ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd19f23 |
|---|---|
| Clone Library Name | barley_pub |
>PHYA4_AVESA (P06594) Phytochrome A type 4 (AP4)| Length = 1128 Score = 133 bits (334), Expect = 7e-31 Identities = 68/100 (68%), Positives = 74/100 (74%), Gaps = 1/100 (1%) Frame = -2 Query: 743 FDRSGKYTECLLSVNSRANEDGLITGVFCFIHIPSHXXXXXXXXXXXXXXXXLRRLKAFS 564 FDRSGKY ECLLS N + NE GLITGVFCFIH+ SH L+RLKAFS Sbjct: 841 FDRSGKYIECLLSANRKENEGGLITGVFCFIHVASHELQHALQVQQASEQTSLKRLKAFS 900 Query: 563 YMRHAINNPLSGMLYSRKALKNTDLNEEQMRLMN-GDVRH 447 YMRHAINNPLSGMLYSRKALKNTDLNEEQM+ ++ GD H Sbjct: 901 YMRHAINNPLSGMLYSRKALKNTDLNEEQMKQIHVGDNCH 940 Score = 59.7 bits (143), Expect = 9e-09 Identities = 34/52 (65%), Positives = 37/52 (71%) Frame = -2 Query: 530 GMLYSRKALKNTDLNEEQMRLMNGDVRHLREAGMSIFILTAELACAPTAMRQ 375 G+L SRK L RLMNGDVRHLREAG+S FILTAELA APTA+ Q Sbjct: 1087 GLLVSRKLL----------RLMNGDVRHLREAGVSTFILTAELASAPTAIGQ 1128
>PHYA3_AVESA (P06593) Phytochrome A type 3 (AP3)| Length = 1128 Score = 133 bits (334), Expect = 7e-31 Identities = 68/100 (68%), Positives = 74/100 (74%), Gaps = 1/100 (1%) Frame = -2 Query: 743 FDRSGKYTECLLSVNSRANEDGLITGVFCFIHIPSHXXXXXXXXXXXXXXXXLRRLKAFS 564 FDRSGKY ECLLS N + NE GLITGVFCFIH+ SH L+RLKAFS Sbjct: 841 FDRSGKYIECLLSANRKENEGGLITGVFCFIHVASHELQHALQVQQASEQTSLKRLKAFS 900 Query: 563 YMRHAINNPLSGMLYSRKALKNTDLNEEQMRLMN-GDVRH 447 YMRHAINNPLSGMLYSRKALKNTDLNEEQM+ ++ GD H Sbjct: 901 YMRHAINNPLSGMLYSRKALKNTDLNEEQMKQIHVGDNCH 940 Score = 58.5 bits (140), Expect = 2e-08 Identities = 28/34 (82%), Positives = 31/34 (91%) Frame = -2 Query: 476 MRLMNGDVRHLREAGMSIFILTAELACAPTAMRQ 375 +RLMNGDVRHLREAG+S FI+TAELA APTAM Q Sbjct: 1095 LRLMNGDVRHLREAGVSTFIITAELASAPTAMGQ 1128
>PHYA_ORYSA (P10931) Phytochrome A| Length = 1128 Score = 127 bits (319), Expect = 4e-29 Identities = 62/94 (65%), Positives = 70/94 (74%) Frame = -2 Query: 743 FDRSGKYTECLLSVNSRANEDGLITGVFCFIHIPSHXXXXXXXXXXXXXXXXLRRLKAFS 564 FDR+GKY ECLLSVN + N DG+ITGVFCFI +PSH L +LKA+S Sbjct: 844 FDRNGKYIECLLSVNRKVNADGVITGVFCFIQVPSHELQHALHVQQASQQNALTKLKAYS 903 Query: 563 YMRHAINNPLSGMLYSRKALKNTDLNEEQMRLMN 462 YMRHAINNPLSGMLYSRKALKNT LNEEQM+ +N Sbjct: 904 YMRHAINNPLSGMLYSRKALKNTGLNEEQMKEVN 937 Score = 50.4 bits (119), Expect = 6e-06 Identities = 23/29 (79%), Positives = 26/29 (89%) Frame = -2 Query: 476 MRLMNGDVRHLREAGMSIFILTAELACAP 390 +RLMNGDVRH+REAGMS FIL+ ELA AP Sbjct: 1098 LRLMNGDVRHMREAGMSTFILSVELASAP 1126
>PHYA_SORBI (P93526) Phytochrome a| Length = 1131 Score = 124 bits (310), Expect = 4e-28 Identities = 59/91 (64%), Positives = 66/91 (72%) Frame = -2 Query: 743 FDRSGKYTECLLSVNSRANEDGLITGVFCFIHIPSHXXXXXXXXXXXXXXXXLRRLKAFS 564 FDR+GKY ECLLSVN + N DG++TGVFCFIH+PS RRLKAFS Sbjct: 844 FDRNGKYIECLLSVNRKVNADGVVTGVFCFIHVPSDDLQHALHVQQASEQTAQRRLKAFS 903 Query: 563 YMRHAINNPLSGMLYSRKALKNTDLNEEQMR 471 YMRHAIN PLSGMLYSR+ LK+T LNEEQMR Sbjct: 904 YMRHAINKPLSGMLYSRETLKSTGLNEEQMR 934 Score = 55.1 bits (131), Expect = 2e-07 Identities = 25/34 (73%), Positives = 31/34 (91%) Frame = -2 Query: 476 MRLMNGDVRHLREAGMSIFILTAELACAPTAMRQ 375 +RLMNG++RH+REAGMS FILTAELA AP+A+ Q Sbjct: 1098 LRLMNGNIRHIREAGMSTFILTAELAAAPSAVGQ 1131
>PHYA1_MAIZE (P19862) Phytochrome A| Length = 1131 Score = 120 bits (301), Expect = 4e-27 Identities = 60/100 (60%), Positives = 69/100 (69%), Gaps = 1/100 (1%) Frame = -2 Query: 743 FDRSGKYTECLLSVNSRANEDGLITGVFCFIHIPSHXXXXXXXXXXXXXXXXLRRLKAFS 564 FDR+ KY ECLLSVN + N DG++TGVFCFIH+PS R+LKAFS Sbjct: 844 FDRNEKYVECLLSVNRKVNADGVVTGVFCFIHVPSDDLQHALHVQQASEQTAQRKLKAFS 903 Query: 563 YMRHAINNPLSGMLYSRKALKNTDLNEEQMRLMN-GDVRH 447 YMRHAIN PLSGMLYSR+ LK+T LNEEQMR + GD H Sbjct: 904 YMRHAINKPLSGMLYSRETLKSTGLNEEQMRQVRVGDNCH 943 Score = 56.6 bits (135), Expect = 8e-08 Identities = 26/32 (81%), Positives = 30/32 (93%) Frame = -2 Query: 476 MRLMNGDVRHLREAGMSIFILTAELACAPTAM 381 +RLMNGD+RHLREAGMS FILTAELA AP+A+ Sbjct: 1098 LRLMNGDIRHLREAGMSTFILTAELAAAPSAV 1129
>PHYA_PEA (P15001) Phytochrome A| Length = 1124 Score = 87.8 bits (216), Expect = 3e-17 Identities = 41/94 (43%), Positives = 58/94 (61%) Frame = -2 Query: 743 FDRSGKYTECLLSVNSRANEDGLITGVFCFIHIPSHXXXXXXXXXXXXXXXXLRRLKAFS 564 F R GKY ECLLSV+ + + +GL+TGVFCF+ + S L+RLK + Sbjct: 841 FSRKGKYVECLLSVSKKIDAEGLVTGVFCFLQLASPELQQALHIQRLSEQTALKRLKVLT 900 Query: 563 YMRHAINNPLSGMLYSRKALKNTDLNEEQMRLMN 462 YM+ I NPL+G+++S K L+ TDL EQ R++N Sbjct: 901 YMKRQIRNPLAGIVFSSKMLEGTDLETEQKRIVN 934 Score = 42.4 bits (98), Expect = 0.002 Identities = 19/33 (57%), Positives = 27/33 (81%) Frame = -2 Query: 491 LNEEQMRLMNGDVRHLREAGMSIFILTAELACA 393 ++ + ++LMNGDVR+L+EAG S FIL+ ELA A Sbjct: 1087 ISRKLLKLMNGDVRYLKEAGKSSFILSVELAAA 1119
>PHYA1_TOBAC (P33530) Phytochrome A1| Length = 1124 Score = 87.8 bits (216), Expect = 3e-17 Identities = 40/93 (43%), Positives = 58/93 (62%) Frame = -2 Query: 743 FDRSGKYTECLLSVNSRANEDGLITGVFCFIHIPSHXXXXXXXXXXXXXXXXLRRLKAFS 564 F R+GKY ECLL V+ R + +G +TG+FCF+ + SH L+RLK + Sbjct: 841 FARNGKYVECLLCVSKRLDREGAVTGLFCFLQLASHELQQALHIQRLSEQTALKRLKVLA 900 Query: 563 YMRHAINNPLSGMLYSRKALKNTDLNEEQMRLM 465 Y+R I NPLSG+++SRK L+ T+L EEQ ++ Sbjct: 901 YIRRQIRNPLSGIIFSRKMLEGTNLGEEQKNIL 933 Score = 39.3 bits (90), Expect = 0.013 Identities = 17/33 (51%), Positives = 27/33 (81%) Frame = -2 Query: 491 LNEEQMRLMNGDVRHLREAGMSIFILTAELACA 393 ++ + ++LMNG+V++LREAG S FI++ ELA A Sbjct: 1087 ISRKLVKLMNGEVQYLREAGRSTFIISVELAVA 1119
>PHYA_SOLTU (P30733) Phytochrome A| Length = 1123 Score = 87.4 bits (215), Expect = 4e-17 Identities = 41/102 (40%), Positives = 61/102 (59%) Frame = -2 Query: 743 FDRSGKYTECLLSVNSRANEDGLITGVFCFIHIPSHXXXXXXXXXXXXXXXXLRRLKAFS 564 F R GKY ECLL V+ R +++G +TG+FCF+ + SH L+RLK + Sbjct: 841 FARYGKYVECLLCVSKRLDKEGAVTGLFCFLQLASHELQQALHVQRLSEQTALKRLKVLA 900 Query: 563 YMRHAINNPLSGMLYSRKALKNTDLNEEQMRLMNGDVRHLRE 438 Y+R I NPLSG+++SRK L+ T L EEQ +++ + R+ Sbjct: 901 YIRRQIRNPLSGIIFSRKMLEGTSLGEEQKNILHTSAQCQRQ 942 Score = 38.9 bits (89), Expect = 0.017 Identities = 17/33 (51%), Positives = 27/33 (81%) Frame = -2 Query: 491 LNEEQMRLMNGDVRHLREAGMSIFILTAELACA 393 ++ + ++LMNG+V++LREAG S FI++ ELA A Sbjct: 1087 VSRKLVKLMNGEVQYLREAGRSTFIISVELAVA 1119
>PHYA_ARATH (P14712) Phytochrome A| Length = 1122 Score = 87.0 bits (214), Expect = 5e-17 Identities = 37/93 (39%), Positives = 59/93 (63%) Frame = -2 Query: 743 FDRSGKYTECLLSVNSRANEDGLITGVFCFIHIPSHXXXXXXXXXXXXXXXXLRRLKAFS 564 F R GKY ECLL V+ + + +G++TGVFCF+ + SH ++RLKA + Sbjct: 842 FTRGGKYVECLLCVSKKLDREGVVTGVFCFLQLASHELQQALHVQRLAERTAVKRLKALA 901 Query: 563 YMRHAINNPLSGMLYSRKALKNTDLNEEQMRLM 465 Y++ I NPLSG++++RK ++ T+L EQ R++ Sbjct: 902 YIKRQIRNPLSGIMFTRKMIEGTELGPEQRRIL 934 Score = 42.4 bits (98), Expect = 0.002 Identities = 19/33 (57%), Positives = 28/33 (84%) Frame = -2 Query: 491 LNEEQMRLMNGDVRHLREAGMSIFILTAELACA 393 ++ + ++LMNGDV++LR+AG S FI+TAELA A Sbjct: 1088 VSRKLVKLMNGDVQYLRQAGKSSFIITAELAAA 1120
>PHYA_SOYBN (P42500) Phytochrome A| Length = 1131 Score = 87.0 bits (214), Expect = 5e-17 Identities = 41/93 (44%), Positives = 57/93 (61%) Frame = -2 Query: 743 FDRSGKYTECLLSVNSRANEDGLITGVFCFIHIPSHXXXXXXXXXXXXXXXXLRRLKAFS 564 F R+GKY ECLLSV+ + + +GL+TGVFCF+ + S +RL A S Sbjct: 848 FARNGKYVECLLSVSKKLDVEGLVTGVFCFLQLASPELQQALHIQRLSEQTASKRLNALS 907 Query: 563 YMRHAINNPLSGMLYSRKALKNTDLNEEQMRLM 465 YM+ I NPL G+++SRK L+ TDL EQ +L+ Sbjct: 908 YMKRQIRNPLCGIVFSRKMLEGTDLGTEQKQLL 940 Score = 44.7 bits (104), Expect = 3e-04 Identities = 21/28 (75%), Positives = 25/28 (89%) Frame = -2 Query: 476 MRLMNGDVRHLREAGMSIFILTAELACA 393 ++LMNGDVR+LREAG S FIL+AELA A Sbjct: 1099 LKLMNGDVRYLREAGKSAFILSAELAAA 1126
>PHY_PICAB (Q40762) Phytochrome| Length = 1136 Score = 86.3 bits (212), Expect = 9e-17 Identities = 40/93 (43%), Positives = 59/93 (63%) Frame = -2 Query: 743 FDRSGKYTECLLSVNSRANEDGLITGVFCFIHIPSHXXXXXXXXXXXXXXXXLRRLKAFS 564 FDR GK TE LLS N R + +G+ITGVFCF+H+ S + RLK + Sbjct: 853 FDRHGKNTEALLSANKRTDAEGIITGVFCFLHVTSTELQQALQVQRMAEQAAMDRLKELA 912 Query: 563 YMRHAINNPLSGMLYSRKALKNTDLNEEQMRLM 465 Y+R I NPL G++++RK +++TDL+EEQ +++ Sbjct: 913 YIRQEIRNPLYGIIFTRKLMESTDLSEEQKQIV 945 Score = 37.4 bits (85), Expect = 0.050 Identities = 16/33 (48%), Positives = 24/33 (72%) Frame = -2 Query: 485 EEQMRLMNGDVRHLREAGMSIFILTAELACAPT 387 ++ +++MNGDV++LREAG S FI+ E A T Sbjct: 1101 QQLVKIMNGDVQYLREAGRSSFIINVEFPLAQT 1133
>PHYA_LATSA (P93673) Phytochrome type A| Length = 1124 Score = 86.3 bits (212), Expect = 9e-17 Identities = 40/94 (42%), Positives = 58/94 (61%) Frame = -2 Query: 743 FDRSGKYTECLLSVNSRANEDGLITGVFCFIHIPSHXXXXXXXXXXXXXXXXLRRLKAFS 564 F R GKY ECLLSV+ + + +GL+TGVFCF+ + S L+RLK + Sbjct: 841 FSRKGKYVECLLSVSKKIDAEGLVTGVFCFLQLASPELQQALHIQRLSEQTALKRLKVLT 900 Query: 563 YMRHAINNPLSGMLYSRKALKNTDLNEEQMRLMN 462 YM+ I NPL+G+++S K L+ TDL EQ +++N Sbjct: 901 YMKRQIRNPLAGIVFSSKMLEGTDLETEQKQIVN 934 Score = 42.4 bits (98), Expect = 0.002 Identities = 19/33 (57%), Positives = 27/33 (81%) Frame = -2 Query: 491 LNEEQMRLMNGDVRHLREAGMSIFILTAELACA 393 ++ + ++LMNGDVR+L+EAG S FIL+ ELA A Sbjct: 1087 ISRKLLKLMNGDVRYLKEAGKSSFILSVELAAA 1119
>PHYA_CUCPE (P06592) Phytochrome A| Length = 1124 Score = 82.4 bits (202), Expect = 1e-15 Identities = 38/91 (41%), Positives = 55/91 (60%) Frame = -2 Query: 737 RSGKYTECLLSVNSRANEDGLITGVFCFIHIPSHXXXXXXXXXXXXXXXXLRRLKAFSYM 558 R+G Y ECLL VN ++DG +TG FCF+ +PSH L+RL+A Y+ Sbjct: 842 RNGMYVECLLCVNKILDKDGAVTGFFCFLQLPSHELQQALNIQRLCEQTALKRLRALGYI 901 Query: 557 RHAINNPLSGMLYSRKALKNTDLNEEQMRLM 465 + I NPLSG+++SR+ L+ T+L EQ L+ Sbjct: 902 KRQIQNPLSGIIFSRRLLERTELGVEQKELL 932 Score = 43.1 bits (100), Expect = 0.001 Identities = 19/33 (57%), Positives = 27/33 (81%) Frame = -2 Query: 491 LNEEQMRLMNGDVRHLREAGMSIFILTAELACA 393 ++ + ++LMNGDVR++REAG S FI+T ELA A Sbjct: 1086 ISRKLVKLMNGDVRYMREAGKSSFIITVELAAA 1118
>PHY1_PHYPA (P36505) Phytochrome 1| Length = 1132 Score = 80.5 bits (197), Expect = 5e-15 Identities = 37/94 (39%), Positives = 56/94 (59%) Frame = -2 Query: 743 FDRSGKYTECLLSVNSRANEDGLITGVFCFIHIPSHXXXXXXXXXXXXXXXXLRRLKAFS 564 FDR GKY + LLS N R N DG+ITGVFCF+ I S + +LK + Sbjct: 835 FDREGKYVDVLLSTNKRTNADGVITGVFCFLQIASSELQQALKVQRATEKVAVAKLKELA 894 Query: 563 YMRHAINNPLSGMLYSRKALKNTDLNEEQMRLMN 462 Y+ I NPL G+ ++R+ L++TDL+++Q + ++ Sbjct: 895 YIVREIKNPLCGLTFTRQLLEDTDLSDDQQQFLD 928 Score = 33.5 bits (75), Expect = 0.72 Identities = 18/42 (42%), Positives = 25/42 (59%) Frame = -2 Query: 476 MRLMNGDVRHLREAGMSIFILTAELACAPTAMRQ**RSKCNT 351 +RLMNGDV ++REA F++ EL P A R S+C + Sbjct: 1087 VRLMNGDVHYVREAMQCYFVVNVEL---PMAQRDDASSQCRS 1125
>PHY1_SELMA (Q01549) Phytochrome 1| Length = 1134 Score = 79.7 bits (195), Expect = 9e-15 Identities = 38/89 (42%), Positives = 53/89 (59%) Frame = -2 Query: 743 FDRSGKYTECLLSVNSRANEDGLITGVFCFIHIPSHXXXXXXXXXXXXXXXXLRRLKAFS 564 FDR GKY E LL+ RA+ +G ITGVFCF+HI S L +LK + Sbjct: 841 FDRQGKYVEALLTATKRADAEGSITGVFCFLHIASAELQQALTVQRATEKVALSKLKELA 900 Query: 563 YMRHAINNPLSGMLYSRKALKNTDLNEEQ 477 Y+R I NPL G++++R ++ TDL+E+Q Sbjct: 901 YIRQEIKNPLYGIMFTRTLMETTDLSEDQ 929 Score = 32.7 bits (73), Expect = 1.2 Identities = 13/28 (46%), Positives = 22/28 (78%) Frame = -2 Query: 476 MRLMNGDVRHLREAGMSIFILTAELACA 393 ++LMNG+V ++REAG + F+++ EL A Sbjct: 1093 VKLMNGEVEYIREAGKNYFLVSLELPLA 1120
>PHYA_POPTM (O49934) Phytochrome A| Length = 1125 Score = 79.3 bits (194), Expect = 1e-14 Identities = 37/94 (39%), Positives = 57/94 (60%) Frame = -2 Query: 743 FDRSGKYTECLLSVNSRANEDGLITGVFCFIHIPSHXXXXXXXXXXXXXXXXLRRLKAFS 564 F R+GKY ECLL V+ + + +G +TGVFCF+ + S L+RLKA + Sbjct: 841 FARTGKYVECLLCVSKKLDREGAVTGVFCFLQLASQELQQALHVQRLSEQTALKRLKALA 900 Query: 563 YMRHAINNPLSGMLYSRKALKNTDLNEEQMRLMN 462 Y++ I NPLSG+++S K ++ T+L EQ L++ Sbjct: 901 YLKKQIWNPLSGIIFSGKMMEGTELGAEQKELLH 934 Score = 40.0 bits (92), Expect = 0.008 Identities = 17/31 (54%), Positives = 26/31 (83%) Frame = -2 Query: 491 LNEEQMRLMNGDVRHLREAGMSIFILTAELA 399 ++ + ++LMNGDVR++REAG S FI++ ELA Sbjct: 1086 ISRKLVKLMNGDVRYMREAGKSSFIISVELA 1116
>PHY2_CERPU (Q39557) Phytochrome 2| Length = 1121 Score = 79.0 bits (193), Expect = 1e-14 Identities = 36/93 (38%), Positives = 56/93 (60%) Frame = -2 Query: 740 DRSGKYTECLLSVNSRANEDGLITGVFCFIHIPSHXXXXXXXXXXXXXXXXLRRLKAFSY 561 +R GK+ E LLS N R N DG+ITGVFCF+ I S + +LK +Y Sbjct: 834 NREGKFVEALLSTNKRTNADGVITGVFCFLQIASSELQQALTVQRATEKVAIAKLKELAY 893 Query: 560 MRHAINNPLSGMLYSRKALKNTDLNEEQMRLMN 462 +R I NPL G+ ++R+ L++TDL+++Q + ++ Sbjct: 894 IRQEIKNPLCGITFTRQLLEDTDLSDDQKQFLD 926 Score = 30.0 bits (66), Expect = 7.9 Identities = 13/28 (46%), Positives = 19/28 (67%) Frame = -2 Query: 476 MRLMNGDVRHLREAGMSIFILTAELACA 393 +RLMNGDV+++RE F++ EL A Sbjct: 1085 VRLMNGDVQYVRENAQCYFVVYVELPMA 1112
>PHY_PINSY (Q41046) Phytochrome| Length = 1131 Score = 78.2 bits (191), Expect = 3e-14 Identities = 38/93 (40%), Positives = 52/93 (55%) Frame = -2 Query: 743 FDRSGKYTECLLSVNSRANEDGLITGVFCFIHIPSHXXXXXXXXXXXXXXXXLRRLKAFS 564 FD+ GKY E LL+ N R + DG ITG FCF I S RLK + Sbjct: 843 FDKQGKYVEALLTANKRTDADGRITGSFCFFRIASSELQHALEVQRQQEKKCFARLKELA 902 Query: 563 YMRHAINNPLSGMLYSRKALKNTDLNEEQMRLM 465 Y+R I NPL GM+++RK L+ TDL+++Q + + Sbjct: 903 YIRQEIKNPLYGMMFTRKLLEETDLSDDQKQFV 935 Score = 34.3 bits (77), Expect = 0.42 Identities = 15/34 (44%), Positives = 24/34 (70%) Frame = -2 Query: 476 MRLMNGDVRHLREAGMSIFILTAELACAPTAMRQ 375 ++LMNGDVR++RE+G+ F++ E P A R+ Sbjct: 1095 LKLMNGDVRYIRESGICYFLVNVEF---PMAQRE 1125
>PHYB_ARATH (P14713) Phytochrome B| Length = 1172 Score = 73.2 bits (178), Expect = 8e-13 Identities = 35/97 (36%), Positives = 52/97 (53%) Frame = -2 Query: 743 FDRSGKYTECLLSVNSRANEDGLITGVFCFIHIPSHXXXXXXXXXXXXXXXXLRRLKAFS 564 FDR+GK+ + LL+ N R + +G + G FCF+ IPS + K + Sbjct: 874 FDRNGKFVQALLTANKRVSLEGKVIGAFCFLQIPSPELQQALAVQRRQDTECFTKAKELA 933 Query: 563 YMRHAINNPLSGMLYSRKALKNTDLNEEQMRLMNGDV 453 Y+ I NPLSGM ++ L+ TDLNE+Q +L+ V Sbjct: 934 YICQVIKNPLSGMRFANSLLEATDLNEDQKQLLETSV 970
>PHYC_SORBI (P93528) Phytochrome C| Length = 1135 Score = 72.0 bits (175), Expect = 2e-12 Identities = 33/97 (34%), Positives = 51/97 (52%) Frame = -2 Query: 743 FDRSGKYTECLLSVNSRANEDGLITGVFCFIHIPSHXXXXXXXXXXXXXXXXLRRLKAFS 564 FD GKY E LL+VN R N +G ITG CF+H+ S K + Sbjct: 842 FDTDGKYIESLLTVNKRINAEGKITGAICFLHVASPELQHALQVQKMSEQAATNSFKELT 901 Query: 563 YMRHAINNPLSGMLYSRKALKNTDLNEEQMRLMNGDV 453 Y+ + NPL+GM ++ L+ ++L EEQ +L++ ++ Sbjct: 902 YIHQELRNPLNGMQFTCNLLEPSELTEEQRKLLSSNI 938
>PHY_MOUSC (P33529) Phytochrome| Length = 1124 Score = 72.0 bits (175), Expect = 2e-12 Identities = 33/93 (35%), Positives = 53/93 (56%) Frame = -2 Query: 743 FDRSGKYTECLLSVNSRANEDGLITGVFCFIHIPSHXXXXXXXXXXXXXXXXLRRLKAFS 564 +DRSGK E LL+ + R N +G++TGVFCF+H S + K + Sbjct: 835 YDRSGKIVEVLLTTSKRCNSEGVVTGVFCFLHTASSELQQALTVQKAAERVAEVKAKELA 894 Query: 563 YMRHAINNPLSGMLYSRKALKNTDLNEEQMRLM 465 Y+R I NPL G+ ++R +++T L+E+Q +L+ Sbjct: 895 YIRQEIQNPLDGIHFARSFMEHTVLSEDQKQLI 927
>PHYD_ARATH (P42497) Phytochrome D| Length = 1164 Score = 71.6 bits (174), Expect = 2e-12 Identities = 35/97 (36%), Positives = 52/97 (53%) Frame = -2 Query: 743 FDRSGKYTECLLSVNSRANEDGLITGVFCFIHIPSHXXXXXXXXXXXXXXXXLRRLKAFS 564 FDR G++ + LL++N R + DG I G FCF+ IPS R K + Sbjct: 878 FDRKGEFIQALLTLNKRVSIDGKIIGAFCFLQIPSPELQQALEVQRRQESEYFSRRKELA 937 Query: 563 YMRHAINNPLSGMLYSRKALKNTDLNEEQMRLMNGDV 453 Y+ I NPLSG+ ++ L++ DLNE+Q +L+ V Sbjct: 938 YIFQVIKNPLSGLRFTNSLLEDMDLNEDQKQLLETSV 974
>PHYC_ORYSA (Q9ZWI9) Phytochrome C| Length = 1137 Score = 69.3 bits (168), Expect = 1e-11 Identities = 32/97 (32%), Positives = 51/97 (52%) Frame = -2 Query: 743 FDRSGKYTECLLSVNSRANEDGLITGVFCFIHIPSHXXXXXXXXXXXXXXXXLRRLKAFS 564 F+ GKY E L++ R + +G ITG CF+H+ S + K + Sbjct: 844 FNTDGKYIESLMTATKRTDAEGKITGALCFLHVASPELQHALQVQKMSEQAAMNSFKELT 903 Query: 563 YMRHAINNPLSGMLYSRKALKNTDLNEEQMRLMNGDV 453 Y+R + NPL+GM ++R L+ +DL EEQ +L+ +V Sbjct: 904 YIRQELRNPLNGMQFTRNLLEPSDLTEEQRKLLASNV 940
>PHYA_PETCR (P55141) Phytochrome A| Length = 1129 Score = 69.3 bits (168), Expect = 1e-11 Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 3/105 (2%) Frame = -2 Query: 743 FDRSGKYTECLLSVNSRANEDGLITGVFCFIHIPSHXXXXXXXXXXXXXXXXLRRLKAFS 564 F GKY ECLL + + + +G +TG+FCF+ + S ++RLK S Sbjct: 846 FATDGKYVECLLCASKKLHGEGTVTGIFCFLQLASQELQQALHIQRLTEQTAMKRLKTLS 905 Query: 563 YMRHAINNPLSGMLYSRKALKNTDLNEEQMRLMNGDV---RHLRE 438 Y+R NPL G+ + R+ L+ + EEQ +L V RH+ + Sbjct: 906 YLRRQAKNPLCGINFVREKLEEIGMGEEQTKLFRTSVHCQRHVNK 950 Score = 42.4 bits (98), Expect = 0.002 Identities = 19/33 (57%), Positives = 26/33 (78%) Frame = -2 Query: 491 LNEEQMRLMNGDVRHLREAGMSIFILTAELACA 393 ++ + ++LMNGDV +LREAG S FI+T ELA A Sbjct: 1092 ISRKLVKLMNGDVHYLREAGKSTFIITVELAAA 1124
>PHYB_SORBI (P93527) Phytochrome B| Length = 1178 Score = 67.0 bits (162), Expect = 6e-11 Identities = 32/93 (34%), Positives = 50/93 (53%) Frame = -2 Query: 743 FDRSGKYTECLLSVNSRANEDGLITGVFCFIHIPSHXXXXXXXXXXXXXXXXLRRLKAFS 564 FD++GKY + LL+ N+R+ DG G FCF+ I S R+K + Sbjct: 890 FDKNGKYVQALLTANTRSKMDGKSIGAFCFLQIASAEIQQAFEIQRQQEKKCYARMKELA 949 Query: 563 YMRHAINNPLSGMLYSRKALKNTDLNEEQMRLM 465 Y+ I NPLSG+ ++ L+ TDLN++Q + + Sbjct: 950 YICQEIKNPLSGIRFTNSLLQMTDLNDDQRQFL 982
>PHYB_TOBAC (P29130) Phytochrome B| Length = 1132 Score = 64.7 bits (156), Expect = 3e-10 Identities = 32/93 (34%), Positives = 48/93 (51%) Frame = -2 Query: 743 FDRSGKYTECLLSVNSRANEDGLITGVFCFIHIPSHXXXXXXXXXXXXXXXXLRRLKAFS 564 FDR+GKY + LL+ N R N +G I G FCFI I S ++K + Sbjct: 845 FDRNGKYVQALLTANKRVNMEGQIIGAFCFIQIASPELQQALRVQRQQEKKCYSQMKELA 904 Query: 563 YMRHAINNPLSGMLYSRKALKNTDLNEEQMRLM 465 Y+ I +PL+G+ ++ L+ TDL E Q + + Sbjct: 905 YLCQEIKSPLNGIRFTNSLLEATDLTENQKQYL 937
>PHYB_ORYSA (P25764) Phytochrome B| Length = 1171 Score = 63.9 bits (154), Expect = 5e-10 Identities = 30/93 (32%), Positives = 49/93 (52%) Frame = -2 Query: 743 FDRSGKYTECLLSVNSRANEDGLITGVFCFIHIPSHXXXXXXXXXXXXXXXXLRRLKAFS 564 FD++GKY + LL+ N+R+ DG G FCF+ I S R+K + Sbjct: 883 FDKNGKYVQALLTANTRSRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELA 942 Query: 563 YMRHAINNPLSGMLYSRKALKNTDLNEEQMRLM 465 Y+ I NPL+G+ ++ L+ TDL ++Q + + Sbjct: 943 YIYQEIKNPLNGIRFTNSLLEMTDLKDDQRQFL 975
>PHYB_SOYBN (P42499) Phytochrome B| Length = 1156 Score = 59.7 bits (143), Expect = 9e-09 Identities = 31/96 (32%), Positives = 45/96 (46%) Frame = -2 Query: 740 DRSGKYTECLLSVNSRANEDGLITGVFCFIHIPSHXXXXXXXXXXXXXXXXLRRLKAFSY 561 DR GKY + L+ N R N +G I G FCF+ I S L R+K +Y Sbjct: 871 DRHGKYVQTFLTANKRVNMEGQIIGAFCFLQIMSPELQQALKAQRQQEKEFLGRMKELAY 930 Query: 560 MRHAINNPLSGMLYSRKALKNTDLNEEQMRLMNGDV 453 + + PLSG+ ++ L+ T L EQ + + V Sbjct: 931 ICQGVKKPLSGIRFTNSLLEATSLTNEQKQFLETSV 966
>PHYB_SOLTU (P34094) Phytochrome B| Length = 1130 Score = 59.7 bits (143), Expect = 9e-09 Identities = 30/93 (32%), Positives = 47/93 (50%) Frame = -2 Query: 743 FDRSGKYTECLLSVNSRANEDGLITGVFCFIHIPSHXXXXXXXXXXXXXXXXLRRLKAFS 564 FDR+GKY + LL+ N R N +G G FCFI I S ++K + Sbjct: 843 FDRNGKYVQALLTANKRVNMEGDTIGAFCFIQIASPELQQALRVQRQQEKKCYSQMKELA 902 Query: 563 YMRHAINNPLSGMLYSRKALKNTDLNEEQMRLM 465 Y+ I +PL+G+ ++ L+ T+L E Q + + Sbjct: 903 YICQEIKSPLNGIRFTNSLLEATNLTENQKQYL 935
>PHYC_ARATH (P14714) Phytochrome C| Length = 1111 Score = 59.3 bits (142), Expect = 1e-08 Identities = 28/97 (28%), Positives = 47/97 (48%) Frame = -2 Query: 743 FDRSGKYTECLLSVNSRANEDGLITGVFCFIHIPSHXXXXXXXXXXXXXXXXLRRLKAFS 564 + R G + E LLS N R + +G +TGV CF+ +PS L + Sbjct: 829 YHRDGSFIEALLSANKRTDIEGKVTGVLCFLQVPSPELQYALQVQQISEHAIACALNKLA 888 Query: 563 YMRHAINNPLSGMLYSRKALKNTDLNEEQMRLMNGDV 453 Y+RH + +P + + + L ++ L+E+Q RL+ V Sbjct: 889 YLRHEVKDPEKAISFLQDLLHSSGLSEDQKRLLRTSV 925
>PHY_ADICA (P42496) Phytochrome 1| Length = 1118 Score = 58.9 bits (141), Expect = 2e-08 Identities = 31/93 (33%), Positives = 47/93 (50%) Frame = -2 Query: 743 FDRSGKYTECLLSVNSRANEDGLITGVFCFIHIPSHXXXXXXXXXXXXXXXXLRRLKAFS 564 +DR+G+ E LL + R + DG ITGVFCF+H S K S Sbjct: 831 YDRNGRRVEALLIASKRTDADGRITGVFCFLHTASPELLQALIIKRAKEKVD----KELS 886 Query: 563 YMRHAINNPLSGMLYSRKALKNTDLNEEQMRLM 465 Y++ + PL G+ ++R L+ T+L EQ +L+ Sbjct: 887 YVKEELKKPLEGLAFTRTVLEGTNLTIEQRQLI 919
>PHYB1_LYCES (Q9ZS62) Phytochrome B1| Length = 1131 Score = 58.5 bits (140), Expect = 2e-08 Identities = 29/93 (31%), Positives = 47/93 (50%) Frame = -2 Query: 743 FDRSGKYTECLLSVNSRANEDGLITGVFCFIHIPSHXXXXXXXXXXXXXXXXLRRLKAFS 564 FDR+GKY + LL+ N R N +G G FCFI I S ++K + Sbjct: 844 FDRNGKYVQALLTANKRVNMEGDTIGAFCFIQIASPELQQALRVQRQQEKKCYSQMKELA 903 Query: 563 YMRHAINNPLSGMLYSRKALKNTDLNEEQMRLM 465 Y+ + +PL+G+ ++ L+ T+L E Q + + Sbjct: 904 YICQEVKSPLNGIRFTNSLLEATNLTEYQKQYL 936
>PHYE_IPONI (P55004) Phytochrome E| Length = 1115 Score = 52.8 bits (125), Expect = 1e-06 Identities = 26/93 (27%), Positives = 46/93 (49%) Frame = -2 Query: 743 FDRSGKYTECLLSVNSRANEDGLITGVFCFIHIPSHXXXXXXXXXXXXXXXXLRRLKAFS 564 FDR G + + ++ N R +E G I G FCF+ + L LK F+ Sbjct: 820 FDRKGNFIDVFITANKRTDERGNIIGCFCFLQTMAVDHPQISARDIEDDRECLSTLKEFA 879 Query: 563 YMRHAINNPLSGMLYSRKALKNTDLNEEQMRLM 465 Y++ + NPL+G+ ++ K L+ T ++ Q + + Sbjct: 880 YIQQQMKNPLNGIRFTHKLLEGTVTSDHQKQFL 912
>PHYE_ARATH (P42498) Phytochrome E| Length = 1112 Score = 44.3 bits (103), Expect = 4e-04 Identities = 23/93 (24%), Positives = 45/93 (48%) Frame = -2 Query: 743 FDRSGKYTECLLSVNSRANEDGLITGVFCFIHIPSHXXXXXXXXXXXXXXXXLRRLKAFS 564 F++ GKY E L+ N N +G + F F+ I + + L + Sbjct: 821 FNKEGKYIEASLTANKSTNIEGKVIRCFFFLQIINKESGLSCPELKESA----QSLNELT 876 Query: 563 YMRHAINNPLSGMLYSRKALKNTDLNEEQMRLM 465 Y+R I NPL+G+ ++ K L++++++ Q + + Sbjct: 877 YVRQEIKNPLNGIRFAHKLLESSEISASQRQFL 909
>VGLX_PRVRI (P07562) Secreted glycoprotein GX| Length = 498 Score = 32.7 bits (73), Expect = 1.2 Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 10/78 (12%) Frame = +3 Query: 114 HSRTDEKNTTTHHKYVTKPCHTTFLYPR-LITDPTGQP-LLLPFC--------IHLTLYH 263 H R D++ HH+ +P TF+ P + PTG P LLL F +HLT Sbjct: 356 HHRADDRGPQRHHRLPPEP---TFVSPSDIFVTPTGSPALLLGFLGSALASRPLHLTAGE 412 Query: 264 SLLQPRRIFPASHHRRSL 317 + R S H RSL Sbjct: 413 TAQHVREAQQKSRHIRSL 430
>GIDA_RALSO (Q8XU65) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 647 Score = 31.2 bits (69), Expect = 3.6 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%) Frame = +3 Query: 150 HKYVTKPCHTTFLYPRLITD----PTGQPLLLPFCIHLTLYHSL 269 H++ +K H FL P +T P G LPF + L L HS+ Sbjct: 286 HRFASKDSHQIFLEPEGLTTNEFYPNGVSTSLPFDVQLDLIHSM 329
>GIDA_BURPS (Q63PG8) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 657 Score = 31.2 bits (69), Expect = 3.6 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%) Frame = +3 Query: 150 HKYVTKPCHTTFLYPRLITD----PTGQPLLLPFCIHLTLYHSL 269 H++ +K H FL P +T P G LPF + L L HS+ Sbjct: 286 HRFASKDSHQIFLEPEGLTTNEFYPNGISTSLPFDVQLALVHSM 329
>GIDA_BURMA (Q62FS8) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 657 Score = 31.2 bits (69), Expect = 3.6 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%) Frame = +3 Query: 150 HKYVTKPCHTTFLYPRLITD----PTGQPLLLPFCIHLTLYHSL 269 H++ +K H FL P +T P G LPF + L L HS+ Sbjct: 286 HRFASKDSHQIFLEPEGLTTNEFYPNGISTSLPFDVQLALVHSM 329
>EFTU_TOBAC (P68158) Elongation factor Tu, chloroplast precursor (EF-Tu)| Length = 478 Score = 30.8 bits (68), Expect = 4.6 Identities = 17/43 (39%), Positives = 25/43 (58%) Frame = +2 Query: 209 SYRPTFASSFLHSLNTLPQPAATASHLPRKSSPSFAHGSFEMK 337 S+ P ++ FLHS T P++TA+H R+ + A G FE K Sbjct: 39 SFTPNCSTLFLHSPAT---PSSTATHRHRRFTVRAARGKFERK 78
>EFTUA_NICSY (Q40450) Elongation factor TuA, chloroplast precursor (EF-TuA)| Length = 478 Score = 30.8 bits (68), Expect = 4.6 Identities = 17/43 (39%), Positives = 25/43 (58%) Frame = +2 Query: 209 SYRPTFASSFLHSLNTLPQPAATASHLPRKSSPSFAHGSFEMK 337 S+ P ++ FLHS T P++TA+H R+ + A G FE K Sbjct: 39 SFTPNCSTLFLHSPAT---PSSTATHRHRRFTVRAARGKFERK 78
>LUXQ_VIBCH (Q9KLK7) Autoinducer 2 sensor kinase/phosphatase luxQ (EC 2.7.13.3)| (EC 3.1.3.-) Length = 857 Score = 30.4 bits (67), Expect = 6.1 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = -2 Query: 581 RLKAFSYMRHAINNPLSGMLYSRKALKNTDLNEEQ 477 R + + M H + PL+G+L + LK T LN+EQ Sbjct: 480 RAEFLAKMSHELRTPLNGVLGVSQLLKRTPLNDEQ 514 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 92,040,129 Number of Sequences: 219361 Number of extensions: 1706705 Number of successful extensions: 3940 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 3799 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3927 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7819576386 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
