ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd19f13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY111877.1| Zea mays CL29295_1 mRNA sequence 309 6e-81
2ref|NM_189514.1| Oryza sativa (japonica cultivar-group), predic... 212 1e-51
3dbj|AK122066.1| Oryza sativa (japonica cultivar-group) cDNA clon... 212 1e-51
4dbj|AK060263.1| Oryza sativa (japonica cultivar-group) cDNA clon... 212 1e-51
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 172 9e-40
6dbj|AP003228.3| Oryza sativa (japonica cultivar-group) genomic D... 172 9e-40
7ref|XM_470476.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.1
8gb|AC128647.8| Oryza sativa (japonica cultivar-group) chromosome... 42 2.1
9gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 2.1
10gb|AC113126.10| Mus musculus chromosome 6, clone RP23-352D5, com... 42 2.1
11emb|AL954346.7| Mouse DNA sequence from clone RP23-298H6 on chro... 42 2.1
12gb|AC155730.9| Mus musculus 6 BAC RP24-182M11 (Roswell Park Canc... 42 2.1
13gb|AC090014.10| Homo sapiens 12 BAC RP11-424B7 (Roswell Park Can... 42 2.1
14ref|XM_688980.1| PREDICTED: Danio rerio similar to zinc finger p... 42 2.1
15gb|AC096690.5| Oryza sativa chromosome 3 BAC OSJNBa0059G06 genom... 42 2.1
16emb|BX682234.9| Zebrafish DNA sequence from clone CH211-193E13, ... 42 2.1
17dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
18dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
19emb|AL928915.24| Mouse DNA sequence from clone RP23-276J8 on chr... 42 2.1
20dbj|AP005414.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
21dbj|AP004123.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
22dbj|AK111501.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.1
23emb|AL808121.7| Zebrafish DNA sequence from clone CH211-251B22, ... 42 2.1
24gb|AC130542.4| Mus musculus chromosome 6 clone RP24-167F4, compl... 40 8.3
25gb|AC105164.12| Mus musculus chromosome 6, clone RP24-296I7, com... 40 8.3
26ref|XM_366307.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 8.3
27gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complet... 40 8.3
28emb|BX957236.8| Zebrafish DNA sequence from clone DKEY-178O3 in ... 40 8.3
29emb|CR457463.6| Zebrafish DNA sequence from clone DKEY-110G19 in... 40 8.3
30gb|AC121889.3| Mus musculus BAC clone RP24-146D9 from chromosome... 40 8.3
31emb|AL354774.17| Human DNA sequence from clone RP11-67L17 on chr... 40 8.3
32gb|AC161207.4| Mus musculus chromosome 1, clone RP23-66G23, comp... 40 8.3
33emb|AJ276209.1|CST276209 Clostridium sticklandii ORF1 (partial),... 40 8.3
34gb|AC020630.21| Homo sapiens 3 BAC RP11-197N19 (Roswell Park Can... 40 8.3
35gb|AC145456.1| Cicer arietinum strain FLIP84-92C clone gl1-15o9,... 40 8.3
36gb|AC149225.18| Danio rerio clone ch211-103f17, complete sequence 40 8.3
37gb|AC161756.3| Mus musculus BAC clone RP24-106J5 from chromosome... 40 8.3
38gb|AC158681.3| Mus musculus 6 BAC RP23-338E5 (Roswell Park Cance... 40 8.3
39gb|AF083424.1|AF083424 Ateline herpesvirus 3 complete genome 40 8.3
40gb|AC154526.2| Mus musculus BAC clone RP24-69I14 from 16, comple... 40 8.3
41emb|AL844512.16| Zebrafish DNA sequence from clone DKEY-8M7, com... 40 8.3
42gb|AC140110.2| Mus musculus BAC clone RP23-29H6 from 6, complete... 40 8.3 
>gb|AY111877.1| Zea mays CL29295_1 mRNA sequence
          Length = 615

 Score =  309 bits (156), Expect = 6e-81
 Identities = 272/311 (87%)
 Strand = Plus / Plus

                                                                       
Query: 294 gactagaagggggtctggcatagcgggcatgtggacttgttggaggtggagaaccacttg 353
           |||||||| || |||||||| |||||||| || || |||||||| |||||||||||||||
Sbjct: 148 gactagaacggagtctggcacagcgggcaagtcgatttgttggacgtggagaaccacttg 207

                                                                       
Query: 354 tagaggcaggcgccgtggaacttgtgcttgcacgtcttgcacgccagccgcgggagcccg 413
           |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||   |
Sbjct: 208 tagaggcaggcgccgtggaacttgggcttgcacgtcttgcacgccagccgcggcaggttg 267

                                                                       
Query: 414 tggttgctcgtgtgcaggatgctgtagcagatggggcactcctccaccccctcaaactcc 473
           |||||||| ||||| || |||||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 268 tggttgctggtgtggagaatgctgtaacagattgggcactcctccacgccctcaaactcc 327

                                                                       
Query: 474 ttgtcaaagttgttcttccaggtccggatcgcctccgcaacggcgccattctggttgcgc 533
           ||||| || ||| ||||||| || ||||||||||| || |  |||||||||||| |||| 
Sbjct: 328 ttgtcgaaattgctcttccacgtgcggatcgcctctgctatcgcgccattctggctgcgg 387

                                                                       
Query: 534 acgaacgacgtcagcgacagcagccatttcctgcacttgacctcgctgatgcccangctt 593
           ||||| ||||| || || ||||||||||| ||||||||||| || ||||| ||||  |||
Sbjct: 388 acgaatgacgtgagggaaagcagccattttctgcacttgacttcactgatacccaaactt 447

                      
Query: 594 ctcgtgcattc 604
           |||||||||||
Sbjct: 448 ctcgtgcattc 458
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>ref|NM_189514.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 5844

 Score =  212 bits (107), Expect = 1e-51
 Identities = 235/278 (84%)
 Strand = Plus / Minus

                                                                        
Query: 330  ttgttggaggtggagaaccacttgtagaggcaggcgccgtggaacttgtgcttgcacgtc 389
            |||||||| || |||||||||||||||||||| || || || ||||| ||| ||||||||
Sbjct: 5810 ttgttggatgttgagaaccacttgtagaggcaagcaccatgaaacttatgcctgcacgtc 5751

                                                                        
Query: 390  ttgcacgccagccgcgggagcccgtggttgctcgtgtgcaggatgctgtagcagatgggg 449
            ||||| |||||||| || || | |||||||||||||||||| |||||||| ||||| |||
Sbjct: 5750 ttgcaagccagccggggaaggctgtggttgctcgtgtgcagaatgctgtaacagattggg 5691

                                                                        
Query: 450  cactcctccaccccctcaaactccttgtcaaagttgttcttccaggtccggatcgcctcc 509
            || ||||||||||||||||||||||||||||| ||| | ||||| ||  |||||||||| 
Sbjct: 5690 cattcctccaccccctcaaactccttgtcaaaattgcttttccaagtgtggatcgcctct 5631

                                                                        
Query: 510  gcaacggcgccattctggttgcgcacgaacgacgtcagcgacagcagccatttcctgcac 569
            || |  ||||| ||||||||||| ||||| | ||| || || |||| |||||| ||||||
Sbjct: 5630 gctattgcgccgttctggttgcgtacgaatgccgtgagagaaagcaaccattttctgcac 5571

                                                  
Query: 570  ttgacctcgctgatgcccangcttctcgtgcattcaac 607
            || || || ||||||||||  ||||| || ||||||||
Sbjct: 5570 ttcacttcactgatgcccaaacttctggtacattcaac 5533
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>dbj|AK122066.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033116G14, full
            insert sequence
          Length = 6034

 Score =  212 bits (107), Expect = 1e-51
 Identities = 235/278 (84%)
 Strand = Plus / Minus

                                                                        
Query: 330  ttgttggaggtggagaaccacttgtagaggcaggcgccgtggaacttgtgcttgcacgtc 389
            |||||||| || |||||||||||||||||||| || || || ||||| ||| ||||||||
Sbjct: 5823 ttgttggatgttgagaaccacttgtagaggcaagcaccatgaaacttatgcctgcacgtc 5764

                                                                        
Query: 390  ttgcacgccagccgcgggagcccgtggttgctcgtgtgcaggatgctgtagcagatgggg 449
            ||||| |||||||| || || | |||||||||||||||||| |||||||| ||||| |||
Sbjct: 5763 ttgcaagccagccggggaaggctgtggttgctcgtgtgcagaatgctgtaacagattggg 5704

                                                                        
Query: 450  cactcctccaccccctcaaactccttgtcaaagttgttcttccaggtccggatcgcctcc 509
            || ||||||||||||||||||||||||||||| ||| | ||||| ||  |||||||||| 
Sbjct: 5703 cattcctccaccccctcaaactccttgtcaaaattgcttttccaagtgtggatcgcctct 5644

                                                                        
Query: 510  gcaacggcgccattctggttgcgcacgaacgacgtcagcgacagcagccatttcctgcac 569
            || |  ||||| ||||||||||| ||||| | ||| || || |||| |||||| ||||||
Sbjct: 5643 gctattgcgccgttctggttgcgtacgaatgccgtgagagaaagcaaccattttctgcac 5584

                                                  
Query: 570  ttgacctcgctgatgcccangcttctcgtgcattcaac 607
            || || || ||||||||||  ||||| || ||||||||
Sbjct: 5583 ttcacttcactgatgcccaaacttctggtacattcaac 5546
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>dbj|AK060263.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-005-B04, full
            insert sequence
          Length = 1988

 Score =  212 bits (107), Expect = 1e-51
 Identities = 235/278 (84%)
 Strand = Plus / Minus

                                                                        
Query: 330  ttgttggaggtggagaaccacttgtagaggcaggcgccgtggaacttgtgcttgcacgtc 389
            |||||||| || |||||||||||||||||||| || || || ||||| ||| ||||||||
Sbjct: 1827 ttgttggatgttgagaaccacttgtagaggcaagcaccatgaaacttatgcctgcacgtc 1768

                                                                        
Query: 390  ttgcacgccagccgcgggagcccgtggttgctcgtgtgcaggatgctgtagcagatgggg 449
            ||||| |||||||| || || | |||||||||||||||||| |||||||| ||||| |||
Sbjct: 1767 ttgcaagccagccggggaaggctgtggttgctcgtgtgcagaatgctgtaacagattggg 1708

                                                                        
Query: 450  cactcctccaccccctcaaactccttgtcaaagttgttcttccaggtccggatcgcctcc 509
            || ||||||||||||||||||||||||||||| ||| | ||||| ||  |||||||||| 
Sbjct: 1707 cattcctccaccccctcaaactccttgtcaaaattgcttttccaagtgtggatcgcctct 1648

                                                                        
Query: 510  gcaacggcgccattctggttgcgcacgaacgacgtcagcgacagcagccatttcctgcac 569
            || |  ||||| ||||||||||| ||||| | ||| || || |||| |||||| ||||||
Sbjct: 1647 gctattgcgccgttctggttgcgtacgaatgccgtgagagaaagcaaccattttctgcac 1588

                                                  
Query: 570  ttgacctcgctgatgcccangcttctcgtgcattcaac 607
            || || || ||||||||||  ||||| || ||||||||
Sbjct: 1587 ttcacttcactgatgcccaaacttctggtacattcaac 1550
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  172 bits (87), Expect = 9e-40
 Identities = 156/179 (87%)
 Strand = Plus / Plus

                                                                            
Query: 330      ttgttggaggtggagaaccacttgtagaggcaggcgccgtggaacttgtgcttgcacgtc 389
                |||||||| || |||||||||||||||||||| || || || ||||| ||| ||||||||
Sbjct: 43195129 ttgttggatgttgagaaccacttgtagaggcaagcaccatgaaacttatgcctgcacgtc 43195188

                                                                            
Query: 390      ttgcacgccagccgcgggagcccgtggttgctcgtgtgcaggatgctgtagcagatgggg 449
                ||||| |||||||| || || | |||||||||||||||||| |||||||| ||||| |||
Sbjct: 43195189 ttgcaagccagccggggaaggctgtggttgctcgtgtgcagaatgctgtaacagattggg 43195248

                                                                           
Query: 450      cactcctccaccccctcaaactccttgtcaaagttgttcttccaggtccggatcgcctc 508
                || ||||||||||||||||||||||||||||| ||| | ||||| ||  ||||||||||
Sbjct: 43195249 cattcctccaccccctcaaactccttgtcaaaattgcttttccaagtgtggatcgcctc 43195307
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>dbj|AP003228.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0020E09
          Length = 149195

 Score =  172 bits (87), Expect = 9e-40
 Identities = 156/179 (87%)
 Strand = Plus / Plus

                                                                         
Query: 330   ttgttggaggtggagaaccacttgtagaggcaggcgccgtggaacttgtgcttgcacgtc 389
             |||||||| || |||||||||||||||||||| || || || ||||| ||| ||||||||
Sbjct: 82584 ttgttggatgttgagaaccacttgtagaggcaagcaccatgaaacttatgcctgcacgtc 82643

                                                                         
Query: 390   ttgcacgccagccgcgggagcccgtggttgctcgtgtgcaggatgctgtagcagatgggg 449
             ||||| |||||||| || || | |||||||||||||||||| |||||||| ||||| |||
Sbjct: 82644 ttgcaagccagccggggaaggctgtggttgctcgtgtgcagaatgctgtaacagattggg 82703

                                                                        
Query: 450   cactcctccaccccctcaaactccttgtcaaagttgttcttccaggtccggatcgcctc 508
             || ||||||||||||||||||||||||||||| ||| | ||||| ||  ||||||||||
Sbjct: 82704 cattcctccaccccctcaaactccttgtcaaaattgcttttccaagtgtggatcgcctc 82762
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>ref|XM_470476.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2565

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 286 ctaaactagactagaaggggg 306
           |||||||||||||||||||||
Sbjct: 403 ctaaactagactagaaggggg 383
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>gb|AC128647.8| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0062G19, complete sequence
          Length = 92392

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 286   ctaaactagactagaaggggg 306
             |||||||||||||||||||||
Sbjct: 74931 ctaaactagactagaaggggg 74911
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 286      ctaaactagactagaaggggg 306
                |||||||||||||||||||||
Sbjct: 35820992 ctaaactagactagaaggggg 35820972
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>gb|AC113126.10| Mus musculus chromosome 6, clone RP23-352D5, complete sequence
          Length = 176364

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 322    atgtggacttgttggaggtgg 342
              |||||||||||||||||||||
Sbjct: 160445 atgtggacttgttggaggtgg 160465
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>emb|AL954346.7| Mouse DNA sequence from clone RP23-298H6 on chromosome 11 Contains part
              of a novel gene, the Efemp1 gene for epidermal growth
              factor-containing fibulin-like extracellular matrix protein
              1 and a laminin receptor 1 (ribosomal protein SA) (Lamr1)
              pseudogene, complete sequence
          Length = 178153

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 216    aactcaaggaaacatgaatca 236
              |||||||||||||||||||||
Sbjct: 158717 aactcaaggaaacatgaatca 158697
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>gb|AC155730.9| Mus musculus 6 BAC RP24-182M11 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 171603

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 322    atgtggacttgttggaggtgg 342
              |||||||||||||||||||||
Sbjct: 120799 atgtggacttgttggaggtgg 120779
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>gb|AC090014.10| Homo sapiens 12 BAC RP11-424B7 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 173480

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 45    atcataattcctgattacaacatgt 69
             |||||||||||||||||||| ||||
Sbjct: 45879 atcataattcctgattacaaaatgt 45855
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>ref|XM_688980.1| PREDICTED: Danio rerio similar to zinc finger protein 294
            (LOC565710), mRNA
          Length = 2127

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 453  tcctccaccccctcaaactccttgtcaaagttgttcttcca 493
            |||||||||||||||||   ||||||||  |||||||||||
Sbjct: 1382 tcctccaccccctcaaaacgcttgtcaacattgttcttcca 1342
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>gb|AC096690.5| Oryza sativa chromosome 3 BAC OSJNBa0059G06 genomic sequence, complete
              sequence
          Length = 145115

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 286    ctaaactagactagaaggggg 306
              |||||||||||||||||||||
Sbjct: 140133 ctaaactagactagaaggggg 140153
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>emb|BX682234.9| Zebrafish DNA sequence from clone CH211-193E13, complete sequence
          Length = 165319

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 59     ttacaacatgtcctctgtatt 79
              |||||||||||||||||||||
Sbjct: 162181 ttacaacatgtcctctgtatt 162161
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 286      ctaaactagactagaaggggg 306
                |||||||||||||||||||||
Sbjct: 35911122 ctaaactagactagaaggggg 35911102
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 223      ggaaacatgaatcatgtgaac 243
                |||||||||||||||||||||
Sbjct: 11345050 ggaaacatgaatcatgtgaac 11345070



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 223      ggaaacatgaatcatgtgaac 243
                |||||||||||||||||||||
Sbjct: 11248437 ggaaacatgaatcatgtgaac 11248417
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>emb|AL928915.24| Mouse DNA sequence from clone RP23-276J8 on chromosome 2, complete
             sequence
          Length = 145879

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 347   ccacttgtagaggcaggcgcc 367
             |||||||||||||||||||||
Sbjct: 27658 ccacttgtagaggcaggcgcc 27638
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>dbj|AP005414.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0073G17
          Length = 162391

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 223    ggaaacatgaatcatgtgaac 243
              |||||||||||||||||||||
Sbjct: 147865 ggaaacatgaatcatgtgaac 147885



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 223   ggaaacatgaatcatgtgaac 243
             |||||||||||||||||||||
Sbjct: 51252 ggaaacatgaatcatgtgaac 51232
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>dbj|AP004123.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1654_A02
          Length = 128520

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 223   ggaaacatgaatcatgtgaac 243
             |||||||||||||||||||||
Sbjct: 14522 ggaaacatgaatcatgtgaac 14542
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>dbj|AK111501.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000N04, full
           insert sequence
          Length = 2565

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 286 ctaaactagactagaaggggg 306
           |||||||||||||||||||||
Sbjct: 403 ctaaactagactagaaggggg 383
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>emb|AL808121.7| Zebrafish DNA sequence from clone CH211-251B22, complete sequence
          Length = 154450

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 550   acagcagccatttcctgcact 570
             |||||||||||||||||||||
Sbjct: 89883 acagcagccatttcctgcact 89863
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>gb|AC130542.4| Mus musculus chromosome 6 clone RP24-167F4, complete sequence
          Length = 192106

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 61    acaacatgtcctctgtattt 80
             ||||||||||||||||||||
Sbjct: 83156 acaacatgtcctctgtattt 83175
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>gb|AC105164.12| Mus musculus chromosome 6, clone RP24-296I7, complete sequence
          Length = 178877

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 61   acaacatgtcctctgtattt 80
            ||||||||||||||||||||
Sbjct: 8494 acaacatgtcctctgtattt 8513
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>ref|XM_366307.1| Magnaporthe grisea 70-15 hypothetical protein (MG10526.4) partial
            mRNA
          Length = 4905

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 431  gatgctgtagcagatggggcactc 454
            ||||||||||||||||| ||||||
Sbjct: 4728 gatgctgtagcagatggcgcactc 4705
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>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence
          Length = 2580084

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 515    ggcgccattctggttgcgca 534
              ||||||||||||||||||||
Sbjct: 156607 ggcgccattctggttgcgca 156588
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>emb|BX957236.8| Zebrafish DNA sequence from clone DKEY-178O3 in linkage group 6,
             complete sequence
          Length = 211391

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 190   taacaacaaacaaacttgac 209
             ||||||||||||||||||||
Sbjct: 33428 taacaacaaacaaacttgac 33409
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>emb|CR457463.6| Zebrafish DNA sequence from clone DKEY-110G19 in linkage group 4,
              complete sequence
          Length = 145220

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 230    tgaatcatgtgaacaagcaa 249
              ||||||||||||||||||||
Sbjct: 121866 tgaatcatgtgaacaagcaa 121885
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>gb|AC121889.3| Mus musculus BAC clone RP24-146D9 from chromosome 1, complete sequence
          Length = 160207

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 322   atgtggacttgttggaggtg 341
             ||||||||||||||||||||
Sbjct: 69804 atgtggacttgttggaggtg 69785
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>emb|AL354774.17| Human DNA sequence from clone RP11-67L17 on chromosome 13, complete
            sequence
          Length = 125693

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 144  tgctttccaaaatttgtttc 163
            ||||||||||||||||||||
Sbjct: 6924 tgctttccaaaatttgtttc 6905
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>gb|AC161207.4| Mus musculus chromosome 1, clone RP23-66G23, complete sequence
          Length = 197037

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 322    atgtggacttgttggaggtg 341
              ||||||||||||||||||||
Sbjct: 187167 atgtggacttgttggaggtg 187186
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>emb|AJ276209.1|CST276209 Clostridium sticklandii ORF1 (partial), grdX gene, trxB gene, trxA
            gene, grdE gene, grdA gene, grdB gene, grdC gene, grdD
            gene, bmpA gene, rbsA gene, rbsC-1 gene and rbcC-2 gene
            (partial)
          Length = 13335

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 236  atgtgaacaagcaagaactaatca 259
            |||| |||||||||||||||||||
Sbjct: 2968 atgtaaacaagcaagaactaatca 2991
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>gb|AC020630.21| Homo sapiens 3 BAC RP11-197N19 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 164519

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 296   ctagaagggggtctggcata 315
             ||||||||||||||||||||
Sbjct: 11665 ctagaagggggtctggcata 11646
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>gb|AC145456.1| Cicer arietinum strain FLIP84-92C clone gl1-15o9, complete sequence
          Length = 45868

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 76    tatttgcacaaaacttgtca 95
             ||||||||||||||||||||
Sbjct: 29654 tatttgcacaaaacttgtca 29673
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>gb|AC149225.18| Danio rerio clone ch211-103f17, complete sequence
          Length = 185038

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 190    taacaacaaacaaacttgac 209
              ||||||||||||||||||||
Sbjct: 135718 taacaacaaacaaacttgac 135737
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>gb|AC161756.3| Mus musculus BAC clone RP24-106J5 from chromosome 16, complete sequence
          Length = 219500

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 323    tgtggacttgttggaggtgg 342
              ||||||||||||||||||||
Sbjct: 163966 tgtggacttgttggaggtgg 163947



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 323    tgtggacttgttggaggtgg 342
              ||||||||||||||||||||
Sbjct: 130405 tgtggacttgttggaggtgg 130386
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>gb|AC158681.3| Mus musculus 6 BAC RP23-338E5 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 202460

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 61     acaacatgtcctctgtattt 80
              ||||||||||||||||||||
Sbjct: 181594 acaacatgtcctctgtattt 181575
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>gb|AF083424.1|AF083424 Ateline herpesvirus 3 complete genome
          Length = 108409

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 151   caaaatttgtttctcttgca 170
             ||||||||||||||||||||
Sbjct: 69810 caaaatttgtttctcttgca 69791
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>gb|AC154526.2| Mus musculus BAC clone RP24-69I14 from 16, complete sequence
          Length = 219420

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 323   tgtggacttgttggaggtgg 342
             ||||||||||||||||||||
Sbjct: 43052 tgtggacttgttggaggtgg 43033



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 323  tgtggacttgttggaggtgg 342
            ||||||||||||||||||||
Sbjct: 9491 tgtggacttgttggaggtgg 9472
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>emb|AL844512.16| Zebrafish DNA sequence from clone DKEY-8M7, complete sequence
          Length = 231383

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 230   tgaatcatgtgaacaagcaa 249
             ||||||||||||||||||||
Sbjct: 77601 tgaatcatgtgaacaagcaa 77620
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>gb|AC140110.2| Mus musculus BAC clone RP23-29H6 from 6, complete sequence
          Length = 214089

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 61     acaacatgtcctctgtattt 80
              ||||||||||||||||||||
Sbjct: 213769 acaacatgtcctctgtattt 213788


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,196,430
Number of Sequences: 3902068
Number of extensions: 6196430
Number of successful extensions: 112163
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 111998
Number of HSP's gapped (non-prelim): 165
length of query: 607
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 584
effective length of database: 17,143,297,704
effective search space: 10011685859136
effective search space used: 10011685859136
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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