ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd19g11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC078891.2| Oryza sativa (japonica cultivar-group) chromosome... 137 4e-29
2gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome... 137 4e-29
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 137 4e-29
4gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 137 4e-29
5ref|NM_194601.1| Oryza sativa (japonica cultivar-group) putative... 123 7e-25
6gb|DQ377064.1| Oryza sativa (japonica cultivar-group) U1 small n... 123 7e-25
7gb|DQ377063.1| Oryza sativa (japonica cultivar-group) U1 small n... 123 7e-25
8gb|DQ377062.1| Oryza sativa (japonica cultivar-group) U1 small n... 123 7e-25
9dbj|AK100686.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 7e-25
10dbj|AK059504.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 7e-25
11dbj|AK121007.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 2e-22
12gb|AY627768.1| Zea mays U1 snRNP mRNA, complete cds; alternative... 88 4e-14
13gb|AY627767.1| Zea mays U1 snRNP mRNA, complete cds; alternative... 88 4e-14
14gb|AY627766.1| Zea mays U1 snRNP mRNA, complete cds; alternative... 88 4e-14
15gb|AY627765.1| Zea mays U1 snRNP gene, complete cds; alternative... 88 4e-14
16gb|AY108570.1| Zea mays PCO063456 mRNA sequence 88 4e-14
17gb|AC182706.2| Populus trichocarpa clone Pop1-79P19, complete se... 46 0.13
18gb|AC146428.3| Pan troglodytes BAC clone RP43-22M18 from 7, comp... 42 2.0
19gb|AC095039.3| Homo sapiens BAC clone RP11-12G8 from 7, complete... 42 2.0
20emb|AL031589.10|HS11O7 Human DNA sequence from clone RP6-11O7 on... 42 2.0
21emb|CR627316.1| Homo sapiens genomic DNA; cDNA DKFZp686O11128 (f... 42 2.0
22ref|XM_482855.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.8
23ref|XM_507589.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 7.8
24ref|XM_507265.2| PREDICTED Oryza sativa (japonica cultivar-group... 40 7.8
25gb|AC091458.5| Mus musculus chromosome 12, clone RP23-68M8, comp... 40 7.8
26ref|XM_841434.1| Trypanosoma brucei TREU927 hypothetical protein... 40 7.8
27emb|X14112.1|HE1CG Human herpesvirus 1 complete genome 40 7.8
28gb|AC116596.3| Mus musculus BAC clone RP24-335P21 from chromosom... 40 7.8
29dbj|AB252867.1| Human herpesvirus 1 UL34 gene for virion protein... 40 7.8
30gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 7.8
31dbj|AP009046.1| Hyphantria cunea nucleopolyhedrovirus genomic DN... 40 7.8
32dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
33gb|AC108938.3| Homo sapiens BAC clone RP11-701A10 from 2, comple... 40 7.8
34gb|AE009499.1| Brucella melitensis 16M chromosome I, section 56 ... 40 7.8
35gb|AC155299.2| Mus musculus BAC clone RP24-229D17 from chromosom... 40 7.8
36gb|AC013271.4| Homo sapiens BAC clone RP11-385J6 from 2, complet... 40 7.8
37gb|AC112229.4| Homo sapiens BAC clone RP13-1039J1 from 2, comple... 40 7.8
38dbj|AP006461.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
39dbj|AP004585.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
40ref|XM_557151.1| Anopheles gambiae str. PEST ENSANGP00000028277 ... 40 7.8
41ref|XM_316511.2| Anopheles gambiae str. PEST ENSANGP00000013488 ... 40 7.8
42dbj|AK105607.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.8
43dbj|AK102279.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.8
44dbj|AK070501.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.8
45emb|BX908754.8| Zebrafish DNA sequence from clone DKEY-196D8 in ... 40 7.8
46emb|AL591207.15| Mouse DNA sequence from clone RP23-392O3 on chr... 40 7.8

>gb|AC078891.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0092N12, complete sequence
          Length = 109198

 Score =  137 bits (69), Expect = 4e-29
 Identities = 137/158 (86%), Gaps = 4/158 (2%)
 Strand = Plus / Minus

                                                                         
Query: 109   aaaacttactgcagnaatcaagcttcagtcttt-tgctcttctgctgcttggtgatactg 167
             |||||||||||||| ||||||  ||||||  || ||||| || || ||||||||||||||
Sbjct: 15486 aaaacttactgcagcaatcaaatttcagttattgtgctcatcagcagcttggtgatactg 15427

                                                                         
Query: 168   gtagtcaccttcctcgtatgcctcaccttcctcagggccttcaggttctgtgttg---gg 224
             |||||||||||| || |||||||| || || ||||||||||||||||||||||||   ||
Sbjct: 15426 gtagtcaccttcatcatatgcctcgccctcttcagggccttcaggttctgtgttgttagg 15367

                                                   
Query: 225   ttgtgcctgatagtactcatgctcatgtctctttgagc 262
             |||   ||||||||||||||||||||||| ||||||||
Sbjct: 15366 ttgcatctgatagtactcatgctcatgtcgctttgagc 15329



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                         
Query: 421   tgaccgcggtcacgttcgtaactngcacgcccatcatctctctcacgatccctgcctctc 480
             ||||| ||||| ||||| | ||| |||||| | | |||||||||||| ||||||||||||
Sbjct: 15221 tgaccacggtcccgttcatgacttgcacgctcgtaatctctctcacggtccctgcctctc 15162

                               
Query: 481   tcacggtgacgatcatga 498
             ||||| || |||||||||
Sbjct: 15161 tcacgatggcgatcatga 15144



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>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
              Pseudo10p0.0-10p4.4, complete sequence
          Length = 2331000

 Score =  137 bits (69), Expect = 4e-29
 Identities = 137/158 (86%), Gaps = 4/158 (2%)
 Strand = Plus / Plus

                                                                          
Query: 109    aaaacttactgcagnaatcaagcttcagtcttt-tgctcttctgctgcttggtgatactg 167
              |||||||||||||| ||||||  ||||||  || ||||| || || ||||||||||||||
Sbjct: 987068 aaaacttactgcagcaatcaaatttcagttattgtgctcatcagcagcttggtgatactg 987127

                                                                          
Query: 168    gtagtcaccttcctcgtatgcctcaccttcctcagggccttcaggttctgtgttg---gg 224
              |||||||||||| || |||||||| || || ||||||||||||||||||||||||   ||
Sbjct: 987128 gtagtcaccttcatcatatgcctcgccctcttcagggccttcaggttctgtgttgttagg 987187

                                                    
Query: 225    ttgtgcctgatagtactcatgctcatgtctctttgagc 262
              |||   ||||||||||||||||||||||| ||||||||
Sbjct: 987188 ttgcatctgatagtactcatgctcatgtcgctttgagc 987225



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 67/78 (85%)
 Strand = Plus / Plus

                                                                          
Query: 421    tgaccgcggtcacgttcgtaactngcacgcccatcatctctctcacgatccctgcctctc 480
              ||||| ||||| ||||| | ||| |||||| | | |||||||||||| ||||||||||||
Sbjct: 987333 tgaccacggtcccgttcatgacttgcacgctcgtaatctctctcacggtccctgcctctc 987392

                                
Query: 481    tcacggtgacgatcatga 498
              ||||| || |||||||||
Sbjct: 987393 tcacgatggcgatcatga 987410



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10,
              complete sequence
          Length = 22685906

 Score =  137 bits (69), Expect = 4e-29
 Identities = 137/158 (86%), Gaps = 4/158 (2%)
 Strand = Plus / Plus

                                                                          
Query: 109    aaaacttactgcagnaatcaagcttcagtcttt-tgctcttctgctgcttggtgatactg 167
              |||||||||||||| ||||||  ||||||  || ||||| || || ||||||||||||||
Sbjct: 987068 aaaacttactgcagcaatcaaatttcagttattgtgctcatcagcagcttggtgatactg 987127

                                                                          
Query: 168    gtagtcaccttcctcgtatgcctcaccttcctcagggccttcaggttctgtgttg---gg 224
              |||||||||||| || |||||||| || || ||||||||||||||||||||||||   ||
Sbjct: 987128 gtagtcaccttcatcatatgcctcgccctcttcagggccttcaggttctgtgttgttagg 987187

                                                    
Query: 225    ttgtgcctgatagtactcatgctcatgtctctttgagc 262
              |||   ||||||||||||||||||||||| ||||||||
Sbjct: 987188 ttgcatctgatagtactcatgctcatgtcgctttgagc 987225



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 67/78 (85%)
 Strand = Plus / Plus

                                                                          
Query: 421    tgaccgcggtcacgttcgtaactngcacgcccatcatctctctcacgatccctgcctctc 480
              ||||| ||||| ||||| | ||| |||||| | | |||||||||||| ||||||||||||
Sbjct: 987333 tgaccacggtcccgttcatgacttgcacgctcgtaatctctctcacggtccctgcctctc 987392

                                
Query: 481    tcacggtgacgatcatga 498
              ||||| || |||||||||
Sbjct: 987393 tcacgatggcgatcatga 987410



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  137 bits (69), Expect = 4e-29
 Identities = 137/158 (86%), Gaps = 4/158 (2%)
 Strand = Plus / Plus

                                                                          
Query: 109    aaaacttactgcagnaatcaagcttcagtcttt-tgctcttctgctgcttggtgatactg 167
              |||||||||||||| ||||||  ||||||  || ||||| || || ||||||||||||||
Sbjct: 987065 aaaacttactgcagcaatcaaatttcagttattgtgctcatcagcagcttggtgatactg 987124

                                                                          
Query: 168    gtagtcaccttcctcgtatgcctcaccttcctcagggccttcaggttctgtgttg---gg 224
              |||||||||||| || |||||||| || || ||||||||||||||||||||||||   ||
Sbjct: 987125 gtagtcaccttcatcatatgcctcgccctcttcagggccttcaggttctgtgttgttagg 987184

                                                    
Query: 225    ttgtgcctgatagtactcatgctcatgtctctttgagc 262
              |||   ||||||||||||||||||||||| ||||||||
Sbjct: 987185 ttgcatctgatagtactcatgctcatgtcgctttgagc 987222



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 67/78 (85%)
 Strand = Plus / Plus

                                                                          
Query: 421    tgaccgcggtcacgttcgtaactngcacgcccatcatctctctcacgatccctgcctctc 480
              ||||| ||||| ||||| | ||| |||||| | | |||||||||||| ||||||||||||
Sbjct: 987330 tgaccacggtcccgttcatgacttgcacgctcgtaatctctctcacggtccctgcctctc 987389

                                
Query: 481    tcacggtgacgatcatga 498
              ||||| || |||||||||
Sbjct: 987390 tcacgatggcgatcatga 987407



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>ref|NM_194601.1| Oryza sativa (japonica cultivar-group) putative U1 small nuclear
            ribonucleoprotein (OSJNBa0092N12.2), mRNA
          Length = 1476

 Score =  123 bits (62), Expect = 7e-25
 Identities = 100/112 (89%), Gaps = 3/112 (2%)
 Strand = Plus / Minus

                                                                        
Query: 154  gcttggtgatactggtagtcaccttcctcgtatgcctcaccttcctcagggccttcaggt 213
            |||||||||||||||||||||||||| || |||||||| || || |||||||||||||||
Sbjct: 1454 gcttggtgatactggtagtcaccttcatcatatgcctcgccctcttcagggccttcaggt 1395

                                                                
Query: 214  tctgtgttg---ggttgtgcctgatagtactcatgctcatgtctctttgagc 262
            |||||||||   |||||   ||||||||||||||||||||||| ||||||||
Sbjct: 1394 tctgtgttgttaggttgcatctgatagtactcatgctcatgtcgctttgagc 1343



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                        
Query: 421  tgaccgcggtcacgttcgtaactngcacgcccatcatctctctcacgatccctgcctctc 480
            ||||| ||||| ||||| | ||| |||||| | | |||||||||||| ||||||||||||
Sbjct: 1235 tgaccacggtcccgttcatgacttgcacgctcgtaatctctctcacggtccctgcctctc 1176

                              
Query: 481  tcacggtgacgatcatga 498
            ||||| || |||||||||
Sbjct: 1175 tcacgatggcgatcatga 1158



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>gb|DQ377064.1| Oryza sativa (japonica cultivar-group) U1 small nuclear
            ribonucleoprotein 70K splice variant 2 mRNA, complete
            cds, alternatively spliced
          Length = 3284

 Score =  123 bits (62), Expect = 7e-25
 Identities = 100/112 (89%), Gaps = 3/112 (2%)
 Strand = Plus / Minus

                                                                        
Query: 154  gcttggtgatactggtagtcaccttcctcgtatgcctcaccttcctcagggccttcaggt 213
            |||||||||||||||||||||||||| || |||||||| || || |||||||||||||||
Sbjct: 2924 gcttggtgatactggtagtcaccttcatcatatgcctcgccctcttcagggccttcaggt 2865

                                                                
Query: 214  tctgtgttg---ggttgtgcctgatagtactcatgctcatgtctctttgagc 262
            |||||||||   |||||   ||||||||||||||||||||||| ||||||||
Sbjct: 2864 tctgtgttgttaggttgcatctgatagtactcatgctcatgtcgctttgagc 2813



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                        
Query: 421  tgaccgcggtcacgttcgtaactngcacgcccatcatctctctcacgatccctgcctctc 480
            ||||| ||||| ||||| | ||| |||||| | | |||||||||||| ||||||||||||
Sbjct: 2705 tgaccacggtcccgttcatgacttgcacgctcgtaatctctctcacggtccctgcctctc 2646

                              
Query: 481  tcacggtgacgatcatga 498
            ||||| || |||||||||
Sbjct: 2645 tcacgatggcgatcatga 2628



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>gb|DQ377063.1| Oryza sativa (japonica cultivar-group) U1 small nuclear
            ribonucleoprotein 70K splice variant 1 mRNA, complete
            cds, alternatively spliced
          Length = 3443

 Score =  123 bits (62), Expect = 7e-25
 Identities = 100/112 (89%), Gaps = 3/112 (2%)
 Strand = Plus / Minus

                                                                        
Query: 154  gcttggtgatactggtagtcaccttcctcgtatgcctcaccttcctcagggccttcaggt 213
            |||||||||||||||||||||||||| || |||||||| || || |||||||||||||||
Sbjct: 3083 gcttggtgatactggtagtcaccttcatcatatgcctcgccctcttcagggccttcaggt 3024

                                                                
Query: 214  tctgtgttg---ggttgtgcctgatagtactcatgctcatgtctctttgagc 262
            |||||||||   |||||   ||||||||||||||||||||||| ||||||||
Sbjct: 3023 tctgtgttgttaggttgcatctgatagtactcatgctcatgtcgctttgagc 2972



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                        
Query: 421  tgaccgcggtcacgttcgtaactngcacgcccatcatctctctcacgatccctgcctctc 480
            ||||| ||||| ||||| | ||| |||||| | | |||||||||||| ||||||||||||
Sbjct: 2864 tgaccacggtcccgttcatgacttgcacgctcgtaatctctctcacggtccctgcctctc 2805

                              
Query: 481  tcacggtgacgatcatga 498
            ||||| || |||||||||
Sbjct: 2804 tcacgatggcgatcatga 2787



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>gb|DQ377062.1| Oryza sativa (japonica cultivar-group) U1 small nuclear
            ribonucleoprotein 70K mRNA, complete cds, alternatively
            spliced
          Length = 1815

 Score =  123 bits (62), Expect = 7e-25
 Identities = 100/112 (89%), Gaps = 3/112 (2%)
 Strand = Plus / Minus

                                                                        
Query: 154  gcttggtgatactggtagtcaccttcctcgtatgcctcaccttcctcagggccttcaggt 213
            |||||||||||||||||||||||||| || |||||||| || || |||||||||||||||
Sbjct: 1455 gcttggtgatactggtagtcaccttcatcatatgcctcgccctcttcagggccttcaggt 1396

                                                                
Query: 214  tctgtgttg---ggttgtgcctgatagtactcatgctcatgtctctttgagc 262
            |||||||||   |||||   ||||||||||||||||||||||| ||||||||
Sbjct: 1395 tctgtgttgttaggttgcatctgatagtactcatgctcatgtcgctttgagc 1344



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                        
Query: 421  tgaccgcggtcacgttcgtaactngcacgcccatcatctctctcacgatccctgcctctc 480
            ||||| ||||| ||||| | ||| |||||| | | |||||||||||| ||||||||||||
Sbjct: 1236 tgaccacggtcccgttcatgacttgcacgctcgtaatctctctcacggtccctgcctctc 1177

                              
Query: 481  tcacggtgacgatcatga 498
            ||||| || |||||||||
Sbjct: 1176 tcacgatggcgatcatga 1159



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>dbj|AK100686.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023113P16, full
            insert sequence
          Length = 3436

 Score =  123 bits (62), Expect = 7e-25
 Identities = 100/112 (89%), Gaps = 3/112 (2%)
 Strand = Plus / Minus

                                                                        
Query: 154  gcttggtgatactggtagtcaccttcctcgtatgcctcaccttcctcagggccttcaggt 213
            |||||||||||||||||||||||||| || |||||||| || || |||||||||||||||
Sbjct: 3094 gcttggtgatactggtagtcaccttcatcatatgcctcgccctcttcagggccttcaggt 3035

                                                                
Query: 214  tctgtgttg---ggttgtgcctgatagtactcatgctcatgtctctttgagc 262
            |||||||||   |||||   ||||||||||||||||||||||| ||||||||
Sbjct: 3034 tctgtgttgttaggttgcatctgatagtactcatgctcatgtcgctttgagc 2983



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                        
Query: 421  tgaccgcggtcacgttcgtaactngcacgcccatcatctctctcacgatccctgcctctc 480
            ||||| ||||| ||||| | ||| |||||| | | |||||||||||| ||||||||||||
Sbjct: 2875 tgaccacggtcccgttcatgacttgcacgctcgtaatctctctcacggtccctgcctctc 2816

                              
Query: 481  tcacggtgacgatcatga 498
            ||||| || |||||||||
Sbjct: 2815 tcacgatggcgatcatga 2798



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>dbj|AK059504.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-A09, full
            insert sequence
          Length = 1796

 Score =  123 bits (62), Expect = 7e-25
 Identities = 100/112 (89%), Gaps = 3/112 (2%)
 Strand = Plus / Minus

                                                                        
Query: 154  gcttggtgatactggtagtcaccttcctcgtatgcctcaccttcctcagggccttcaggt 213
            |||||||||||||||||||||||||| || |||||||| || || |||||||||||||||
Sbjct: 1454 gcttggtgatactggtagtcaccttcatcatatgcctcgccctcttcagggccttcaggt 1395

                                                                
Query: 214  tctgtgttg---ggttgtgcctgatagtactcatgctcatgtctctttgagc 262
            |||||||||   |||||   ||||||||||||||||||||||| ||||||||
Sbjct: 1394 tctgtgttgttaggttgcatctgatagtactcatgctcatgtcgctttgagc 1343



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                        
Query: 421  tgaccgcggtcacgttcgtaactngcacgcccatcatctctctcacgatccctgcctctc 480
            ||||| ||||| ||||| | ||| |||||| | | |||||||||||| ||||||||||||
Sbjct: 1235 tgaccacggtcccgttcatgacttgcacgctcgtaatctctctcacggtccctgcctctc 1176

                              
Query: 481  tcacggtgacgatcatga 498
            ||||| || |||||||||
Sbjct: 1175 tcacgatggcgatcatga 1158



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>dbj|AK121007.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023046L24, full
            insert sequence
          Length = 1798

 Score =  115 bits (58), Expect = 2e-22
 Identities = 99/112 (88%), Gaps = 3/112 (2%)
 Strand = Plus / Minus

                                                                        
Query: 154  gcttggtgatactggtagtcaccttcctcgtatgcctcaccttcctcagggccttcaggt 213
            |||||||||||||||||||||||| | || |||||||| || || |||||||||||||||
Sbjct: 1455 gcttggtgatactggtagtcacctccatcatatgcctcgccctcttcagggccttcaggt 1396

                                                                
Query: 214  tctgtgttg---ggttgtgcctgatagtactcatgctcatgtctctttgagc 262
            |||||||||   |||||   ||||||||||||||||||||||| ||||||||
Sbjct: 1395 tctgtgttgttaggttgcatctgatagtactcatgctcatgtcgctttgagc 1344



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                        
Query: 421  tgaccgcggtcacgttcgtaactngcacgcccatcatctctctcacgatccctgcctctc 480
            ||||| ||||| ||||| | ||| |||||| | | |||||||||||| ||||||||||||
Sbjct: 1236 tgaccacggtcccgttcatgacttgcacgctcgtaatctctctcacggtccctgcctctc 1177

                              
Query: 481  tcacggtgacgatcatga 498
            ||||| || |||||||||
Sbjct: 1176 tcacgatggcgatcatga 1159



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>gb|AY627768.1| Zea mays U1 snRNP mRNA, complete cds; alternatively spliced
          Length = 3299

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 50/52 (96%)
 Strand = Plus / Minus

                                                                
Query: 158  ggtgatactggtagtcaccttcctcgtatgcctcaccttcctcagggccttc 209
            |||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 3148 ggtgatactggtagtcgccttcctcatatgcctcaccttcctcagggccttc 3097



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                          
Query: 464  cacgatccctgcctctctcacggtgacgatcatgagagagaccacg 509
            |||| ||||||||||||||||| || |||||||||||| |||||||
Sbjct: 2800 cacggtccctgcctctctcacgatggcgatcatgagagcgaccacg 2755



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>gb|AY627767.1| Zea mays U1 snRNP mRNA, complete cds; alternatively spliced
          Length = 3463

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 50/52 (96%)
 Strand = Plus / Minus

                                                                
Query: 158  ggtgatactggtagtcaccttcctcgtatgcctcaccttcctcagggccttc 209
            |||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 3312 ggtgatactggtagtcgccttcctcatatgcctcaccttcctcagggccttc 3261



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                          
Query: 464  cacgatccctgcctctctcacggtgacgatcatgagagagaccacg 509
            |||| ||||||||||||||||| || |||||||||||| |||||||
Sbjct: 2964 cacggtccctgcctctctcacgatggcgatcatgagagcgaccacg 2919



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>gb|AY627766.1| Zea mays U1 snRNP mRNA, complete cds; alternatively spliced
          Length = 1647

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 50/52 (96%)
 Strand = Plus / Minus

                                                                
Query: 158  ggtgatactggtagtcaccttcctcgtatgcctcaccttcctcagggccttc 209
            |||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 1496 ggtgatactggtagtcgccttcctcatatgcctcaccttcctcagggccttc 1445



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                          
Query: 464  cacgatccctgcctctctcacggtgacgatcatgagagagaccacg 509
            |||| ||||||||||||||||| || |||||||||||| |||||||
Sbjct: 1148 cacggtccctgcctctctcacgatggcgatcatgagagcgaccacg 1103



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>gb|AY627765.1| Zea mays U1 snRNP gene, complete cds; alternatively spliced
          Length = 5550

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 50/52 (96%)
 Strand = Plus / Minus

                                                                
Query: 158  ggtgatactggtagtcaccttcctcgtatgcctcaccttcctcagggccttc 209
            |||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 4751 ggtgatactggtagtcgccttcctcatatgcctcaccttcctcagggccttc 4700



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                          
Query: 464  cacgatccctgcctctctcacggtgacgatcatgagagagaccacg 509
            |||| ||||||||||||||||| || |||||||||||| |||||||
Sbjct: 4403 cacggtccctgcctctctcacgatggcgatcatgagagcgaccacg 4358



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>gb|AY108570.1| Zea mays PCO063456 mRNA sequence
          Length = 1603

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 50/52 (96%)
 Strand = Plus / Minus

                                                                
Query: 158  ggtgatactggtagtcaccttcctcgtatgcctcaccttcctcagggccttc 209
            |||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 1214 ggtgatactggtagtcgccttcctcatatgcctcaccttcctcagggccttc 1163



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                         
Query: 464 cacgatccctgcctctctcacggtgacgatcatgagagagaccacg 509
           |||| ||||||||||||||||| || |||||||||||| |||||||
Sbjct: 866 cacggtccctgcctctctcacgatggcgatcatgagagcgaccacg 821



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>gb|AC182706.2| Populus trichocarpa clone Pop1-79P19, complete sequence
          Length = 102226

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 450   cccatcatctctctcacgatccc 472
             |||||||||||||||||||||||
Sbjct: 47648 cccatcatctctctcacgatccc 47626



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>gb|AC146428.3| Pan troglodytes BAC clone RP43-22M18 from 7, complete sequence
          Length = 194995

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 393   attgtattcagcatccctatc 413
             |||||||||||||||||||||
Sbjct: 23819 attgtattcagcatccctatc 23839



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>gb|AC095039.3| Homo sapiens BAC clone RP11-12G8 from 7, complete sequence
          Length = 70416

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 393   attgtattcagcatccctatc 413
             |||||||||||||||||||||
Sbjct: 60774 attgtattcagcatccctatc 60754



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>emb|AL031589.10|HS11O7 Human DNA sequence from clone RP6-11O7 on chromosome 22q13.1-13.2,
             complete sequence
          Length = 115932

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 339   agagccataatgcttcccata 359
             |||||||||||||||||||||
Sbjct: 81761 agagccataatgcttcccata 81741



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>emb|CR627316.1| Homo sapiens genomic DNA; cDNA DKFZp686O11128 (from clone
            DKFZp686O11128)
          Length = 4350

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 339  agagccataatgcttcccata 359
            |||||||||||||||||||||
Sbjct: 2627 agagccataatgcttcccata 2607



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>ref|XM_482855.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1787

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 271 tcatggccatgcccatgccc 290
           ||||||||||||||||||||
Sbjct: 341 tcatggccatgcccatgccc 322



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>ref|XM_507589.1| PREDICTED Oryza sativa (japonica cultivar-group), P0104B02.41 mRNA
          Length = 1972

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 271 tcatggccatgcccatgccc 290
           ||||||||||||||||||||
Sbjct: 344 tcatggccatgcccatgccc 325



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>ref|XM_507265.2| PREDICTED Oryza sativa (japonica cultivar-group), P0104B02.41 mRNA
          Length = 2555

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 271 tcatggccatgcccatgccc 290
           ||||||||||||||||||||
Sbjct: 345 tcatggccatgcccatgccc 326



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>gb|AC091458.5| Mus musculus chromosome 12, clone RP23-68M8, complete sequence
          Length = 289751

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 129  agcttcagtcttttgctcttctgc 152
            |||| |||||||||||||||||||
Sbjct: 5837 agctccagtcttttgctcttctgc 5860



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>ref|XM_841434.1| Trypanosoma brucei TREU927 hypothetical protein (Tb927.1.4950)
           partial mRNA
          Length = 252

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 510 atccttctccctatcgtgat 529
           ||||||||||||||||||||
Sbjct: 53  atccttctccctatcgtgat 72



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>emb|X14112.1|HE1CG Human herpesvirus 1 complete genome
          Length = 152261

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 262   ctttcagtttcatggccatg 281
             ||||||||||||||||||||
Sbjct: 69785 ctttcagtttcatggccatg 69804



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>gb|AC116596.3| Mus musculus BAC clone RP24-335P21 from chromosome 15, complete
             sequence
          Length = 165103

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 371   tcctgtcatgctttggctca 390
             ||||||||||||||||||||
Sbjct: 41674 tcctgtcatgctttggctca 41655



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>dbj|AB252867.1| Human herpesvirus 1 UL34 gene for virion protein, complete cds
          Length = 828

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 262 ctttcagtttcatggccatg 281
           ||||||||||||||||||||
Sbjct: 153 ctttcagtttcatggccatg 172



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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 479     tctcacggtgacgatcatga 498
               ||||||||||||||||||||
Sbjct: 3158914 tctcacggtgacgatcatga 3158895



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>dbj|AP009046.1| Hyphantria cunea nucleopolyhedrovirus genomic DNA, complete genome
          Length = 132959

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 425    cgcggtcacgttcgtaactngca 447
              ||||||||||||||||||| |||
Sbjct: 116549 cgcggtcacgttcgtaacttgca 116571



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 271      tcatggccatgcccatgccc 290
                ||||||||||||||||||||
Sbjct: 22987384 tcatggccatgcccatgccc 22987403



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>gb|AC108938.3| Homo sapiens BAC clone RP11-701A10 from 2, complete sequence
          Length = 175222

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 319   ttgtgttgctcatgctggtt 338
             ||||||||||||||||||||
Sbjct: 71056 ttgtgttgctcatgctggtt 71075



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>gb|AE009499.1| Brucella melitensis 16M chromosome I, section 56 of 195 of the
            complete sequence
          Length = 10455

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 264  ttcagtttcatggccatgcc 283
            ||||||||||||||||||||
Sbjct: 3734 ttcagtttcatggccatgcc 3715



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>gb|AC155299.2| Mus musculus BAC clone RP24-229D17 from chromosome 15, complete
             sequence
          Length = 198559

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 371   tcctgtcatgctttggctca 390
             ||||||||||||||||||||
Sbjct: 13371 tcctgtcatgctttggctca 13390



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>gb|AC013271.4| Homo sapiens BAC clone RP11-385J6 from 2, complete sequence
          Length = 155702

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 319  ttgtgttgctcatgctggtt 338
            ||||||||||||||||||||
Sbjct: 9527 ttgtgttgctcatgctggtt 9546



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>gb|AC112229.4| Homo sapiens BAC clone RP13-1039J1 from 2, complete sequence
          Length = 154279

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 319   ttgtgttgctcatgctggtt 338
             ||||||||||||||||||||
Sbjct: 17560 ttgtgttgctcatgctggtt 17541



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>dbj|AP006461.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0104B02
          Length = 169588

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 271    tcatggccatgcccatgccc 290
              ||||||||||||||||||||
Sbjct: 161222 tcatggccatgcccatgccc 161241



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>dbj|AP004585.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0470B03
          Length = 163371

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 271   tcatggccatgcccatgccc 290
             ||||||||||||||||||||
Sbjct: 47112 tcatggccatgcccatgccc 47131



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>ref|XM_557151.1| Anopheles gambiae str. PEST ENSANGP00000028277 (ENSANGG00000010999),
            partial mRNA
          Length = 1614

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 133  tcagtcttttgctcttctgc 152
            ||||||||||||||||||||
Sbjct: 1565 tcagtcttttgctcttctgc 1546



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>ref|XM_316511.2| Anopheles gambiae str. PEST ENSANGP00000013488 (ENSANGG00000010999),
            partial mRNA
          Length = 2526

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 133  tcagtcttttgctcttctgc 152
            ||||||||||||||||||||
Sbjct: 2219 tcagtcttttgctcttctgc 2200



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>dbj|AK105607.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-B01, full
           insert sequence
          Length = 1786

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 271 tcatggccatgcccatgccc 290
           ||||||||||||||||||||
Sbjct: 341 tcatggccatgcccatgccc 322



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>dbj|AK102279.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033089E10, full
           insert sequence
          Length = 1972

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 271 tcatggccatgcccatgccc 290
           ||||||||||||||||||||
Sbjct: 344 tcatggccatgcccatgccc 325



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>dbj|AK070501.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054A11, full
           insert sequence
          Length = 2555

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 271 tcatggccatgcccatgccc 290
           ||||||||||||||||||||
Sbjct: 345 tcatggccatgcccatgccc 326



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>emb|BX908754.8| Zebrafish DNA sequence from clone DKEY-196D8 in linkage group 18,
             complete sequence
          Length = 94961

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 319   ttgtgttgctcatgctggtt 338
             ||||||||||||||||||||
Sbjct: 14634 ttgtgttgctcatgctggtt 14615



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>emb|AL591207.15| Mouse DNA sequence from clone RP23-392O3 on chromosome 12, complete
              sequence
          Length = 211056

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 129    agcttcagtcttttgctcttctgc 152
              |||| |||||||||||||||||||
Sbjct: 101564 agctccagtcttttgctcttctgc 101541


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,668,374
Number of Sequences: 3902068
Number of extensions: 4668374
Number of successful extensions: 115815
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 115549
Number of HSP's gapped (non-prelim): 251
length of query: 573
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 550
effective length of database: 17,143,297,704
effective search space: 9428813737200
effective search space used: 9428813737200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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