ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd19g09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY033628.1| Hordeum vulgare subsp. vulgare horcolin mRNA, com... 1027 0.0
2gb|AY770690.1| Hordeum vulgare horcolin gene, complete cds 743 0.0
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 2.2
4gb|AC084022.10| Oryza sativa chromosome 3 BAC OSJNBa0011H24 geno... 42 2.2
5gb|AC116585.3| Mus musculus BAC clone RP23-358A16 from chromosom... 42 2.2
6gb|BC040994.1| Homo sapiens cDNA clone IMAGE:5272574 42 2.2
7gb|AC007437.16| Homo sapiens 12q22 BAC RPCI11-541G9 (Roswell Par... 42 2.2
8gb|AC007656.2| Homo sapiens 12q22 BAC RPCI11-534P6 (Rowswell Par... 42 2.2
9gb|AC013604.9|AC013604 Homo sapiens, clone RP11-10E14, complete ... 42 2.2
10dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
11emb|BX001055.11| Zebrafish DNA sequence from clone CH211-87M5 in... 42 2.2
12gb|AC122883.5| Mus musculus BAC clone RP23-83N21 from chromosome... 42 2.2
13emb|AL627098.30| Mouse DNA sequence from clone RP23-108K17 on ch... 42 2.2
14gb|AC132258.3| Mus musculus BAC clone RP24-361F13 from 1, comple... 42 2.2
15gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome 40 8.9
16gb|AC105981.10| Mus musculus chromosome 8, clone RP24-210I22, co... 40 8.9
17gb|AC167021.3| Mus musculus BAC clone RP23-152D8 from chromosome... 40 8.9
18gb|AC107702.12| Mus musculus chromosome 3, clone RP23-391G19, co... 40 8.9
19gb|AC115933.7| Mus musculus chromosome 3, clone RP24-539I8, comp... 40 8.9
20gb|AC110168.11| Mus musculus chromosome 17, clone RP23-312F5, co... 40 8.9
21gb|AC155298.2| Mus musculus BAC clone RP24-245L7 from chromosome... 40 8.9
22gb|AC107834.13| Mus musculus chromosome 1, clone RP23-251L12, co... 40 8.9
23gb|AC115954.11| Mus musculus chromosome 16, clone RP24-62P21, co... 40 8.9
24gb|AC132429.2| Mus musculus BAC clone RP23-203O20 from chromosom... 40 8.9
25gb|AC002550.1|HUAC002550 Human Chromosome 16 BAC clone CIT987SK-... 40 8.9
26gb|AC122467.3| Mus musculus BAC clone RP24-311K2 from chromosome... 40 8.9
27gb|AC117242.3| Mus musculus BAC clone RP24-151P1 from chromosome... 40 8.9
28gb|AC114915.3| Mus musculus BAC clone RP23-54K21 from 2, complet... 40 8.9
29gb|AC122879.3| Mus musculus BAC clone RP23-76C10 from 1, complet... 40 8.9
30gb|AC114009.4| Mus musculus BAC clone RP23-385K2 from 8, complet... 40 8.9
31gb|AC107670.10| Mus musculus chromosome 14, clone RP23-54K15, co... 40 8.9
32gb|AC116484.12| Mus musculus chromosome 16, clone RP23-425F12, c... 40 8.9
33emb|AL645730.10| Human DNA sequence from clone RP11-93G23 on chr... 40 8.9
34emb|AL512430.14| Human DNA sequence from clone RP11-346C16 on ch... 40 8.9
35emb|AL356953.17| Human DNA sequence from clone RP11-572A16 on ch... 40 8.9
36emb|AL049692.13|HSDJ74J1 Human DNA sequence from clone RP1-74J1 ... 40 8.9
37gb|AC153013.3| Mus musculus BAC clone RP23-273N8 from chromosome... 40 8.9
38emb|BX547992.4| Zebrafish DNA sequence from clone DKEY-225I9 in ... 40 8.9
39gb|AY245105.1| Homo sapiens Wilms tumor 1 (WT1) gene, complete cds 40 8.9
40gb|AC127287.4| Mus musculus BAC clone RP23-345G7 from chromosome... 40 8.9
41emb|AL606494.4| Mouse DNA sequence from clone RP23-198B6 on chro... 40 8.9
42emb|AL772281.7| Mouse DNA sequence from clone RP23-138O20 on chr... 40 8.9
43gb|AC002464.1|AC002464 Human BAC clone CTA-331P3, complete sequence 40 8.9
44gb|AC127305.5| Mus musculus BAC clone RP23-289H23 from 3, comple... 40 8.9
45emb|CR936503.1| Lactobacillus sakei strain 23K complete genome 40 8.9
46gb|AC100746.4| Mus musculus chromosome 5, clone RP24-399G21, com... 40 8.9
47dbj|AP006418.1| Lotus japonicus genomic DNA, chromosome 6, clone... 40 8.9
48emb|AL844844.8| Mouse DNA sequence from clone RP23-103D7 on chro... 40 8.9
49gb|AC155239.2| Mus musculus BAC clone RP24-462F23 from chromosom... 40 8.9
50gb|AC163216.10| Mus musculus chromosome 1, clone RP23-69G5, comp... 40 8.9 
>gb|AY033628.1| Hordeum vulgare subsp. vulgare horcolin mRNA, complete cds
          Length = 665

 Score = 1027 bits (518), Expect = 0.0
 Identities = 524/526 (99%)
 Strand = Plus / Minus

                                                                       
Query: 126 gcagcgtcacacataatcacacacatatgctaaagtgccatgtaaggcacttcacaagtt 185
           |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 gcagcgtcacacattatcccacacatatgctaaagtgccatgtaaggcacttcacaagtt 606

                                                                       
Query: 186 tatttattctagcaagcagacgctgccggtagtactacgccacctccttcctccagagga 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tatttattctagcaagcagacgctgccggtagtactacgccacctccttcctccagagga 546

                                                                       
Query: 246 gaggtggccggccgatatcaaccaaccattcatggagtaatgtagaacccaatcgcgtcc 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaggtggccggccgatatcaaccaaccattcatggagtaatgtagaacccaatcgcgtcc 486

                                                                       
Query: 306 aggaaagcaccagcccgtccaaagaagccggcgatcttacccccgtcaagcaccgggacg 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aggaaagcaccagcccgtccaaagaagccggcgatcttacccccgtcaagcaccgggacg 426

                                                                       
Query: 366 cggaatggaattccggtacctgagccgtatgtcctggtaacccccttggaggtgataatt 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 cggaatggaattccggtacctgagccgtatgtcctggtaacccccttggaggtgataatt 366

                                                                       
Query: 426 ttaagagacgtgacgatgtcgtcggtcccaaatttacccactgtcccggagatttcggtc 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ttaagagacgtgacgatgtcgtcggtcccaaatttacccactgtcccggagatttcggtc 306

                                                                       
Query: 486 acgtagttcgtagcgtctagattaatcgtatcttctgtgccgccagtgccaccccacttg 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 acgtagttcgtagcgtctagattaatcgtatcttctgtgccgccagtgccaccccacttg 246

                                                                       
Query: 546 atgccggaagagtgttgaacgttatcggtgcccacataggtgaatgcaatagcgtcaacg 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 atgccggaagagtgttgaacgttatcggtgcccacataggtgaatgcaatagcgtcaacg 186

                                                         
Query: 606 atagctccgctactgacggtcatactaaccatacggatgggctttg 651
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 atagctccgctactgacggtcatactaaccatacggatgggctttg 140
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>gb|AY770690.1| Hordeum vulgare horcolin gene, complete cds
          Length = 1338

 Score =  743 bits (375), Expect = 0.0
 Identities = 384/387 (99%)
 Strand = Plus / Minus

                                                                        
Query: 126  gcagcgtcacacataatcacacacatatgctaaagtgccatgtaaggcacttcacaagtt 185
            |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1338 gcagcgtcacacattatcccacacatatgctaaagtgccatgtaaggcacttcacaagtt 1279

                                                                        
Query: 186  tatttattctagcaagcagacgctgccggtagtactacgccacctccttcctccagagga 245
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1278 tatttattctagcaagcagacgctgccggtagtactacgccacctccttcttccagagga 1219

                                                                        
Query: 246  gaggtggccggccgatatcaaccaaccattcatggagtaatgtagaacccaatcgcgtcc 305
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1218 gaggtggccggccgatatcaaccaaccattcatggagtaatgtagaacccaatcgcgtcc 1159

                                                                        
Query: 306  aggaaagcaccagcccgtccaaagaagccggcgatcttacccccgtcaagcaccgggacg 365
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1158 aggaaagcaccagcccgtccaaagaagccggcgatcttacccccgtcaagcaccgggacg 1099

                                                                        
Query: 366  cggaatggaattccggtacctgagccgtatgtcctggtaacccccttggaggtgataatt 425
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1098 cggaatggaattccggtacctgagccgtatgtcctggtaacccccttggaggtgataatt 1039

                                                                        
Query: 426  ttaagagacgtgacgatgtcgtcggtcccaaatttacccactgtcccggagatttcggtc 485
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1038 ttaagagacgtgacgatgtcgtcggtcccaaatttacccactgtcccggagatttcggtc 979

                                       
Query: 486  acgtagttcgtagcgtctagattaatc 512
            |||||||||||||||||||||||||||
Sbjct: 978  acgtagttcgtagcgtctagattaatc 952



 Score =  278 bits (140), Expect = 2e-71
 Identities = 140/140 (100%)
 Strand = Plus / Minus

                                                                       
Query: 512 cgtatcttctgtgccgccagtgccaccccacttgatgccggaagagtgttgaacgttatc 571
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 cgtatcttctgtgccgccagtgccaccccacttgatgccggaagagtgttgaacgttatc 725

                                                                       
Query: 572 ggtgcccacataggtgaatgcaatagcgtcaacgatagctccgctactgacggtcatact 631
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 ggtgcccacataggtgaatgcaatagcgtcaacgatagctccgctactgacggtcatact 665

                               
Query: 632 aaccatacggatgggctttg 651
           ||||||||||||||||||||
Sbjct: 664 aaccatacggatgggctttg 645
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 239      cagaggagaggtggccggccg 259
                |||||||||||||||||||||
Sbjct: 14966991 cagaggagaggtggccggccg 14967011
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>gb|AC084022.10| Oryza sativa chromosome 3 BAC OSJNBa0011H24 genomic sequence, complete
             sequence
          Length = 137184

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 239   cagaggagaggtggccggccg 259
             |||||||||||||||||||||
Sbjct: 75771 cagaggagaggtggccggccg 75751
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>gb|AC116585.3| Mus musculus BAC clone RP23-358A16 from chromosome 3, complete sequence
          Length = 227492

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 235   cctccagaggagaggtggccg 255
             |||||||||||||||||||||
Sbjct: 75453 cctccagaggagaggtggccg 75473
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>gb|BC040994.1| Homo sapiens cDNA clone IMAGE:5272574
          Length = 4564

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 229  ctccttcctccagaggagagg 249
            |||||||||||||||||||||
Sbjct: 3953 ctccttcctccagaggagagg 3973
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>gb|AC007437.16| Homo sapiens 12q22 BAC RPCI11-541G9 (Roswell Park Cancer Institute
            Human BAC Library) complete sequence
          Length = 179854

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 229  ctccttcctccagaggagagg 249
            |||||||||||||||||||||
Sbjct: 3236 ctccttcctccagaggagagg 3216
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>gb|AC007656.2| Homo sapiens 12q22 BAC RPCI11-534P6 (Rowswell Park Cancer Institute Human
              BAC Library) complete sequence
          Length = 171236

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 229    ctccttcctccagaggagagg 249
              |||||||||||||||||||||
Sbjct: 147850 ctccttcctccagaggagagg 147830
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>gb|AC013604.9|AC013604 Homo sapiens, clone RP11-10E14, complete sequence
          Length = 167236

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 134   acacataatcacacacatatg 154
             |||||||||||||||||||||
Sbjct: 70663 acacataatcacacacatatg 70683
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 239      cagaggagaggtggccggccg 259
                |||||||||||||||||||||
Sbjct: 14961525 cagaggagaggtggccggccg 14961545
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>emb|BX001055.11| Zebrafish DNA sequence from clone CH211-87M5 in linkage group 9, complete
              sequence
          Length = 194418

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 133    cacacataatcacacacatat 153
              |||||||||||||||||||||
Sbjct: 182036 cacacataatcacacacatat 182016
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>gb|AC122883.5| Mus musculus BAC clone RP23-83N21 from chromosome 3, complete sequence
          Length = 230573

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 238    ccagaggagaggtggccggcc 258
              |||||||||||||||||||||
Sbjct: 137323 ccagaggagaggtggccggcc 137343
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>emb|AL627098.30| Mouse DNA sequence from clone RP23-108K17 on chromosome 4, complete
              sequence
          Length = 208131

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 133    cacacataatcacacacatat 153
              |||||||||||||||||||||
Sbjct: 102177 cacacataatcacacacatat 102197
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>gb|AC132258.3| Mus musculus BAC clone RP24-361F13 from 1, complete sequence
          Length = 130493

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 132   tcacacataatcacacacata 152
             |||||||||||||||||||||
Sbjct: 66801 tcacacataatcacacacata 66821
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>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 307     ggaaagcaccagcccgtcca 326
               ||||||||||||||||||||
Sbjct: 2644141 ggaaagcaccagcccgtcca 2644122
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>gb|AC105981.10| Mus musculus chromosome 8, clone RP24-210I22, complete sequence
          Length = 167656

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 79     acatatgatccacacacact 98
              ||||||||||||||||||||
Sbjct: 129631 acatatgatccacacacact 129612
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>gb|AC167021.3| Mus musculus BAC clone RP23-152D8 from chromosome 6, complete sequence
          Length = 222021

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 133    cacacataatcacacacata 152
              ||||||||||||||||||||
Sbjct: 187758 cacacataatcacacacata 187777
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>gb|AC107702.12| Mus musculus chromosome 3, clone RP23-391G19, complete sequence
          Length = 219296

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 235    cctccagaggagaggtggcc 254
              ||||||||||||||||||||
Sbjct: 142375 cctccagaggagaggtggcc 142394
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>gb|AC115933.7| Mus musculus chromosome 3, clone RP24-539I8, complete sequence
          Length = 187920

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 133   cacacataatcacacacata 152
             ||||||||||||||||||||
Sbjct: 87591 cacacataatcacacacata 87572
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>gb|AC110168.11| Mus musculus chromosome 17, clone RP23-312F5, complete sequence
          Length = 177747

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 133   cacacataatcacacacata 152
             ||||||||||||||||||||
Sbjct: 41430 cacacataatcacacacata 41449
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>gb|AC155298.2| Mus musculus BAC clone RP24-245L7 from chromosome 13, complete sequence
          Length = 178609

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 133   cacacataatcacacacata 152
             ||||||||||||||||||||
Sbjct: 12899 cacacataatcacacacata 12918
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>gb|AC107834.13| Mus musculus chromosome 1, clone RP23-251L12, complete sequence
          Length = 180525

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 235    cctccagaggagaggtggcc 254
              ||||||||||||||||||||
Sbjct: 101578 cctccagaggagaggtggcc 101559
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>gb|AC115954.11| Mus musculus chromosome 16, clone RP24-62P21, complete sequence
          Length = 205819

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 133   cacacataatcacacacata 152
             ||||||||||||||||||||
Sbjct: 47976 cacacataatcacacacata 47957
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>gb|AC132429.2| Mus musculus BAC clone RP23-203O20 from chromosome 1, complete sequence
          Length = 199083

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 235    cctccagaggagaggtggcc 254
              ||||||||||||||||||||
Sbjct: 112629 cctccagaggagaggtggcc 112610
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>gb|AC002550.1|HUAC002550 Human Chromosome 16 BAC clone CIT987SK-A-101F10, complete sequence
          Length = 86156

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 224   gccacctccttcctccagag 243
             ||||||||||||||||||||
Sbjct: 59990 gccacctccttcctccagag 60009
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>gb|AC122467.3| Mus musculus BAC clone RP24-311K2 from chromosome 6, complete sequence
          Length = 110480

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 133   cacacataatcacacacata 152
             ||||||||||||||||||||
Sbjct: 85934 cacacataatcacacacata 85953
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>gb|AC117242.3| Mus musculus BAC clone RP24-151P1 from chromosome 6, complete
            sequence
          Length = 209736

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 225  ccacctccttcctccagagg 244
            ||||||||||||||||||||
Sbjct: 9745 ccacctccttcctccagagg 9726
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>gb|AC114915.3| Mus musculus BAC clone RP23-54K21 from 2, complete sequence
          Length = 257013

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 235   cctccagaggagaggtggcc 254
             ||||||||||||||||||||
Sbjct: 28027 cctccagaggagaggtggcc 28046
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>gb|AC122879.3| Mus musculus BAC clone RP23-76C10 from 1, complete sequence
          Length = 250884

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 235   cctccagaggagaggtggcc 254
             ||||||||||||||||||||
Sbjct: 51440 cctccagaggagaggtggcc 51459
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>gb|AC114009.4| Mus musculus BAC clone RP23-385K2 from 8, complete sequence
          Length = 202089

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 139   taatcacacacatatgctaaagtg 162
             |||||||||||||||||| |||||
Sbjct: 59374 taatcacacacatatgctgaagtg 59397
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>gb|AC107670.10| Mus musculus chromosome 14, clone RP23-54K15, complete sequence
          Length = 202048

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 133   cacacataatcacacacatatgct 156
             |||||||| |||||||||||||||
Sbjct: 54510 cacacatactcacacacatatgct 54487
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>gb|AC116484.12| Mus musculus chromosome 16, clone RP23-425F12, complete sequence
          Length = 206793

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 133    cacacataatcacacacata 152
              ||||||||||||||||||||
Sbjct: 190953 cacacataatcacacacata 190934
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>emb|AL645730.10| Human DNA sequence from clone RP11-93G23 on chromosome 1 Contains the
             5' end of a the gene for a novel protein and a pseudogene
             similar to part of NADH dehydrogenase 2 (MTND2), complete
             sequence
          Length = 153702

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 230   tccttcctccagaggagagg 249
             ||||||||||||||||||||
Sbjct: 64874 tccttcctccagaggagagg 64893
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>emb|AL512430.14| Human DNA sequence from clone RP11-346C16 on chromosome 6 Contains the
             3' part of gene KIAA1028, a pseudogene similar to
             ribosomal protein S19 (RPS19), a pseudogene similar to
             protein phosphatases, a ribosomal protein S20 (RPS20)
             pseudogene and a CpG island, complete sequence
          Length = 189098

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 132   tcacacataatcacacacat 151
             ||||||||||||||||||||
Sbjct: 13186 tcacacataatcacacacat 13205
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>emb|AL356953.17| Human DNA sequence from clone RP11-572A16 on chromosome 1 Contains the
             3' end of a pseudogene similar to Mus musculus protein
             tyrosine phosphatase receptor type V Ptprv, the LGR6 gene
             for leucine-rich repeat-containing G protein-coupled
             receptor 6, the gene for a ubiquitin conjugating enzyme,
             the 5' end of the PPP1R12B gene for protein phosphatase 1
             regulatory (inhibitor) subunit 12B and four CpG islands,
             complete sequence
          Length = 177344

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 226   cacctccttcctccagagga 245
             ||||||||||||||||||||
Sbjct: 25151 cacctccttcctccagagga 25132
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>emb|AL049692.13|HSDJ74J1 Human DNA sequence from clone RP1-74J1 on chromosome 11p13 Contains a
             gene for Wilms' tumor associated protein, the WT1 (Wilms
             tumor 1) gene, ESTs, STSs, GSSs and CpG Islands, complete
             sequence
          Length = 127580

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 179   acaagtttatttattctagc 198
             ||||||||||||||||||||
Sbjct: 78642 acaagtttatttattctagc 78661
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>gb|AC153013.3| Mus musculus BAC clone RP23-273N8 from chromosome 8, complete sequence
          Length = 196609

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 139    taatcacacacatatgctaaagtg 162
              |||||||||||||||||| |||||
Sbjct: 172817 taatcacacacatatgctgaagtg 172840
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>emb|BX547992.4| Zebrafish DNA sequence from clone DKEY-225I9 in linkage group 3, complete
              sequence
          Length = 181320

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 451    tcccaaatttacccactgtc 470
              ||||||||||||||||||||
Sbjct: 143598 tcccaaatttacccactgtc 143579
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>gb|AY245105.1| Homo sapiens Wilms tumor 1 (WT1) gene, complete cds
          Length = 50678

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 179   acaagtttatttattctagc 198
             ||||||||||||||||||||
Sbjct: 26633 acaagtttatttattctagc 26652
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>gb|AC127287.4| Mus musculus BAC clone RP23-345G7 from chromosome 7, complete sequence
          Length = 209901

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 133    cacacataatcacacacatatgctaaag 160
              |||||| || ||||||||||||||||||
Sbjct: 154833 cacacacaaacacacacatatgctaaag 154860
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>emb|AL606494.4| Mouse DNA sequence from clone RP23-198B6 on chromosome 2, complete
              sequence
          Length = 196744

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 174    acttcacaagtttatttatt 193
              ||||||||||||||||||||
Sbjct: 122984 acttcacaagtttatttatt 122965
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>emb|AL772281.7| Mouse DNA sequence from clone RP23-138O20 on chromosome 4, complete
             sequence
          Length = 58409

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 236   ctccagaggagaggtggccg 255
             ||||||||||||||||||||
Sbjct: 50243 ctccagaggagaggtggccg 50224
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>gb|AC002464.1|AC002464 Human BAC clone CTA-331P3, complete sequence
          Length = 123805

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 132   tcacacataatcacacacat 151
             ||||||||||||||||||||
Sbjct: 29310 tcacacataatcacacacat 29291
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>gb|AC127305.5| Mus musculus BAC clone RP23-289H23 from 3, complete sequence
          Length = 211760

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 235   cctccagaggagaggtggcc 254
             ||||||||||||||||||||
Sbjct: 92172 cctccagaggagaggtggcc 92191
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>emb|CR936503.1| Lactobacillus sakei strain 23K complete genome
          Length = 1884661

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 566    gttatcggtgcccacataggtgaa 589
              ||||||||||||||| ||||||||
Sbjct: 951391 gttatcggtgcccacttaggtgaa 951414
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>gb|AC100746.4| Mus musculus chromosome 5, clone RP24-399G21, complete sequence
          Length = 157682

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 136   acataatcacacacatatgc 155
             ||||||||||||||||||||
Sbjct: 90416 acataatcacacacatatgc 90397
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>dbj|AP006418.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT23A02, TM0306,
             complete sequence
          Length = 62713

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 133   cacacataatcacacacata 152
             ||||||||||||||||||||
Sbjct: 52267 cacacataatcacacacata 52286
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>emb|AL844844.8| Mouse DNA sequence from clone RP23-103D7 on chromosome 2, complete
             sequence
          Length = 213953

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 235   cctccagaggagaggtggcc 254
             ||||||||||||||||||||
Sbjct: 82834 cctccagaggagaggtggcc 82815
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>gb|AC155239.2| Mus musculus BAC clone RP24-462F23 from chromosome 14, complete
             sequence
          Length = 170006

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 235   cctccagaggagaggtggcc 254
             ||||||||||||||||||||
Sbjct: 44758 cctccagaggagaggtggcc 44739
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>gb|AC163216.10| Mus musculus chromosome 1, clone RP23-69G5, complete sequence
          Length = 260188

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 235   cctccagaggagaggtggcc 254
             ||||||||||||||||||||
Sbjct: 37771 cctccagaggagaggtggcc 37752


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,451,539
Number of Sequences: 3902068
Number of extensions: 4451539
Number of successful extensions: 82687
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82520
Number of HSP's gapped (non-prelim): 167
length of query: 651
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 628
effective length of database: 17,143,297,704
effective search space: 10765990958112
effective search space used: 10765990958112
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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