ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd19f09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_188605.1| Oryza sativa (japonica cultivar-group), Ozsa8208 predicted mRNA Length = 996 Score = 272 bits (137), Expect = 1e-69 Identities = 293/345 (84%) Strand = Plus / Minus Query: 231 cgagcagcggcacgaacttgagcatgacttggacggcgttcttggcggcgatgtcgatga 290 |||| ||||| ||||| ||||||||||| | ||||||||||| |||||||||| ||| || Sbjct: 952 cgaggagcgggacgaagttgagcatgacgtcgacggcgttctgggcggcgatggcgagga 893 Query: 291 aggtgctggcctcgttcccgagcgcggagcctcccccggcgaggtcggagagcgagcgga 350 | || ||||||||| ||||||| |||||| || || |||||||||||||| ||||||| Sbjct: 892 actcgccggcctcgttgccgagcgaggagccgccgccagcgaggtcggagagggagcgga 833 Query: 351 tggtgaggaacggcaccccctgcgtgtgcgccacgagggccacggcagcgctctccatct 410 ||||||||||||| || | ||| |||||||||||| |||||||| ||||||||||||| Sbjct: 832 tggtgaggaacgggacggcgtgctggtgcgccacgagcgccacggcggcgctctccatct 773 Query: 411 ccacgggggtgcacccgaactgcttgcggaggaactggcggtactcggcgttgtccagga 470 |||| || ||||||||||||| || |||||||| ||||| |||||||||| |||| Sbjct: 772 ccaccggcgtgcacccgaacttggcccgcaggaactgacggtaggcggcgttgtcgagga 713 Query: 471 acacgttggcgctgcagcccttgctgactcgggtgacccgcggcgcgcggggcaggcacg 530 |||||||||||||||| ||| | || || | || |||| |||||| || |||||||||| Sbjct: 712 acacgttggcgctgcaccccctcctcaccctcgtcaccctcggcgcccgcggcaggcacg 653 Query: 531 tcgtggcgttcacgcacgccggcagctccatgccctccagcttct 575 |||| |||||||||||||||||||||||||| ||||| ||||||| Sbjct: 652 tcgtcgcgttcacgcacgccggcagctccatcccctctagcttct 608
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 262 bits (132), Expect = 1e-66 Identities = 285/336 (84%) Strand = Plus / Plus Query: 231 cgagcagcggcacgaacttgagcatgacttggacggcgttcttggcggcgatgtcgatga 290 |||| ||||| ||||| ||||||||||| | ||||||||||| |||||||||| ||| || Sbjct: 7184527 cgaggagcgggacgaagttgagcatgacgtcgacggcgttctgggcggcgatggcgagga 7184586 Query: 291 aggtgctggcctcgttcccgagcgcggagcctcccccggcgaggtcggagagcgagcgga 350 | || ||||||||| ||||||| |||||| || || |||||||||||||| ||||||| Sbjct: 7184587 actcgccggcctcgttgccgagcgaggagccgccgccagcgaggtcggagagggagcgga 7184646 Query: 351 tggtgaggaacggcaccccctgcgtgtgcgccacgagggccacggcagcgctctccatct 410 ||||||||||||| || | ||| |||||||||||| |||||||| ||||||||||||| Sbjct: 7184647 tggtgaggaacgggacggcgtgctggtgcgccacgagcgccacggcggcgctctccatct 7184706 Query: 411 ccacgggggtgcacccgaactgcttgcggaggaactggcggtactcggcgttgtccagga 470 |||| || ||||||||||||| || |||||||| ||||| |||||||||| |||| Sbjct: 7184707 ccaccggcgtgcacccgaacttggcccgcaggaactgacggtaggcggcgttgtcgagga 7184766 Query: 471 acacgttggcgctgcagcccttgctgactcgggtgacccgcggcgcgcggggcaggcacg 530 |||||||||||||||| ||| | || || | || |||| |||||| || |||||||||| Sbjct: 7184767 acacgttggcgctgcaccccctcctcaccctcgtcaccctcggcgcccgcggcaggcacg 7184826 Query: 531 tcgtggcgttcacgcacgccggcagctccatgccct 566 |||| |||||||||||||||||||||||||| |||| Sbjct: 7184827 tcgtcgcgttcacgcacgccggcagctccatcccct 7184862
>dbj|AP001859.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0485D09 Length = 150594 Score = 262 bits (132), Expect = 1e-66 Identities = 285/336 (84%) Strand = Plus / Plus Query: 231 cgagcagcggcacgaacttgagcatgacttggacggcgttcttggcggcgatgtcgatga 290 |||| ||||| ||||| ||||||||||| | ||||||||||| |||||||||| ||| || Sbjct: 79175 cgaggagcgggacgaagttgagcatgacgtcgacggcgttctgggcggcgatggcgagga 79234 Query: 291 aggtgctggcctcgttcccgagcgcggagcctcccccggcgaggtcggagagcgagcgga 350 | || ||||||||| ||||||| |||||| || || |||||||||||||| ||||||| Sbjct: 79235 actcgccggcctcgttgccgagcgaggagccgccgccagcgaggtcggagagggagcgga 79294 Query: 351 tggtgaggaacggcaccccctgcgtgtgcgccacgagggccacggcagcgctctccatct 410 ||||||||||||| || | ||| |||||||||||| |||||||| ||||||||||||| Sbjct: 79295 tggtgaggaacgggacggcgtgctggtgcgccacgagcgccacggcggcgctctccatct 79354 Query: 411 ccacgggggtgcacccgaactgcttgcggaggaactggcggtactcggcgttgtccagga 470 |||| || ||||||||||||| || |||||||| ||||| |||||||||| |||| Sbjct: 79355 ccaccggcgtgcacccgaacttggcccgcaggaactgacggtaggcggcgttgtcgagga 79414 Query: 471 acacgttggcgctgcagcccttgctgactcgggtgacccgcggcgcgcggggcaggcacg 530 |||||||||||||||| ||| | || || | || |||| |||||| || |||||||||| Sbjct: 79415 acacgttggcgctgcaccccctcctcaccctcgtcaccctcggcgcccgcggcaggcacg 79474 Query: 531 tcgtggcgttcacgcacgccggcagctccatgccct 566 |||| |||||||||||||||||||||||||| |||| Sbjct: 79475 tcgtcgcgttcacgcacgccggcagctccatcccct 79510
>gb|AC104275.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1212_C10, complete sequence Length = 138209 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 313 cgcggagcctcccccggcgaggtcggagagcgagcggatggtgaggaacggcaccccctg 372 ||||||||| || |||||||||||||||||||| || |||| || ||||||| ||||||| Sbjct: 111726 cgcggagccgccgccggcgaggtcggagagcgaccgtatggcgatgaacggcgccccctg 111785 Query: 373 c 373 | Sbjct: 111786 c 111786
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 313 cgcggagcctcccccggcgaggtcggagagcgagcggatggtgaggaacggcaccccctg 372 ||||||||| || |||||||||||||||||||| || |||| || ||||||| ||||||| Sbjct: 7675331 cgcggagccgccgccggcgaggtcggagagcgaccgtatggcgatgaacggcgccccctg 7675390 Query: 373 c 373 | Sbjct: 7675391 c 7675391
>dbj|AK101642.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033055L05, full insert sequence Length = 1387 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Minus Query: 313 cgcggagcctcccccggcgaggtcggagagcgagcggatggtgaggaacggcaccccctg 372 ||||||||| || |||||||||||||||||||| || |||| || ||||||| ||||||| Sbjct: 1142 cgcggagccgccgccggcgaggtcggagagcgaccgtatggcgatgaacggcgccccctg 1083 Query: 373 c 373 | Sbjct: 1082 c 1082
>dbj|AK064229.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-104-H04, full insert sequence Length = 1470 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Minus Query: 313 cgcggagcctcccccggcgaggtcggagagcgagcggatggtgaggaacggcaccccctg 372 ||||||||| || |||||||||||||||||||| || |||| || ||||||| ||||||| Sbjct: 1225 cgcggagccgccgccggcgaggtcggagagcgaccgtatggcgatgaacggcgccccctg 1166 Query: 373 c 373 | Sbjct: 1165 c 1165
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 190 gtccgcggccgcgccgtcgtcc 211 |||||||||||||||||||||| Sbjct: 1696642 gtccgcggccgcgccgtcgtcc 1696663
>gb|BC095614.1| Danio rerio NADH dehydrogenase (ubiquinone) Fe-S protein 5, mRNA (cDNA clone MGC:111955 IMAGE:7248997), complete cds Length = 541 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 160 tggacaagtggctgctggctca 181 |||||||||||||||||||||| Sbjct: 110 tggacaagtggctgctggctca 131
>ref|NM_001020633.1| Danio rerio NADH dehydrogenase (ubiquinone) Fe-S protein 5 (ndufs5), mRNA Length = 541 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 160 tggacaagtggctgctggctca 181 |||||||||||||||||||||| Sbjct: 110 tggacaagtggctgctggctca 131
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 190 gtccgcggccgcgccgtcgtcc 211 |||||||||||||||||||||| Sbjct: 3031532 gtccgcggccgcgccgtcgtcc 3031553
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 190 gtccgcggccgcgccgtcgtcc 211 |||||||||||||||||||||| Sbjct: 2180357 gtccgcggccgcgccgtcgtcc 2180378
>emb|CR753876.17| Zebrafish DNA sequence from clone DKEYP-116A7 in linkage group 19, complete sequence Length = 118451 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 160 tggacaagtggctgctggctca 181 |||||||||||||||||||||| Sbjct: 57921 tggacaagtggctgctggctca 57900
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 547 cgccggcagctccatgccctccagc 571 ||||||||| ||||||||||||||| Sbjct: 1926808 cgccggcagatccatgccctccagc 1926832
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 324 ccccggcgaggtcggagagcg 344 ||||||||||||||||||||| Sbjct: 1023950 ccccggcgaggtcggagagcg 1023930
>gb|AC125446.12| Mus musculus chromosome 14, clone RP24-501J23, complete sequence Length = 159722 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 46 ggctcatcaactgtgatttga 66 ||||||||||||||||||||| Sbjct: 140859 ggctcatcaactgtgatttga 140879
>gb|AC144517.7| Medicago truncatula clone mth2-13k17, complete sequence Length = 107710 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 13 atttgttaatttaattcatct 33 ||||||||||||||||||||| Sbjct: 94371 atttgttaatttaattcatct 94351
>gb|AF328738.1|AF328738 Agelaius phoeniceus cosmid Rwcos3, partial sequence Length = 45375 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 310 gagcgcggagcctcccccggc 330 ||||||||||||||||||||| Sbjct: 16121 gagcgcggagcctcccccggc 16101
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 274 ggcggcgatgtcgatgaaggt 294 ||||||||||||||||||||| Sbjct: 4024810 ggcggcgatgtcgatgaaggt 4024830
>ref|XM_469921.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1369 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 cggcgaggtcggagagcgag 346 |||||||||||||||||||| Sbjct: 391 cggcgaggtcggagagcgag 372
>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens 22q11.2 DGCR Region, complete sequence Length = 262062 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 350 atggtgaggaacggcaccccctgc 373 |||||||||||||| ||||||||| Sbjct: 206897 atggtgaggaacgggaccccctgc 206874
>gb|AC131743.3| Mus musculus BAC clone RP23-68K21 from chromosome 13, complete sequence Length = 235930 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 481 gctgcagcccttgctgactc 500 |||||||||||||||||||| Sbjct: 160929 gctgcagcccttgctgactc 160948
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 cggcgaggtcggagagcgag 346 |||||||||||||||||||| Sbjct: 32498522 cggcgaggtcggagagcgag 32498541
>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence Length = 202128 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 350 atggtgaggaacggcaccccctgc 373 |||||||||||||| ||||||||| Sbjct: 193483 atggtgaggaacgggaccccctgc 193460
>gb|AY224542.1| Oryza sativa (japonica cultivar-group) isolate 23484 heavy meromyosin-like protein mRNA, complete cds Length = 1071 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 cggcgaggtcggagagcgag 346 |||||||||||||||||||| Sbjct: 391 cggcgaggtcggagagcgag 372
>ref|XM_534485.2| PREDICTED: Canis familiaris similar to thrombospondin type I domain-containing 1 isoform 1 (LOC477293), mRNA Length = 2824 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 tgtccgcggccgcgccgtcg 208 |||||||||||||||||||| Sbjct: 1777 tgtccgcggccgcgccgtcg 1758
>gb|AC134384.6| Mus musculus strain C57BL/6J clone rp23-393d21, complete sequence Length = 227620 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 350 atggtgaggaacggcaccccctgc 373 |||||||||||||| ||||||||| Sbjct: 210073 atggtgaggaacgggaccccctgc 210096
>gb|AC134383.11| Mus musculus strain C57BL/6J clone rp23-348k4, complete sequence Length = 227587 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 350 atggtgaggaacggcaccccctgc 373 |||||||||||||| ||||||||| Sbjct: 210040 atggtgaggaacgggaccccctgc 210063
>emb|BX063779.1|CNS09LDJ Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC45DC05 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 930 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 233 agcagcggcacgaacttgagcatg 256 |||||||| ||||||||||||||| Sbjct: 646 agcagcggaacgaacttgagcatg 669
>emb|BX538353.1| Cryptosporidium parvum chromosome 6, complete sequence; segment 4/4 Length = 277703 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 cttgattatttgatttgttaattt 24 |||| ||||||||||||||||||| Sbjct: 124434 cttgcttatttgatttgttaattt 124411
>emb|CR786568.9| Zebrafish DNA sequence from clone DKEY-251I10 in linkage group 5, complete sequence Length = 134388 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 tttgatttgttaatttaatt 28 |||||||||||||||||||| Sbjct: 12468 tttgatttgttaatttaatt 12487
>emb|CR352255.9| Zebrafish DNA sequence from clone CH211-118E10 in linkage group 24, complete sequence Length = 161221 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 5 attatttgatttgttaatttaatt 28 ||||||| |||||||||||||||| Sbjct: 146460 attatttaatttgttaatttaatt 146483
>gb|AC163199.8| Mus musculus 6 BAC RP23-333F8 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 233589 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 ccacgagggccacggcagcg 400 |||||||||||||||||||| Sbjct: 131205 ccacgagggccacggcagcg 131186
>emb|BX927204.6| Zebrafish DNA sequence from clone CH211-103B12 in linkage group 23, complete sequence Length = 165759 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 ttatttgatttgttaattta 25 |||||||||||||||||||| Sbjct: 144630 ttatttgatttgttaattta 144649
>emb|BX548162.12| Zebrafish DNA sequence from clone DKEYP-90D11 in linkage group 11, complete sequence Length = 180422 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 2 ttgattatttgatttgttaattta 25 ||||||| |||||||||||||||| Sbjct: 42560 ttgattagttgatttgttaattta 42583
>gb|AC008019.60| Mus musculus strain 129S6/SvEvTac chromosome 16 clone rp21-519i24, complete sequence Length = 189707 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 350 atggtgaggaacggcaccccctgc 373 |||||||||||||| ||||||||| Sbjct: 81926 atggtgaggaacgggaccccctgc 81903
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 cgcgccgtcgtccatctcct 218 |||||||||||||||||||| Sbjct: 1294753 cgcgccgtcgtccatctcct 1294772
>gb|AE012007.1| Xanthomonas axonopodis pv. citri str. 306, section 385 of 469 of the complete genome Length = 10826 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 508 ccgcggcgcgcggggcaggc 527 |||||||||||||||||||| Sbjct: 969 ccgcggcgcgcggggcaggc 950
>gb|AE012392.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 300 of 460 of the complete genome Length = 10825 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 cgcgccgtcgtccatctcct 218 |||||||||||||||||||| Sbjct: 5403 cgcgccgtcgtccatctcct 5384
>dbj|AK147751.1| Mus musculus melanocyte cDNA, RIKEN full-length enriched library, clone:G270023O13 product:ring finger protein 127, full insert sequence Length = 2225 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 508 ccgcggcgcgcggggcaggc 527 |||||||||||||||||||| Sbjct: 811 ccgcggcgcgcggggcaggc 830
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 cgcgccgtcgtccatctcct 218 |||||||||||||||||||| Sbjct: 1603085 cgcgccgtcgtccatctcct 1603104
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 cggcgaggtcggagagcgag 346 |||||||||||||||||||| Sbjct: 32589032 cggcgaggtcggagagcgag 32589051
>gb|AC133574.15| Mus musculus strain C57BL/6J clone rp23-35b9, complete sequence Length = 168432 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 350 atggtgaggaacggcaccccctgc 373 |||||||||||||| ||||||||| Sbjct: 125413 atggtgaggaacgggaccccctgc 125390
>gb|AC087096.11| Oryza sativa chromosome 3 BAC OSJNBa0087O09 genomic sequence, complete sequence Length = 119134 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 cggcgaggtcggagagcgag 346 |||||||||||||||||||| Sbjct: 31971 cggcgaggtcggagagcgag 31990
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 274 ggcggcgatgtcgatgaaggtgct 297 |||| ||||||||||||||||||| Sbjct: 1475942 ggcgacgatgtcgatgaaggtgct 1475965
>dbj|AK071787.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023110P10, full insert sequence Length = 1524 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 cggcgaggtcggagagcgag 346 |||||||||||||||||||| Sbjct: 546 cggcgaggtcggagagcgag 527
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 cgttcttggcggcgatgtcg 286 |||||||||||||||||||| Sbjct: 1199176 cgttcttggcggcgatgtcg 1199195
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 cgcgccgtcgtccatctcct 218 |||||||||||||||||||| Sbjct: 1318531 cgcgccgtcgtccatctcct 1318550
>emb|CR382296.26| Zebrafish DNA sequence from clone DKEY-121H17 in linkage group 21, complete sequence Length = 137360 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 ttatttgatttgttaattta 25 |||||||||||||||||||| Sbjct: 69396 ttatttgatttgttaattta 69415
>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome Length = 4096345 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 9 tttgatttgttaatttaattcatctctg 36 |||||||| ||||||||||| ||||||| Sbjct: 2114614 tttgatttcttaatttaattaatctctg 2114641
>emb|AL845287.10| Zebrafish DNA sequence from clone DKEY-78K11, complete sequence Length = 174301 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 ttatttgatttgttaattta 25 |||||||||||||||||||| Sbjct: 19879 ttatttgatttgttaattta 19898 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,446,743 Number of Sequences: 3902068 Number of extensions: 4446743 Number of successful extensions: 89133 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 51 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87682 Number of HSP's gapped (non-prelim): 1445 length of query: 624 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 601 effective length of database: 17,143,297,704 effective search space: 10303121920104 effective search space used: 10303121920104 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
