ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd19g01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC116347.2| Homo sapiens chromosome 5 clone RP11-274E7, compl... 44 0.49
2gb|AC134821.2| Homo sapiens chromosome 5 clone RP11-995J21, comp... 44 0.49
3gb|AC140830.2| Homo sapiens chromosome 5 clone RP11-901K15, comp... 44 0.49
4gb|AC125137.3| Mus musculus BAC clone RP24-324K9 from chromosome... 40 7.7
5emb|CR848003.7| Zebrafish DNA sequence from clone DKEY-180K21 in... 40 7.7
6emb|AL441964.4| Human DNA sequence from clone RP11-151G12 on chr... 40 7.7
7emb|AL355003.10| Human DNA sequence from clone RP11-753M10 on ch... 40 7.7
8emb|AL353595.9| Human DNA sequence from clone RP11-81P8 on chrom... 40 7.7
9gb|AC125503.3| Oryctolagus cuniculus clone LB1-115H21, complete ... 40 7.7
10emb|AL353814.1|ATF26G5 Arabidopsis thaliana DNA chromosome 3, BA... 40 7.7
11emb|BX530069.10| Zebrafish DNA sequence from clone DKEY-22L17 in... 40 7.7
12gb|AF145049.1|AF145049 Streptomyces fradiae tylosin-biosynthetic... 40 7.7
13gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold 40 7.7
14gb|AC069164.11|AC069164 Homo sapiens chromosome 13 clone RP11-33... 40 7.7
15emb|BX510657.9| Zebrafish DNA sequence from clone CH211-142K18 i... 40 7.7
16gb|AF055922.1|AF055922 Streptomyces fradiae dipeptidil carboxype... 40 7.7
17emb|CR788257.9| Zebrafish DNA sequence from clone DKEY-244H24 in... 40 7.7 
>gb|AC116347.2| Homo sapiens chromosome 5 clone RP11-274E7, complete sequence
          Length = 132384

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 510    ctgaaactctggacagcataca 531
              ||||||||||||||||||||||
Sbjct: 114130 ctgaaactctggacagcataca 114151
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>gb|AC134821.2| Homo sapiens chromosome 5 clone RP11-995J21, complete sequence
          Length = 40499

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 510   ctgaaactctggacagcataca 531
             ||||||||||||||||||||||
Sbjct: 32294 ctgaaactctggacagcataca 32273
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>gb|AC140830.2| Homo sapiens chromosome 5 clone RP11-901K15, complete sequence
          Length = 168242

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 510    ctgaaactctggacagcataca 531
              ||||||||||||||||||||||
Sbjct: 142834 ctgaaactctggacagcataca 142855
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>gb|AC125137.3| Mus musculus BAC clone RP24-324K9 from chromosome 6, complete sequence
          Length = 170336

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 15    atttacacctgatccacaag 34
             ||||||||||||||||||||
Sbjct: 15090 atttacacctgatccacaag 15071
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>emb|CR848003.7| Zebrafish DNA sequence from clone DKEY-180K21 in linkage group 1,
             complete sequence
          Length = 53659

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     aacatttctatttacacctg 25
             ||||||||||||||||||||
Sbjct: 12894 aacatttctatttacacctg 12875
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>emb|AL441964.4| Human DNA sequence from clone RP11-151G12 on chromosome X Contains a
             mortality factor 4 like 1 (MORF4L1) pseudogene and a novel
             pseudogene, complete sequence
          Length = 92775

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 300   tgtagatacagaggccaaca 319
             ||||||||||||||||||||
Sbjct: 56487 tgtagatacagaggccaaca 56506
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>emb|AL355003.10| Human DNA sequence from clone RP11-753M10 on chromosome 13, complete
             sequence
          Length = 133309

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 261   ttcagcattccacaatgtat 280
             ||||||||||||||||||||
Sbjct: 86872 ttcagcattccacaatgtat 86891
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>emb|AL353595.9| Human DNA sequence from clone RP11-81P8 on chromosome 9, complete
             sequence
          Length = 167629

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 162   tttacagctttaccaattttgaat 185
             |||||| |||||||||||||||||
Sbjct: 20579 tttacatctttaccaattttgaat 20602
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>gb|AC125503.3| Oryctolagus cuniculus clone LB1-115H21, complete sequence
          Length = 176296

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    tctatttacacctgatccac 31
             ||||||||||||||||||||
Sbjct: 46846 tctatttacacctgatccac 46827
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>emb|AL353814.1|ATF26G5 Arabidopsis thaliana DNA chromosome 3, BAC clone F26G5
          Length = 102873

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 249   accatgccaagcttcagcattcca 272
             ||||||||||||||||| ||||||
Sbjct: 41050 accatgccaagcttcagaattcca 41073
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>emb|BX530069.10| Zebrafish DNA sequence from clone DKEY-22L17 in linkage group 10,
              complete sequence
          Length = 222308

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 160    attttacagctttaccaatt 179
              ||||||||||||||||||||
Sbjct: 167762 attttacagctttaccaatt 167743
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>gb|AF145049.1|AF145049 Streptomyces fradiae tylosin-biosynthetic regulatory gene cluster,
            complete sequence
          Length = 10467

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 382  gcggagaagtcgagccgcac 401
            ||||||||||||||||||||
Sbjct: 2982 gcggagaagtcgagccgcac 2963
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>gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold
          Length = 1889755

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 12      tctatttacacctgatccac 31
               ||||||||||||||||||||
Sbjct: 1476292 tctatttacacctgatccac 1476273
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>gb|AC069164.11|AC069164 Homo sapiens chromosome 13 clone RP11-338F18, complete sequence
          Length = 169903

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 261    ttcagcattccacaatgtat 280
              ||||||||||||||||||||
Sbjct: 125439 ttcagcattccacaatgtat 125458
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>emb|BX510657.9| Zebrafish DNA sequence from clone CH211-142K18 in linkage group 20,
              complete sequence
          Length = 163967

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 271    cacaatgtatgtgaatggca 290
              ||||||||||||||||||||
Sbjct: 150362 cacaatgtatgtgaatggca 150381
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>gb|AF055922.1|AF055922 Streptomyces fradiae dipeptidil carboxypeptidase (ddcA), tylosin
             resistance protein (tlrB), glycosyltransferase (tylN),
             methyltransferase (tylE), 4-ketoreductase (tylD),
             ferredoxin (tylH2), cytochrome P450 (tylH1), macrocin
             O-methyltransferase (tylF), epimerase (tylJ), acyl-CoA
             oxydase (tylP), and butyrolactone receptor (tylQ) genes,
             complete cds
          Length = 12905

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 382   gcggagaagtcgagccgcac 401
             ||||||||||||||||||||
Sbjct: 12541 gcggagaagtcgagccgcac 12522
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>emb|CR788257.9| Zebrafish DNA sequence from clone DKEY-244H24 in linkage group 1,
            complete sequence
          Length = 198219

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 6    aacatttctatttacacctg 25
            ||||||||||||||||||||
Sbjct: 9127 aacatttctatttacacctg 9146


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,940,791
Number of Sequences: 3902068
Number of extensions: 4940791
Number of successful extensions: 179769
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 179723
Number of HSP's gapped (non-prelim): 46
length of query: 567
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 544
effective length of database: 17,143,297,704
effective search space: 9325953950976
effective search space used: 9325953950976
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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