virion protein, complete cds Length = 828 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 ctttcagtttcatggccatg 281 |||||||||||||||||||| Sbjct: 153 ctttcagtttcatggccatg 172
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 479 tctcacggtgacgatcatga 498 |||||||||||||||||||| Sbjct: 3158914 tctcacggtgacgatcatga 3158895
>dbj|AP009046.1| Hyphantria cunea nucleopolyhedrovirus genomic DNA, complete genome Length = 132959 Score = 40.1 bits (20), Expect = 7.8 Identities = 22/23 (95%) Strand = Plus / Plus Query: 425 cgcggtcacgttcgtaactngca 447 ||||||||||||||||||| ||| Sbjct: 116549 cgcggtcacgttcgtaacttgca 116571
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 tcatggccatgcccatgccc 290 |||||||||||||||||||| Sbjct: 22987384 tcatggccatgcccatgccc 22987403
>gb|AC108938.3| Homo sapiens BAC clone RP11-701A10 from 2, complete sequence Length = 175222 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 ttgtgttgctcatgctggtt 338 |||||||||||||||||||| Sbjct: 71056 ttgtgttgctcatgctggtt 71075
>gb|AE009499.1| Brucella melitensis 16M chromosome I, section 56 of 195 of the complete sequence Length = 10455 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 ttcagtttcatggccatgcc 283 |||||||||||||||||||| Sbjct: 3734 ttcagtttcatggccatgcc 3715
>gb|AC155299.2| Mus musculus BAC clone RP24-229D17 from chromosome 15, complete sequence Length = 198559 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 371 tcctgtcatgctttggctca 390 |||||||||||||||||||| Sbjct: 13371 tcctgtcatgctttggctca 13390
>gb|AC013271.4| Homo sapiens BAC clone RP11-385J6 from 2, complete sequence Length = 155702 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 ttgtgttgctcatgctggtt 338 |||||||||||||||||||| Sbjct: 9527 ttgtgttgctcatgctggtt 9546
>gb|AC112229.4| Homo sapiens BAC clone RP13-1039J1 from 2, complete sequence Length = 154279 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 ttgtgttgctcatgctggtt 338 |||||||||||||||||||| Sbjct: 17560 ttgtgttgctcatgctggtt 17541
>dbj|AP006461.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0104B02 Length = 169588 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 tcatggccatgcccatgccc 290 |||||||||||||||||||| Sbjct: 161222 tcatggccatgcccatgccc 161241
>dbj|AP004585.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0470B03 Length = 163371 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 tcatggccatgcccatgccc 290 |||||||||||||||||||| Sbjct: 47112 tcatggccatgcccatgccc 47131
>ref|XM_557151.1| Anopheles gambiae str. PEST ENSANGP00000028277 (ENSANGG00000010999), partial mRNA Length = 1614 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 tcagtcttttgctcttctgc 152 |||||||||||||||||||| Sbjct: 1565 tcagtcttttgctcttctgc 1546
>ref|XM_316511.2| Anopheles gambiae str. PEST ENSANGP00000013488 (ENSANGG00000010999), partial mRNA Length = 2526 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 tcagtcttttgctcttctgc 152 |||||||||||||||||||| Sbjct: 2219 tcagtcttttgctcttctgc 2200
>dbj|AK105607.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-B01, full insert sequence Length = 1786 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 tcatggccatgcccatgccc 290 |||||||||||||||||||| Sbjct: 341 tcatggccatgcccatgccc 322
>dbj|AK102279.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033089E10, full insert sequence Length = 1972 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 tcatggccatgcccatgccc 290 |||||||||||||||||||| Sbjct: 344 tcatggccatgcccatgccc 325
>dbj|AK070501.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054A11, full insert sequence Length = 2555 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 tcatggccatgcccatgccc 290 |||||||||||||||||||| Sbjct: 345 tcatggccatgcccatgccc 326
>emb|BX908754.8| Zebrafish DNA sequence from clone DKEY-196D8 in linkage group 18, complete sequence Length = 94961 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 ttgtgttgctcatgctggtt 338 |||||||||||||||||||| Sbjct: 14634 ttgtgttgctcatgctggtt 14615
>emb|AL591207.15| Mouse DNA sequence from clone RP23-392O3 on chromosome 12, complete sequence Length = 211056 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 129 agcttcagtcttttgctcttctgc 152 |||| ||||||||||||||||||| Sbjct: 101564 agctccagtcttttgctcttctgc 101541 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,668,374 Number of Sequences: 3902068 Number of extensions: 4668374 Number of successful extensions: 115815 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 115549 Number of HSP's gapped (non-prelim): 251 length of query: 573 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 550 effective length of database: 17,143,297,704 effective search space: 9428813737200 effective search space used: 9428813737200 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)