ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd18p24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC078891.2| Oryza sativa (japonica cultivar-group) chromosome... 107 3e-20
2gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome... 107 3e-20
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 107 3e-20
4gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 107 3e-20
5ref|NM_194601.1| Oryza sativa (japonica cultivar-group) putative... 100 6e-18
6gb|DQ377064.1| Oryza sativa (japonica cultivar-group) U1 small n... 100 6e-18
7gb|DQ377063.1| Oryza sativa (japonica cultivar-group) U1 small n... 100 6e-18
8gb|DQ377062.1| Oryza sativa (japonica cultivar-group) U1 small n... 100 6e-18
9dbj|AK100686.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 6e-18
10dbj|AK059504.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 6e-18
11dbj|AK121007.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 2e-15
12gb|AY627768.1| Zea mays U1 snRNP mRNA, complete cds; alternative... 76 9e-11
13gb|AY627767.1| Zea mays U1 snRNP mRNA, complete cds; alternative... 76 9e-11
14gb|AY627766.1| Zea mays U1 snRNP mRNA, complete cds; alternative... 76 9e-11
15gb|AY627765.1| Zea mays U1 snRNP gene, complete cds; alternative... 76 9e-11
16gb|AY108570.1| Zea mays PCO063456 mRNA sequence 76 9e-11
17gb|AC146428.3| Pan troglodytes BAC clone RP43-22M18 from 7, comp... 42 1.3
18gb|AC095039.3| Homo sapiens BAC clone RP11-12G8 from 7, complete... 42 1.3
19emb|AL031589.10|HS11O7 Human DNA sequence from clone RP6-11O7 on... 42 1.3
20emb|CR627316.1| Homo sapiens genomic DNA; cDNA DKFZp686O11128 (f... 42 1.3
21ref|XM_482855.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.0
22ref|XM_507589.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 5.0
23ref|XM_507265.2| PREDICTED Oryza sativa (japonica cultivar-group... 40 5.0
24ref|XM_653456.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 5.0
25gb|AC091458.5| Mus musculus chromosome 12, clone RP23-68M8, comp... 40 5.0
26emb|X14112.1|HE1CG Human herpesvirus 1 complete genome 40 5.0
27gb|AC116596.3| Mus musculus BAC clone RP24-335P21 from chromosom... 40 5.0
28dbj|AB252867.1| Human herpesvirus 1 UL34 gene for virion protein... 40 5.0
29gb|BC112443.1| Bos taurus cDNA clone IMAGE:7987099, with apparen... 40 5.0
30dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
31gb|AC108938.3| Homo sapiens BAC clone RP11-701A10 from 2, comple... 40 5.0
32gb|AE009499.1| Brucella melitensis 16M chromosome I, section 56 ... 40 5.0
33gb|AC155299.2| Mus musculus BAC clone RP24-229D17 from chromosom... 40 5.0
34gb|AC013271.4| Homo sapiens BAC clone RP11-385J6 from 2, complet... 40 5.0
35gb|AC112229.4| Homo sapiens BAC clone RP13-1039J1 from 2, comple... 40 5.0
36dbj|AP006461.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
37dbj|AP004585.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
38ref|XM_557151.1| Anopheles gambiae str. PEST ENSANGP00000028277 ... 40 5.0
39ref|XM_316511.2| Anopheles gambiae str. PEST ENSANGP00000013488 ... 40 5.0
40dbj|AK105607.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.0
41dbj|AK102279.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.0
42dbj|AK070501.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.0
43emb|BX908754.8| Zebrafish DNA sequence from clone DKEY-196D8 in ... 40 5.0
44gb|U71217.1|HSU71217 Human clone c15H12, 24Kb distal CMT1A-REP s... 40 5.0
45gb|AC005224.1|AC005224 Homo sapiens chromosome 17, clone hRPK.21... 40 5.0
46gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 40 5.0
47emb|AL591207.15| Mouse DNA sequence from clone RP23-392O3 on chr... 40 5.0 
>gb|AC078891.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0092N12, complete sequence
          Length = 109198

 Score =  107 bits (54), Expect = 3e-20
 Identities = 132/158 (83%), Gaps = 4/158 (2%)
 Strand = Plus / Minus

                                                                         
Query: 56    aaaacttactgcagnaatnaagcttcagtcttt-tgctcttctgctgcttggtgatactg 114
             |||||||||||||| ||| ||  ||||||  || ||||| || || ||||||||||||||
Sbjct: 15486 aaaacttactgcagcaatcaaatttcagttattgtgctcatcagcagcttggtgatactg 15427

                                                                         
Query: 115   gtagncaccttcctcgtatgcctnaccttcctcagggccttcaggttctgngttg---gg 171
             |||| ||||||| || |||||||  || || ||||||||||||||||||| ||||   ||
Sbjct: 15426 gtagtcaccttcatcatatgcctcgccctcttcagggccttcaggttctgtgttgttagg 15367

                                                   
Query: 172   ttgtgcctgatantactcatgctcatgtctctttgagc 209
             |||   |||||| |||||||||||||||| ||||||||
Sbjct: 15366 ttgcatctgatagtactcatgctcatgtcgctttgagc 15329
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>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
              Pseudo10p0.0-10p4.4, complete sequence
          Length = 2331000

 Score =  107 bits (54), Expect = 3e-20
 Identities = 132/158 (83%), Gaps = 4/158 (2%)
 Strand = Plus / Plus

                                                                          
Query: 56     aaaacttactgcagnaatnaagcttcagtcttt-tgctcttctgctgcttggtgatactg 114
              |||||||||||||| ||| ||  ||||||  || ||||| || || ||||||||||||||
Sbjct: 987068 aaaacttactgcagcaatcaaatttcagttattgtgctcatcagcagcttggtgatactg 987127

                                                                          
Query: 115    gtagncaccttcctcgtatgcctnaccttcctcagggccttcaggttctgngttg---gg 171
              |||| ||||||| || |||||||  || || ||||||||||||||||||| ||||   ||
Sbjct: 987128 gtagtcaccttcatcatatgcctcgccctcttcagggccttcaggttctgtgttgttagg 987187

                                                    
Query: 172    ttgtgcctgatantactcatgctcatgtctctttgagc 209
              |||   |||||| |||||||||||||||| ||||||||
Sbjct: 987188 ttgcatctgatagtactcatgctcatgtcgctttgagc 987225
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10,
              complete sequence
          Length = 22685906

 Score =  107 bits (54), Expect = 3e-20
 Identities = 132/158 (83%), Gaps = 4/158 (2%)
 Strand = Plus / Plus

                                                                          
Query: 56     aaaacttactgcagnaatnaagcttcagtcttt-tgctcttctgctgcttggtgatactg 114
              |||||||||||||| ||| ||  ||||||  || ||||| || || ||||||||||||||
Sbjct: 987068 aaaacttactgcagcaatcaaatttcagttattgtgctcatcagcagcttggtgatactg 987127

                                                                          
Query: 115    gtagncaccttcctcgtatgcctnaccttcctcagggccttcaggttctgngttg---gg 171
              |||| ||||||| || |||||||  || || ||||||||||||||||||| ||||   ||
Sbjct: 987128 gtagtcaccttcatcatatgcctcgccctcttcagggccttcaggttctgtgttgttagg 987187

                                                    
Query: 172    ttgtgcctgatantactcatgctcatgtctctttgagc 209
              |||   |||||| |||||||||||||||| ||||||||
Sbjct: 987188 ttgcatctgatagtactcatgctcatgtcgctttgagc 987225
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  107 bits (54), Expect = 3e-20
 Identities = 132/158 (83%), Gaps = 4/158 (2%)
 Strand = Plus / Plus

                                                                          
Query: 56     aaaacttactgcagnaatnaagcttcagtcttt-tgctcttctgctgcttggtgatactg 114
              |||||||||||||| ||| ||  ||||||  || ||||| || || ||||||||||||||
Sbjct: 987065 aaaacttactgcagcaatcaaatttcagttattgtgctcatcagcagcttggtgatactg 987124

                                                                          
Query: 115    gtagncaccttcctcgtatgcctnaccttcctcagggccttcaggttctgngttg---gg 171
              |||| ||||||| || |||||||  || || ||||||||||||||||||| ||||   ||
Sbjct: 987125 gtagtcaccttcatcatatgcctcgccctcttcagggccttcaggttctgtgttgttagg 987184

                                                    
Query: 172    ttgtgcctgatantactcatgctcatgtctctttgagc 209
              |||   |||||| |||||||||||||||| ||||||||
Sbjct: 987185 ttgcatctgatagtactcatgctcatgtcgctttgagc 987222
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>ref|NM_194601.1| Oryza sativa (japonica cultivar-group) putative U1 small nuclear
            ribonucleoprotein (OSJNBa0092N12.2), mRNA
          Length = 1476

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 96/112 (85%), Gaps = 3/112 (2%)
 Strand = Plus / Minus

                                                                        
Query: 101  gcttggtgatactggtagncaccttcctcgtatgcctnaccttcctcagggccttcaggt 160
            |||||||||||||||||| ||||||| || |||||||  || || |||||||||||||||
Sbjct: 1454 gcttggtgatactggtagtcaccttcatcatatgcctcgccctcttcagggccttcaggt 1395

                                                                
Query: 161  tctgngttg---ggttgtgcctgatantactcatgctcatgtctctttgagc 209
            |||| ||||   |||||   |||||| |||||||||||||||| ||||||||
Sbjct: 1394 tctgtgttgttaggttgcatctgatagtactcatgctcatgtcgctttgagc 1343
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>gb|DQ377064.1| Oryza sativa (japonica cultivar-group) U1 small nuclear
            ribonucleoprotein 70K splice variant 2 mRNA, complete
            cds, alternatively spliced
          Length = 3284

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 96/112 (85%), Gaps = 3/112 (2%)
 Strand = Plus / Minus

                                                                        
Query: 101  gcttggtgatactggtagncaccttcctcgtatgcctnaccttcctcagggccttcaggt 160
            |||||||||||||||||| ||||||| || |||||||  || || |||||||||||||||
Sbjct: 2924 gcttggtgatactggtagtcaccttcatcatatgcctcgccctcttcagggccttcaggt 2865

                                                                
Query: 161  tctgngttg---ggttgtgcctgatantactcatgctcatgtctctttgagc 209
            |||| ||||   |||||   |||||| |||||||||||||||| ||||||||
Sbjct: 2864 tctgtgttgttaggttgcatctgatagtactcatgctcatgtcgctttgagc 2813
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>gb|DQ377063.1| Oryza sativa (japonica cultivar-group) U1 small nuclear
            ribonucleoprotein 70K splice variant 1 mRNA, complete
            cds, alternatively spliced
          Length = 3443

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 96/112 (85%), Gaps = 3/112 (2%)
 Strand = Plus / Minus

                                                                        
Query: 101  gcttggtgatactggtagncaccttcctcgtatgcctnaccttcctcagggccttcaggt 160
            |||||||||||||||||| ||||||| || |||||||  || || |||||||||||||||
Sbjct: 3083 gcttggtgatactggtagtcaccttcatcatatgcctcgccctcttcagggccttcaggt 3024

                                                                
Query: 161  tctgngttg---ggttgtgcctgatantactcatgctcatgtctctttgagc 209
            |||| ||||   |||||   |||||| |||||||||||||||| ||||||||
Sbjct: 3023 tctgtgttgttaggttgcatctgatagtactcatgctcatgtcgctttgagc 2972
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>gb|DQ377062.1| Oryza sativa (japonica cultivar-group) U1 small nuclear
            ribonucleoprotein 70K mRNA, complete cds, alternatively
            spliced
          Length = 1815

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 96/112 (85%), Gaps = 3/112 (2%)
 Strand = Plus / Minus

                                                                        
Query: 101  gcttggtgatactggtagncaccttcctcgtatgcctnaccttcctcagggccttcaggt 160
            |||||||||||||||||| ||||||| || |||||||  || || |||||||||||||||
Sbjct: 1455 gcttggtgatactggtagtcaccttcatcatatgcctcgccctcttcagggccttcaggt 1396

                                                                
Query: 161  tctgngttg---ggttgtgcctgatantactcatgctcatgtctctttgagc 209
            |||| ||||   |||||   |||||| |||||||||||||||| ||||||||
Sbjct: 1395 tctgtgttgttaggttgcatctgatagtactcatgctcatgtcgctttgagc 1344
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>dbj|AK100686.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023113P16, full
            insert sequence
          Length = 3436

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 96/112 (85%), Gaps = 3/112 (2%)
 Strand = Plus / Minus

                                                                        
Query: 101  gcttggtgatactggtagncaccttcctcgtatgcctnaccttcctcagggccttcaggt 160
            |||||||||||||||||| ||||||| || |||||||  || || |||||||||||||||
Sbjct: 3094 gcttggtgatactggtagtcaccttcatcatatgcctcgccctcttcagggccttcaggt 3035

                                                                
Query: 161  tctgngttg---ggttgtgcctgatantactcatgctcatgtctctttgagc 209
            |||| ||||   |||||   |||||| |||||||||||||||| ||||||||
Sbjct: 3034 tctgtgttgttaggttgcatctgatagtactcatgctcatgtcgctttgagc 2983
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>dbj|AK059504.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-A09, full
            insert sequence
          Length = 1796

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 96/112 (85%), Gaps = 3/112 (2%)
 Strand = Plus / Minus

                                                                        
Query: 101  gcttggtgatactggtagncaccttcctcgtatgcctnaccttcctcagggccttcaggt 160
            |||||||||||||||||| ||||||| || |||||||  || || |||||||||||||||
Sbjct: 1454 gcttggtgatactggtagtcaccttcatcatatgcctcgccctcttcagggccttcaggt 1395

                                                                
Query: 161  tctgngttg---ggttgtgcctgatantactcatgctcatgtctctttgagc 209
            |||| ||||   |||||   |||||| |||||||||||||||| ||||||||
Sbjct: 1394 tctgtgttgttaggttgcatctgatagtactcatgctcatgtcgctttgagc 1343
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>dbj|AK121007.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023046L24, full
            insert sequence
          Length = 1798

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 95/112 (84%), Gaps = 3/112 (2%)
 Strand = Plus / Minus

                                                                        
Query: 101  gcttggtgatactggtagncaccttcctcgtatgcctnaccttcctcagggccttcaggt 160
            |||||||||||||||||| ||||| | || |||||||  || || |||||||||||||||
Sbjct: 1455 gcttggtgatactggtagtcacctccatcatatgcctcgccctcttcagggccttcaggt 1396

                                                                
Query: 161  tctgngttg---ggttgtgcctgatantactcatgctcatgtctctttgagc 209
            |||| ||||   |||||   |||||| |||||||||||||||| ||||||||
Sbjct: 1395 tctgtgttgttaggttgcatctgatagtactcatgctcatgtcgctttgagc 1344
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>gb|AY627768.1| Zea mays U1 snRNP mRNA, complete cds; alternatively spliced
          Length = 3299

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                                
Query: 105  ggtgatactggtagncaccttcctcgtatgcctnaccttcctcagggccttc 156
            |||||||||||||| | |||||||| ||||||| ||||||||||||||||||
Sbjct: 3148 ggtgatactggtagtcgccttcctcatatgcctcaccttcctcagggccttc 3097
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>gb|AY627767.1| Zea mays U1 snRNP mRNA, complete cds; alternatively spliced
          Length = 3463

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                                
Query: 105  ggtgatactggtagncaccttcctcgtatgcctnaccttcctcagggccttc 156
            |||||||||||||| | |||||||| ||||||| ||||||||||||||||||
Sbjct: 3312 ggtgatactggtagtcgccttcctcatatgcctcaccttcctcagggccttc 3261
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>gb|AY627766.1| Zea mays U1 snRNP mRNA, complete cds; alternatively spliced
          Length = 1647

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                                
Query: 105  ggtgatactggtagncaccttcctcgtatgcctnaccttcctcagggccttc 156
            |||||||||||||| | |||||||| ||||||| ||||||||||||||||||
Sbjct: 1496 ggtgatactggtagtcgccttcctcatatgcctcaccttcctcagggccttc 1445
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>gb|AY627765.1| Zea mays U1 snRNP gene, complete cds; alternatively spliced
          Length = 5550

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                                
Query: 105  ggtgatactggtagncaccttcctcgtatgcctnaccttcctcagggccttc 156
            |||||||||||||| | |||||||| ||||||| ||||||||||||||||||
Sbjct: 4751 ggtgatactggtagtcgccttcctcatatgcctcaccttcctcagggccttc 4700
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>gb|AY108570.1| Zea mays PCO063456 mRNA sequence
          Length = 1603

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                                
Query: 105  ggtgatactggtagncaccttcctcgtatgcctnaccttcctcagggccttc 156
            |||||||||||||| | |||||||| ||||||| ||||||||||||||||||
Sbjct: 1214 ggtgatactggtagtcgccttcctcatatgcctcaccttcctcagggccttc 1163
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>gb|AC146428.3| Pan troglodytes BAC clone RP43-22M18 from 7, complete sequence
          Length = 194995

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 340   attgtattcagcatccctatc 360
             |||||||||||||||||||||
Sbjct: 23819 attgtattcagcatccctatc 23839
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>gb|AC095039.3| Homo sapiens BAC clone RP11-12G8 from 7, complete sequence
          Length = 70416

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 340   attgtattcagcatccctatc 360
             |||||||||||||||||||||
Sbjct: 60774 attgtattcagcatccctatc 60754
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>emb|AL031589.10|HS11O7 Human DNA sequence from clone RP6-11O7 on chromosome 22q13.1-13.2,
             complete sequence
          Length = 115932

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 286   agagccataatgcttcccata 306
             |||||||||||||||||||||
Sbjct: 81761 agagccataatgcttcccata 81741
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>emb|CR627316.1| Homo sapiens genomic DNA; cDNA DKFZp686O11128 (from clone
            DKFZp686O11128)
          Length = 4350

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 286  agagccataatgcttcccata 306
            |||||||||||||||||||||
Sbjct: 2627 agagccataatgcttcccata 2607
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>ref|XM_482855.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1787

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 218 tcatggccatgcccatgccc 237
           ||||||||||||||||||||
Sbjct: 341 tcatggccatgcccatgccc 322
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>ref|XM_507589.1| PREDICTED Oryza sativa (japonica cultivar-group), P0104B02.41 mRNA
          Length = 1972

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 218 tcatggccatgcccatgccc 237
           ||||||||||||||||||||
Sbjct: 344 tcatggccatgcccatgccc 325
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>ref|XM_507265.2| PREDICTED Oryza sativa (japonica cultivar-group), P0104B02.41 mRNA
          Length = 2555

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 218 tcatggccatgcccatgccc 237
           ||||||||||||||||||||
Sbjct: 345 tcatggccatgcccatgccc 326
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>ref|XM_653456.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN0944.2), mRNA
          Length = 2229

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 26  tggcaagaagagaaaaaggg 45
           ||||||||||||||||||||
Sbjct: 141 tggcaagaagagaaaaaggg 160
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>gb|AC091458.5| Mus musculus chromosome 12, clone RP23-68M8, complete sequence
          Length = 289751

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 76   agcttcagtcttttgctcttctgc 99
            |||| |||||||||||||||||||
Sbjct: 5837 agctccagtcttttgctcttctgc 5860
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>emb|X14112.1|HE1CG Human herpesvirus 1 complete genome
          Length = 152261

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 209   ctttcagtttcatggccatg 228
             ||||||||||||||||||||
Sbjct: 69785 ctttcagtttcatggccatg 69804
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>gb|AC116596.3| Mus musculus BAC clone RP24-335P21 from chromosome 15, complete
             sequence
          Length = 165103

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 318   tcctgtcatgctttggctca 337
             ||||||||||||||||||||
Sbjct: 41674 tcctgtcatgctttggctca 41655
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>dbj|AB252867.1| Human herpesvirus 1 UL34 gene for virion protein, complete cds
          Length = 828

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 209 ctttcagtttcatggccatg 228
           ||||||||||||||||||||
Sbjct: 153 ctttcagtttcatggccatg 172
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>gb|BC112443.1| Bos taurus cDNA clone IMAGE:7987099, with apparent retained intron
          Length = 4259

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 25   ttggcaagaagagaaaaagg 44
            ||||||||||||||||||||
Sbjct: 1739 ttggcaagaagagaaaaagg 1720
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 218      tcatggccatgcccatgccc 237
                ||||||||||||||||||||
Sbjct: 22987384 tcatggccatgcccatgccc 22987403
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>gb|AC108938.3| Homo sapiens BAC clone RP11-701A10 from 2, complete sequence
          Length = 175222

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 266   ttgtgttgctcatgctggtt 285
             ||||||||||||||||||||
Sbjct: 71056 ttgtgttgctcatgctggtt 71075
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>gb|AE009499.1| Brucella melitensis 16M chromosome I, section 56 of 195 of the
            complete sequence
          Length = 10455

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 211  ttcagtttcatggccatgcc 230
            ||||||||||||||||||||
Sbjct: 3734 ttcagtttcatggccatgcc 3715
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>gb|AC155299.2| Mus musculus BAC clone RP24-229D17 from chromosome 15, complete
             sequence
          Length = 198559

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 318   tcctgtcatgctttggctca 337
             ||||||||||||||||||||
Sbjct: 13371 tcctgtcatgctttggctca 13390
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>gb|AC013271.4| Homo sapiens BAC clone RP11-385J6 from 2, complete sequence
          Length = 155702

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 266  ttgtgttgctcatgctggtt 285
            ||||||||||||||||||||
Sbjct: 9527 ttgtgttgctcatgctggtt 9546
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>gb|AC112229.4| Homo sapiens BAC clone RP13-1039J1 from 2, complete sequence
          Length = 154279

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 266   ttgtgttgctcatgctggtt 285
             ||||||||||||||||||||
Sbjct: 17560 ttgtgttgctcatgctggtt 17541
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>dbj|AP006461.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0104B02
          Length = 169588

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 218    tcatggccatgcccatgccc 237
              ||||||||||||||||||||
Sbjct: 161222 tcatggccatgcccatgccc 161241
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>dbj|AP004585.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0470B03
          Length = 163371

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 218   tcatggccatgcccatgccc 237
             ||||||||||||||||||||
Sbjct: 47112 tcatggccatgcccatgccc 47131
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>ref|XM_557151.1| Anopheles gambiae str. PEST ENSANGP00000028277 (ENSANGG00000010999),
            partial mRNA
          Length = 1614

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 80   tcagtcttttgctcttctgc 99
            ||||||||||||||||||||
Sbjct: 1565 tcagtcttttgctcttctgc 1546
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>ref|XM_316511.2| Anopheles gambiae str. PEST ENSANGP00000013488 (ENSANGG00000010999),
            partial mRNA
          Length = 2526

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 80   tcagtcttttgctcttctgc 99
            ||||||||||||||||||||
Sbjct: 2219 tcagtcttttgctcttctgc 2200
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>dbj|AK105607.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-B01, full
           insert sequence
          Length = 1786

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 218 tcatggccatgcccatgccc 237
           ||||||||||||||||||||
Sbjct: 341 tcatggccatgcccatgccc 322
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>dbj|AK102279.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033089E10, full
           insert sequence
          Length = 1972

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 218 tcatggccatgcccatgccc 237
           ||||||||||||||||||||
Sbjct: 344 tcatggccatgcccatgccc 325
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>dbj|AK070501.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054A11, full
           insert sequence
          Length = 2555

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 218 tcatggccatgcccatgccc 237
           ||||||||||||||||||||
Sbjct: 345 tcatggccatgcccatgccc 326
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>emb|BX908754.8| Zebrafish DNA sequence from clone DKEY-196D8 in linkage group 18,
             complete sequence
          Length = 94961

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 266   ttgtgttgctcatgctggtt 285
             ||||||||||||||||||||
Sbjct: 14634 ttgtgttgctcatgctggtt 14615
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>gb|U71217.1|HSU71217 Human clone c15H12, 24Kb distal CMT1A-REP sequence
          Length = 39906

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    tggcaagaagagaaaaaggg 45
             ||||||||||||||||||||
Sbjct: 35295 tggcaagaagagaaaaaggg 35314
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>gb|AC005224.1|AC005224 Homo sapiens chromosome 17, clone hRPK.214_O_1, complete sequence
          Length = 166687

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 26     tggcaagaagagaaaaaggg 45
              ||||||||||||||||||||
Sbjct: 148895 tggcaagaagagaaaaaggg 148876
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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 11      tattatcatctccgttggcaagaa 34
               ||||||||||||||| ||||||||
Sbjct: 5402720 tattatcatctccgtcggcaagaa 5402743
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>emb|AL591207.15| Mouse DNA sequence from clone RP23-392O3 on chromosome 12, complete
              sequence
          Length = 211056

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 76     agcttcagtcttttgctcttctgc 99
              |||| |||||||||||||||||||
Sbjct: 101564 agctccagtcttttgctcttctgc 101541


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,203,680
Number of Sequences: 3902068
Number of extensions: 3203680
Number of successful extensions: 86637
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86476
Number of HSP's gapped (non-prelim): 146
length of query: 373
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 351
effective length of database: 17,147,199,772
effective search space: 6018667119972
effective search space used: 6018667119972
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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