ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd19f07 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 63.9 bits (32), Expect = 5e-07 Identities = 53/60 (88%) Strand = Plus / Plus Query: 394 tattttattgaacaattcgcctccagtggtaagcgccatgattgtgtatatttttgtctt 453 |||||||| ||||||||||||||||||| ||||| ||| |||| ||||||| || ||||| Sbjct: 23659481 tattttatcgaacaattcgcctccagtgataagctccaagattatgtatatcttcgtctt 23659540 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/57 (87%), Gaps = 2/57 (3%) Strand = Plus / Plus Query: 475 gtcttacaatctttattattgagatatttcctttttgatctgtcaagaagcatgaga 531 ||||||||||||| |||||||| ||| ||| ||||||||||||||| | ||||||| Sbjct: 23659699 gtcttacaatcttcattattga--tatctcccttttgatctgtcaagtaacatgaga 23659753
>dbj|AP005446.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0029C06 Length = 156500 Score = 63.9 bits (32), Expect = 5e-07 Identities = 53/60 (88%) Strand = Plus / Plus Query: 394 tattttattgaacaattcgcctccagtggtaagcgccatgattgtgtatatttttgtctt 453 |||||||| ||||||||||||||||||| ||||| ||| |||| ||||||| || ||||| Sbjct: 7557 tattttatcgaacaattcgcctccagtgataagctccaagattatgtatatcttcgtctt 7616 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/57 (87%), Gaps = 2/57 (3%) Strand = Plus / Plus Query: 475 gtcttacaatctttattattgagatatttcctttttgatctgtcaagaagcatgaga 531 ||||||||||||| |||||||| ||| ||| ||||||||||||||| | ||||||| Sbjct: 7775 gtcttacaatcttcattattga--tatctcccttttgatctgtcaagtaacatgaga 7829
>dbj|AP003629.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0481H08 Length = 146841 Score = 63.9 bits (32), Expect = 5e-07 Identities = 53/60 (88%) Strand = Plus / Plus Query: 394 tattttattgaacaattcgcctccagtggtaagcgccatgattgtgtatatttttgtctt 453 |||||||| ||||||||||||||||||| ||||| ||| |||| ||||||| || ||||| Sbjct: 140445 tattttatcgaacaattcgcctccagtgataagctccaagattatgtatatcttcgtctt 140504 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/57 (87%), Gaps = 2/57 (3%) Strand = Plus / Plus Query: 475 gtcttacaatctttattattgagatatttcctttttgatctgtcaagaagcatgaga 531 ||||||||||||| |||||||| ||| ||| ||||||||||||||| | ||||||| Sbjct: 140663 gtcttacaatcttcattattga--tatctcccttttgatctgtcaagtaacatgaga 140717
>dbj|AK102270.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033088P20, full insert sequence Length = 1916 Score = 63.9 bits (32), Expect = 5e-07 Identities = 53/60 (88%) Strand = Plus / Minus Query: 394 tattttattgaacaattcgcctccagtggtaagcgccatgattgtgtatatttttgtctt 453 |||||||| ||||||||||||||||||| ||||| ||| |||| ||||||| || ||||| Sbjct: 420 tattttatcgaacaattcgcctccagtgataagctccaagattatgtatatcttcgtctt 361
>gb|DQ248963.1| Oryza sativa (indica cultivar-group) serine/threonine kinase mRNA, complete cds Length = 1362 Score = 63.9 bits (32), Expect = 5e-07 Identities = 53/60 (88%) Strand = Plus / Minus Query: 394 tattttattgaacaattcgcctccagtggtaagcgccatgattgtgtatatttttgtctt 453 |||||||| ||||||||||||||||||| ||||| ||| |||| ||||||| || ||||| Sbjct: 321 tattttatcgaacaattcgcctccagtgataagctccaagattatgtatatcttcgtctt 262
>emb|AL133347.28| Human DNA sequence from clone RP1-274L14 on chromosome 6q25.2-26 Contains part of a novel gene, a signal recognition particle 72kD (SRP72) pseudogene and three CpG islands, complete sequence Length = 100732 Score = 48.1 bits (24), Expect = 0.031 Identities = 24/24 (100%) Strand = Plus / Minus Query: 438 tgtatatttttgtcttgttttgtg 461 |||||||||||||||||||||||| Sbjct: 1407 tgtatatttttgtcttgttttgtg 1384
>ref|XM_640139.1| Dictyostelium discoideum putative GlcNAc transferase (DDB0231460), partial mRNA Length = 1464 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 319 ataaacctgttaaaattgcacat 341 ||||||||||||||||||||||| Sbjct: 554 ataaacctgttaaaattgcacat 576
>gb|AC116963.2| Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence Length = 257109 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 319 ataaacctgttaaaattgcacat 341 ||||||||||||||||||||||| Sbjct: 25717 ataaacctgttaaaattgcacat 25695
>gb|AC105155.9| Mus musculus chromosome 3, clone RP24-346C8, complete sequence Length = 162298 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 437 gtgtatatttttgtcttgttttgtgac 463 |||||||||||||| |||||||||||| Sbjct: 6058 gtgtatatttttgttttgttttgtgac 6032
>gb|AC102373.13| Mus musculus chromosome 3, clone RP23-263O17, complete sequence Length = 198848 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 437 gtgtatatttttgtcttgttttgtgac 463 |||||||||||||| |||||||||||| Sbjct: 195434 gtgtatatttttgttttgttttgtgac 195408
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 193 ccagttgtccttgtgcagctcc 214 |||||||||||||||||||||| Sbjct: 4600730 ccagttgtccttgtgcagctcc 4600709
>gb|AY010120.2| Xanthomonas oryzae pv. oryzae xanthomonadin biosynthetic gene cluster, partial seqence Length = 20310 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 193 ccagttgtccttgtgcagctcc 214 |||||||||||||||||||||| Sbjct: 17599 ccagttgtccttgtgcagctcc 17578
>gb|AE012059.1| Xanthomonas axonopodis pv. citri str. 306, section 437 of 469 of the complete genome Length = 12463 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 193 ccagttgtccttgtgcagctcc 214 |||||||||||||||||||||| Sbjct: 5769 ccagttgtccttgtgcagctcc 5748
>gb|AC127279.3| Mus musculus BAC clone RP24-247K4 from chromosome 10, complete sequence Length = 185573 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Minus Query: 380 ttaactactcaacatattttattgaa 405 ||||||||||| |||||||||||||| Sbjct: 144005 ttaactactcagcatattttattgaa 143980
>gb|AC012445.6| Homo sapiens BAC clone RP11-86A21 from 2, complete sequence Length = 203428 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Plus Query: 322 aacctgttaaaattgcacattttttg 347 ||||||||||||||||||||| |||| Sbjct: 34230 aacctgttaaaattgcacattctttg 34255
>gb|CP000021.1| Vibrio fischeri ES114 chromosome II, complete sequence Length = 1332022 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 270 atatggaaaatggtgcttgttt 291 |||||||||||||||||||||| Sbjct: 120459 atatggaaaatggtgcttgttt 120480
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 193 ccagttgtccttgtgcagctcc 214 |||||||||||||||||||||| Sbjct: 4605493 ccagttgtccttgtgcagctcc 4605472
>gb|AC104716.4| Homo sapiens chromosome 8 clone RP11-81A21 map q24.13, complete sequence Length = 147651 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 82 gggggagaacaacaactaata 102 ||||||||||||||||||||| Sbjct: 123125 gggggagaacaacaactaata 123145
>gb|AF216671.7| Homo sapiens chromosome 8 clone RP11-300I14 map q24.13, complete sequence Length = 183027 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 82 gggggagaacaacaactaata 102 ||||||||||||||||||||| Sbjct: 100737 gggggagaacaacaactaata 100757
>gb|AC133331.3| Homo sapiens chromosome 8 clone RP11-156O22 map q24.13, complete sequence Length = 174972 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 82 gggggagaacaacaactaata 102 ||||||||||||||||||||| Sbjct: 85210 gggggagaacaacaactaata 85230
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 193 ccagttgtccttgtgcagctc 213 ||||||||||||||||||||| Sbjct: 4806380 ccagttgtccttgtgcagctc 4806360
>gb|AC127251.4| Mus musculus BAC clone RP24-482M10 from chromosome 9, complete sequence Length = 185420 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 436 tgtgtatatttttgtcttgttttgt 460 ||||||||||||||| ||||||||| Sbjct: 177566 tgtgtatatttttgttttgttttgt 177590
>gb|AC125523.4| Mus musculus BAC clone RP24-376O18 from chromosome 15, complete sequence Length = 176341 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 440 tatatttttgtcttgttttgt 460 ||||||||||||||||||||| Sbjct: 26381 tatatttttgtcttgttttgt 26401
>gb|AC127325.4| Mus musculus BAC clone RP23-250E15 from 9, complete sequence Length = 160846 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 436 tgtgtatatttttgtcttgttttgt 460 ||||||||||||||| ||||||||| Sbjct: 99596 tgtgtatatttttgttttgttttgt 99572
>gb|AC145021.14| Medicago truncatula clone mth2-23a16, complete sequence Length = 119096 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 480 acaatctttattattgagata 500 ||||||||||||||||||||| Sbjct: 92769 acaatctttattattgagata 92749
>gb|AC130798.15| Medicago truncatula clone mth2-27f17, complete sequence Length = 92189 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 480 acaatctttattattgagata 500 ||||||||||||||||||||| Sbjct: 31493 acaatctttattattgagata 31473
>emb|AL138707.10| Human DNA sequence from clone RP11-430M15 on chromosome 13 Contains the 3' end of a novel gene (FLJ22153) and the 3' end of the gene for a novel protein (ortholog of rat putative four repeat ion channel), complete sequence Length = 181311 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 89 aacaacaactaatattctttt 109 ||||||||||||||||||||| Sbjct: 48938 aacaacaactaatattctttt 48918
>gb|AC117633.6| Mus musculus, clone RP23-200C8, complete sequence Length = 224221 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 441 atatttttgtcttgttttgtg 461 ||||||||||||||||||||| Sbjct: 208372 atatttttgtcttgttttgtg 208392
>gb|AC160559.5| Mus musculus BAC clone RP24-404N24 from chromosome 10, complete sequence Length = 157670 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 440 tatatttttgtcttgttttgt 460 ||||||||||||||||||||| Sbjct: 26594 tatatttttgtcttgttttgt 26614
>emb|BX936335.6| Zebrafish DNA sequence from clone CH211-287C12 in linkage group 3, complete sequence Length = 62086 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 328 ttaaaattgcacattttttgcacca 352 |||||||||||||||| |||||||| Sbjct: 5867 ttaaaattgcacatttattgcacca 5891
>gb|AC009908.13| Homo sapiens chromosome 8, clone RP11-6D1, complete sequence Length = 174981 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 82 gggggagaacaacaactaata 102 ||||||||||||||||||||| Sbjct: 85217 gggggagaacaacaactaata 85237
>emb|CR381657.7| Zebrafish DNA sequence from clone CH211-229L10, complete sequence Length = 140774 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 438 tgtatatttttgtcttgtttt 458 ||||||||||||||||||||| Sbjct: 100959 tgtatatttttgtcttgtttt 100979
>gb|AC099771.9| Mus Musculus Strain C57BL6/J chromosome 5 BAC, RP23-72621, Complete Sequence, complete sequence Length = 256933 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 486 tttattattgagatatttccttttt 510 ||||||||||| ||||||||||||| Sbjct: 156781 tttattattgaaatatttccttttt 156757
>gb|AC156035.5| Mus musculus BAC clone RP23-302M20 from chromosome 12, complete sequence Length = 187168 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 438 tgtatatttttgtcttgtttt 458 ||||||||||||||||||||| Sbjct: 133511 tgtatatttttgtcttgtttt 133531
>gb|AC009958.3| Homo sapiens BAC clone RP11-316G9 from 2, complete sequence Length = 211201 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 340 attttttgcaccaactttgttaaaa 364 ||||||| ||||||||||||||||| Sbjct: 149973 atttttttcaccaactttgttaaaa 149949
>gb|AC110080.2| Homo sapiens BAC clone RP11-421K23 from 2, complete sequence Length = 172465 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 340 attttttgcaccaactttgttaaaa 364 ||||||| ||||||||||||||||| Sbjct: 77298 atttttttcaccaactttgttaaaa 77274
>emb|BX511214.8| Zebrafish DNA sequence from clone DKEY-191C11, complete sequence Length = 211331 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 432 tgattgtgtatatttttgtcttgttttgt 460 ||||||||| ||||||||||| ||||||| Sbjct: 62206 tgattgtgtctatttttgtctagttttgt 62178
>gb|AC110216.10| Mus musculus chromosome 18, clone RP24-502I6, complete sequence Length = 201138 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 441 atatttttgtcttgttttgtg 461 ||||||||||||||||||||| Sbjct: 117406 atatttttgtcttgttttgtg 117426
>dbj|AP000977.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-730K11, complete sequence Length = 187080 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 196 gttgtccttgtgcagctccca 216 ||||||||||||||||||||| Sbjct: 78368 gttgtccttgtgcagctccca 78388
>gb|AC134244.4| Mus musculus BAC clone RP24-218O13 from 14, complete sequence Length = 220538 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 443 atttttgtcttgttttgtgac 463 ||||||||||||||||||||| Sbjct: 141098 atttttgtcttgttttgtgac 141118
>ref|NG_000834.1| Homo sapiens immunoglobulin kappa locus, proximal V-cluster and J-C cluster (IGK-proximal) on chromosome 2 Length = 515442 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 340 attttttgcaccaactttgttaaaa 364 ||||||| ||||||||||||||||| Sbjct: 105937 atttttttcaccaactttgttaaaa 105961
>ref|NG_000833.1| Homo sapiens immunoglobulin kappa locus, distal duplicated V-cluster (IGK-distal) on chromosome 2 Length = 407661 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 340 attttttgcaccaactttgttaaaa 364 ||||||| ||||||||||||||||| Sbjct: 302170 atttttttcaccaactttgttaaaa 302146
>gb|AC168058.4| Mus musculus BAC clone RP24-134D11 from chromosome 10, complete sequence Length = 199406 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 440 tatatttttgtcttgttttgt 460 ||||||||||||||||||||| Sbjct: 89099 tatatttttgtcttgttttgt 89079
>emb|AL669966.10| Mouse DNA sequence from clone RP23-174K9 on chromosome 4, complete sequence Length = 199890 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 298 acatacatgcatggtcaccat 318 ||||||||||||||||||||| Sbjct: 49417 acatacatgcatggtcaccat 49397
>dbj|AP001226.3| Homo sapiens genomic DNA, chromosome 2p11.2, clone:cos237 Length = 33101 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 340 attttttgcaccaactttgttaaaa 364 ||||||| ||||||||||||||||| Sbjct: 11921 atttttttcaccaactttgttaaaa 11897
>dbj|AP001224.3| Homo sapiens genomic DNA, chromosome 2p11.2, clone:cos211 Length = 39042 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 340 attttttgcaccaactttgttaaaa 364 ||||||| ||||||||||||||||| Sbjct: 12048 atttttttcaccaactttgttaaaa 12072
>gb|AC108442.6| Mus musculus chromosome 8, clone RP23-242M14, complete sequence Length = 209618 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 atggaaaatggtgcttgttt 291 |||||||||||||||||||| Sbjct: 149892 atggaaaatggtgcttgttt 149911
>gb|AC120527.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0011J22 map R10571S, complete sequence Length = 154441 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 486 tttattattgagatatttcctttt 509 |||||||| ||||||||||||||| Sbjct: 134911 tttattatagagatatttcctttt 134934
>gb|U55376.1| Caenorhabditis elegans cosmid F16H11, complete sequence Length = 31049 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 atttttgtcttgttttgtga 462 |||||||||||||||||||| Sbjct: 21467 atttttgtcttgttttgtga 21486
>gb|BC029030.1| Mus musculus RIKEN cDNA 2610024E20 gene, mRNA (cDNA clone IMAGE:4951363), complete cds Length = 2794 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 taaaaatacattatgaatga 379 |||||||||||||||||||| Sbjct: 2220 taaaaatacattatgaatga 2201
>gb|AC123741.9| Mus musculus chromosome 1, clone RP24-113A5, complete sequence Length = 188453 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 ttaggatatacaatggggat 81 |||||||||||||||||||| Sbjct: 101559 ttaggatatacaatggggat 101540
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 ccttcaacaactatgagctt 246 |||||||||||||||||||| Sbjct: 4008019 ccttcaacaactatgagctt 4008038
>emb|AJ966993.1| Lotus corniculatus var. japonicus TY3-gypsy retrotransposon LORE1d Length = 5521 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 485 ctttattattgagatatttc 504 |||||||||||||||||||| Sbjct: 5417 ctttattattgagatatttc 5398
>gb|AC144916.3| Homo sapiens BAC clone RP11-15L7 from UL, complete sequence Length = 158759 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 348 caccaactttgttaaaaata 367 |||||||||||||||||||| Sbjct: 6772 caccaactttgttaaaaata 6753
>gb|AC113096.12| Mus musculus chromosome 14, clone RP23-312M23, complete sequence Length = 224556 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 487 ttattattgagatatttccttttt 510 ||||||||||| |||||||||||| Sbjct: 92130 ttattattgaggtatttccttttt 92153
>gb|AC115305.4| Mus musculus BAC clone RP24-372L1 from 18, complete sequence Length = 155389 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 taaaaatacattatgaatga 379 |||||||||||||||||||| Sbjct: 100478 taaaaatacattatgaatga 100459
>gb|AC122520.2| Mus musculus BAC clone RP24-470M22 from 6, complete sequence Length = 153520 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 484 tctttattattgagatattt 503 |||||||||||||||||||| Sbjct: 138784 tctttattattgagatattt 138765
>gb|AC006204.1| Homo sapiens PAC clone RP5-1102B4 from 7, complete sequence Length = 144563 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 434 attgtgtatatttttgtctt 453 |||||||||||||||||||| Sbjct: 64231 attgtgtatatttttgtctt 64250
>gb|AC136717.10| Mus musculus chromosome 7, clone RP23-48C24, complete sequence Length = 222854 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 ccagttgtccttgtgcagct 212 |||||||||||||||||||| Sbjct: 58861 ccagttgtccttgtgcagct 58842
>gb|AC108435.5| Mus musculus chromosome 7, clone RP23-229O20, complete sequence Length = 203281 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 ccagttgtccttgtgcagct 212 |||||||||||||||||||| Sbjct: 181471 ccagttgtccttgtgcagct 181452
>emb|AL355312.24| Human DNA sequence from clone RP11-350J20 on chromosome 6 Contains gene FLJ13287, the PCMT1 gene for protein-L-isoaspartate (D-aspartate) O-methyltransferase,gene FLJ14735, a novel pseudogene, a novel gene, t-complex 1 (TCP1) pseudogene, the gene for lymphocyte effector toxicity activation ligand (LETAL), the 5' end of a novel gene, a novel pseudogene similar to FLJ13465 and four CpG islands, complete sequence Length = 188684 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 352 aactttgttaaaaatacatt 371 |||||||||||||||||||| Sbjct: 137648 aactttgttaaaaatacatt 137667
>gb|AC144523.2| Homo sapiens BAC clone RP11-1302F12 from UL, complete sequence Length = 190427 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 493 ttgagatatttcctttttga 512 |||||||||||||||||||| Sbjct: 40196 ttgagatatttcctttttga 40177
>emb|AL157886.13| Human DNA sequence from clone RP11-59M22 on chromosome 9q21.31-21.33, complete sequence Length = 156956 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 atttttgtcttgttttgtga 462 |||||||||||||||||||| Sbjct: 54026 atttttgtcttgttttgtga 54045
>gb|AC125790.2| Homo sapiens chromosome 5 clone CTD-2263N8, complete sequence Length = 106412 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 491 tattgagatatttccttttt 510 |||||||||||||||||||| Sbjct: 3507 tattgagatatttccttttt 3526
>emb|CR925723.7| Zebrafish DNA sequence from clone RP71-81E14, complete sequence Length = 157989 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 439 gtatatttttgtcttgtttt 458 |||||||||||||||||||| Sbjct: 113666 gtatatttttgtcttgtttt 113685 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 439 gtatatttttgtcttgtttt 458 |||||||||||||||||||| Sbjct: 111480 gtatatttttgtcttgtttt 111499
>gb|AC069417.19| Homo sapiens 3 BAC RP11-385K11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 107000 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 ctgttaaaattgcacatttt 344 |||||||||||||||||||| Sbjct: 97651 ctgttaaaattgcacatttt 97670
>emb|CR759748.6| Zebrafish DNA sequence from clone DKEYP-118G11 in linkage group 17, complete sequence Length = 165743 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 aaaattgcacattttttgca 349 |||||||||||||||||||| Sbjct: 74625 aaaattgcacattttttgca 74606
>emb|CR392365.8| Zebrafish DNA sequence from clone DKEY-171P17 in linkage group 5, complete sequence Length = 168716 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 aaaattgcacattttttgca 349 |||||||||||||||||||| Sbjct: 72676 aaaattgcacattttttgca 72657
>emb|BX537340.15| Zebrafish DNA sequence from clone DKEYP-93A2 in linkage group 7, complete sequence Length = 192070 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 aattgcacattttttgcacc 351 |||||||||||||||||||| Sbjct: 50469 aattgcacattttttgcacc 50450
>gb|AC104301.2| Homo sapiens chromosome 3 clone RP11-150N22, complete sequence Length = 189610 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 487 ttattattgagatatttccttttt 510 |||||||||||| ||||||||||| Sbjct: 65846 ttattattgagacatttccttttt 65869
>dbj|AK160210.1| Mus musculus 10 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2610024E20 product:hypothetical protein, full insert sequence Length = 1967 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 taaaaatacattatgaatga 379 |||||||||||||||||||| Sbjct: 1415 taaaaatacattatgaatga 1396
>emb|BX663607.13| Zebrafish DNA sequence from clone DKEY-30P18 in linkage group 6, complete sequence Length = 216068 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 439 gtatatttttgtcttgtttt 458 |||||||||||||||||||| Sbjct: 94208 gtatatttttgtcttgtttt 94227 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 439 gtatatttttgtcttgtttt 458 |||||||||||||||||||| Sbjct: 90481 gtatatttttgtcttgtttt 90500
>gb|AE008561.1|AE008561 Streptococcus pneumoniae R6 section 177 of 184 of the complete genome Length = 11070 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 391 acatattttattgaacaatt 410 |||||||||||||||||||| Sbjct: 3589 acatattttattgaacaatt 3570
>emb|BX664603.6| Zebrafish DNA sequence from clone CH211-127L8 in linkage group 7, complete sequence Length = 190963 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 487 ttattattgagatatttccttttt 510 ||||||||||||||||| |||||| Sbjct: 148437 ttattattgagatattttcttttt 148414
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 486 tttattattgagatatttcctttt 509 |||||||| ||||||||||||||| Sbjct: 3180074 tttattatagagatatttcctttt 3180051
>emb|AL928985.24| Mouse DNA sequence from clone RP23-477P11 on chromosome 2, complete sequence Length = 83772 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 aatggggatgggggagaaca 92 |||||||||||||||||||| Sbjct: 45494 aatggggatgggggagaaca 45475
>gb|AC087593.6| Homo sapiens chromosome 15, clone RP11-247E14, complete sequence Length = 124394 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 384 ctactcaacatattttattg 403 |||||||||||||||||||| Sbjct: 51371 ctactcaacatattttattg 51352
>emb|AL954309.11| Zebrafish DNA sequence from clone CH211-213D2 in linkage group 8, complete sequence Length = 209195 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 aattgcacattttttgcacc 351 |||||||||||||||||||| Sbjct: 144914 aattgcacattttttgcacc 144895
>gb|AC125788.2| Homo sapiens chromosome 5 clone CTD-2169H20, complete sequence Length = 109999 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 tattgagatatttccttttt 510 |||||||||||||||||||| Sbjct: 14098 tattgagatatttccttttt 14079
>emb|BX255907.8| Zebrafish DNA sequence from clone DKEY-4P13 in linkage group 2, complete sequence Length = 252614 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 gttaaaattgcacatttttt 346 |||||||||||||||||||| Sbjct: 200566 gttaaaattgcacatttttt 200585
>emb|BX640579.10| Zebrafish DNA sequence from clone CH211-266K5 in linkage group 19, complete sequence Length = 168768 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 acaagatagatccttcaaca 235 |||||||||||||||||||| Sbjct: 55040 acaagatagatccttcaaca 55021
>emb|BX470256.11| Zebrafish DNA sequence from clone CH211-279A3 in linkage group 20, complete sequence Length = 172236 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 tatatttttgtcttgttttg 459 |||||||||||||||||||| Sbjct: 156160 tatatttttgtcttgttttg 156141
>emb|BX248118.10| Zebrafish DNA sequence from clone DKEY-100H21 in linkage group 20, complete sequence Length = 192753 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 440 tatatttttgtcttgttttg 459 |||||||||||||||||||| Sbjct: 17095 tatatttttgtcttgttttg 17114
>emb|BX322614.3| Zebrafish DNA sequence from clone CH211-215G1 in linkage group 16, complete sequence Length = 199783 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 tgtttggatggacatacatg 306 |||||||||||||||||||| Sbjct: 99581 tgtttggatggacatacatg 99600
>emb|Z83239.1|CET09F5 Caenorhabditis elegans Cosmid T09F5, complete sequence Length = 37512 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 343 ttttgcaccaactttgttaaaaat 366 ||||||||||| |||||||||||| Sbjct: 9958 ttttgcaccaaatttgttaaaaat 9981
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 486 tttattattgagatatttcctttt 509 |||||||| ||||||||||||||| Sbjct: 3188779 tttattatagagatatttcctttt 3188756
>emb|CR974484.9| Mouse DNA sequence from clone RP23-1D11 on chromosome 12, complete sequence Length = 203805 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 223 agatccttcaacaactatga 242 |||||||||||||||||||| Sbjct: 116898 agatccttcaacaactatga 116917
>gb|AC133437.2| Homo sapiens X BAC RP11-712B14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 75967 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 388 tcaacatattttattgaacaattc 411 |||||||||||||||| ||||||| Sbjct: 56522 tcaacatattttattgcacaattc 56545
>emb|AL592545.10| Mouse DNA sequence from clone RP23-374H24 on chromosome 11, complete sequence Length = 142565 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 444 tttttgtcttgttttgtgac 463 |||||||||||||||||||| Sbjct: 78293 tttttgtcttgttttgtgac 78274 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,137,852 Number of Sequences: 3902068 Number of extensions: 7137852 Number of successful extensions: 170408 Number of sequences better than 10.0: 89 Number of HSP's better than 10.0 without gapping: 89 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 169360 Number of HSP's gapped (non-prelim): 1045 length of query: 555 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 532 effective length of database: 17,143,297,704 effective search space: 9120234378528 effective search space used: 9120234378528 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
