No.
Definition
Score (bits)
E Value
1 ref|NM_194601.1| Oryza sativa (japonica cultivar-group) putative...
139
1e-29
2 gb|AC078891.2| Oryza sativa (japonica cultivar-group) chromosome...
139
1e-29
3 gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome...
139
1e-29
4 gb|DQ377064.1| Oryza sativa (japonica cultivar-group) U1 small n...
139
1e-29
5 gb|DQ377063.1| Oryza sativa (japonica cultivar-group) U1 small n...
139
1e-29
6 gb|DQ377062.1| Oryza sativa (japonica cultivar-group) U1 small n...
139
1e-29
7 dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D...
139
1e-29
8 dbj|AK121007.1| Oryza sativa (japonica cultivar-group) cDNA clon...
139
1e-29
9 dbj|AK100686.1| Oryza sativa (japonica cultivar-group) cDNA clon...
139
1e-29
10 dbj|AK059504.1| Oryza sativa (japonica cultivar-group) cDNA clon...
139
1e-29
11 gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome...
139
1e-29
12 gb|AY627768.1| Zea mays U1 snRNP mRNA, complete cds; alternative...
98
5e-17
13 gb|AY627767.1| Zea mays U1 snRNP mRNA, complete cds; alternative...
98
5e-17
14 gb|AY627766.1| Zea mays U1 snRNP mRNA, complete cds; alternative...
98
5e-17
15 gb|AY627765.1| Zea mays U1 snRNP gene, complete cds; alternative...
98
5e-17
16 gb|AY108570.1| Zea mays PCO063456 mRNA sequence
98
5e-17
17 gb|DQ019633.1| Triticum aestivum U1 snRNP-interacting 70 kDa pro...
82
3e-12
18 gb|AC182706.2| Populus trichocarpa clone Pop1-79P19, complete se...
46
0.15
19 gb|AC159716.6| Mus musculus 6 BAC RP23-80P15 (Roswell Park Cance...
46
0.15
20 dbj|AP009046.1| Hyphantria cunea nucleopolyhedrovirus genomic DN...
46
0.15
21 gb|AC154859.2| Mus musculus BAC clone RP23-14B14 from chromosome...
46
0.15
22 ref|XM_632633.1| Dictyostelium discoideum hypothetical protein (...
42
2.4
23 ref|XM_322654.1| Neurospora crassa OR74A hypothetical protein (N...
42
2.4
24 ref|XM_951751.1| Neurospora crassa OR74A hypothetical protein (N...
42
2.4
25 gb|AC146428.3| Pan troglodytes BAC clone RP43-22M18 from 7, comp...
42
2.4
26 ref|XM_385689.1| Gibberella zeae PH-1 chromosome 3 hypothetical ...
42
2.4
27 ref|XM_382910.1| Gibberella zeae PH-1 chromosome 1 hypothetical ...
42
2.4
28 gb|AC095039.3| Homo sapiens BAC clone RP11-12G8 from 7, complete...
42
2.4
29 gb|AF038619.2| Caenorhabditis elegans cosmid F56A11, complete se...
42
2.4
30 gb|AF067607.3| Caenorhabditis elegans cosmid C18H7, complete seq...
42
2.4
31 gb|AC147964.10| Medicago truncatula clone mth2-5i18, complete se...
42
2.4
32 emb|AL031589.10|HS11O7 Human DNA sequence from clone RP6-11O7 on...
42
2.4
33 emb|BX034813.1|CNS08Z0X Single read from an extremity of a full-...
42
2.4
34 emb|BX027358.1|CNS08T9U Single read from an extremity of a full-...
42
2.4
35 gb|AY282786.1| Desulfovibrio gigas ech operon, complete sequence
42
2.4
36 emb|BX009328.1|CNS08FD0 Single read from an extremity of a full-...
42
2.4
37 emb|BX009327.1|CNS08FCZ Single read from an extremity of a full-...
42
2.4
38 emb|AL669992.1|NCB19C19 Neurospora crassa DNA linkage group II B...
42
2.4
39 emb|CR627316.1| Homo sapiens genomic DNA; cDNA DKFZp686O11128 (f...
42
2.4
40 gb|AC148484.17| Medicago truncatula clone mth2-46g10, complete s...
42
2.4
41 ref|NM_067549.2| Caenorhabditis elegans F56A11.6 (F56A11.6) mRNA...
42
2.4
42 ref|NM_125120.2| Arabidopsis thaliana unknown protein AT5G57370 ...
40
9.4
43 ref|XM_631879.1| Dictyostelium discoideum hypothetical protein (...
40
9.4
44 ref|XM_482855.1| Oryza sativa (japonica cultivar-group), mRNA
40
9.4
45 ref|XM_507589.1| PREDICTED Oryza sativa (japonica cultivar-group...
40
9.4
46 ref|XM_507265.2| PREDICTED Oryza sativa (japonica cultivar-group...
40
9.4
47 gb|AC091458.5| Mus musculus chromosome 12, clone RP23-68M8, comp...
40
9.4
48 ref|XM_841434.1| Trypanosoma brucei TREU927 hypothetical protein...
40
9.4
49 emb|X14112.1|HE1CG Human herpesvirus 1 complete genome
40
9.4
50 gb|AC116596.3| Mus musculus BAC clone RP24-335P21 from chromosom...
40
9.4
51 emb|CR698862.2|CNS0G26Y Tetraodon nigroviridis full-length cDNA
40
9.4
52 ref|XM_660953.1| Cryptosporidium hominis TU502 hypothetical prot...
40
9.4
53 ref|XM_503754.1| Yarrowia lipolytica CLIB122, YALI0E09889g predi...
40
9.4
54 gb|AY113928.1| Arabidopsis thaliana unknown protein (At5g57370) ...
40
9.4
55 gb|AF370233.1| Arabidopsis thaliana unknown protein (At5g57370) ...
40
9.4
56 gb|AF486184.1| Bovine papillomavirus type 3, complete genome
40
9.4
57 emb|AJ620207.1| Bovine papillomavirus type 3 complete genome
40
9.4
58 dbj|AB252867.1| Human herpesvirus 1 UL34 gene for virion protein...
40
9.4
59 gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
40
9.4
60 gb|CP000138.1| Rhizobium etli CFN 42 plasmid p42f, complete sequ...
40
9.4
61 ref|NM_057497.3| Drosophila melanogaster grainy head CG5058-RD, ...
40
9.4
62 ref|NM_057496.3| Drosophila melanogaster grainy head CG5058-RC, ...
40
9.4
63 ref|NM_057495.3| Drosophila melanogaster grainy head CG5058-RB, ...
40
9.4
64 ref|NM_057494.3| Drosophila melanogaster grainy head CG5058-RA, ...
40
9.4
65 gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
40
9.4
66 gb|AC018843.4|AC018843 Homo sapiens chromosome 3 clone RP11-900O...
40
9.4
67 gb|AC091500.1|AC091500 Drosophila melanogaster, chromosome 2R, r...
40
9.4
68 ref|XM_624370.1| PREDICTED: Apis mellifera similar to ENSANGP000...
40
9.4
69 dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D...
40
9.4
70 emb|BX833689.1|CNS0A0AO Arabidopsis thaliana Full-length cDNA Co...
40
9.4
71 gb|AC108938.3| Homo sapiens BAC clone RP11-701A10 from 2, comple...
40
9.4
72 gb|AE009499.1| Brucella melitensis 16M chromosome I, section 56 ...
40
9.4
73 gb|AC155299.2| Mus musculus BAC clone RP24-229D17 from chromosom...
40
9.4
74 gb|AC013271.4| Homo sapiens BAC clone RP11-385J6 from 2, complet...
40
9.4
75 gb|AY087116.1| Arabidopsis thaliana clone 31894 mRNA, complete s...
40
9.4
76 gb|AC112229.4| Homo sapiens BAC clone RP13-1039J1 from 2, comple...
40
9.4
77 dbj|AP006461.3| Oryza sativa (japonica cultivar-group) genomic D...
40
9.4
78 dbj|AB016891.1| Arabidopsis thaliana genomic DNA, chromosome 5, ...
40
9.4
79 dbj|AP004585.2| Oryza sativa (japonica cultivar-group) genomic D...
40
9.4
80 ref|XM_557151.1| Anopheles gambiae str. PEST ENSANGP00000028277 ...
40
9.4
81 ref|XM_316511.2| Anopheles gambiae str. PEST ENSANGP00000013488 ...
40
9.4
82 dbj|AK105607.1| Oryza sativa (japonica cultivar-group) cDNA clon...
40
9.4
83 dbj|AK102279.1| Oryza sativa (japonica cultivar-group) cDNA clon...
40
9.4
84 dbj|AK070501.1| Oryza sativa (japonica cultivar-group) cDNA clon...
40
9.4
85 emb|BX908754.8| Zebrafish DNA sequence from clone DKEY-196D8 in ...
40
9.4
86 gb|AE003801.4| Drosophila melanogaster chromosome 2R, section 49...
40
9.4
87 gb|AC004328.1|AC004328 Drosophila melanogaster, chromosome 2R, r...
40
9.4
88 emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB ...
40
9.4
89 emb|AL591207.15| Mouse DNA sequence from clone RP23-392O3 on chr...
40
9.4
90 emb|X15657.1|DMELF1 Drosophila mRNA for DNA-binding protein Elf1...
40
9.4
91 emb|AL035312.1|DMC191D12 Drosophila melanogaster cosmid clone 19...
40
9.4
92 gb|AC034198.7| Homo sapiens chromosome 3 clone RP11-767C1 map 3p...
40
9.4
93 gb|AC018836.5| Homo sapiens chromosome 3 clone RP11-588P9 map 3p...
40
9.4
>ref|NM_194601.1 | Oryza sativa (japonica cultivar-group) putative U1 small nuclear
ribonucleoprotein (OSJNBa0092N12.2), mRNA
Length = 1476
Score = 139 bits (70), Expect = 1e-29
Identities = 134/156 (85%), Gaps = 6/156 (3%)
Strand = Plus / Minus
Query: 532 atccctaccacggtccctatccctatctctgtcccgacgatcacg------gtcacggtc 585
||||| |||||| ||||| ||||||||||| || ||||||||||| |||||||||
Sbjct: 1134 atcccgaccacgatccctgtccctatctctatcacgacgatcacgctcacggtcacggtc 1075
Query: 586 acgcccatggtctttttcccggtcccttcctcggtccctgtcccgagtcctgtcccgatc 645
||| ||||| ||| | ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1074 acgaccatgatctctctcccggtcccttcctcgttccctgtcccgagtcctgtcccgatc 1015
Query: 646 tctatggtggtgcctctcttnccttgaatcacgctc 681
||||||||||| || |||| |||||||||||||
Sbjct: 1014 cctatggtggtgtctatcttcttttgaatcacgctc 979
Score = 123 bits (62), Expect = 8e-25
Identities = 100/112 (89%), Gaps = 3/112 (2%)
Strand = Plus / Minus
Query: 158 gcttggtgatactggtagtcaccttcctcgtatgcctcaccttcctcagggccttcaggt 217
|||||||||||||||||||||||||| || |||||||| || || |||||||||||||||
Sbjct: 1454 gcttggtgatactggtagtcaccttcatcatatgcctcgccctcttcagggccttcaggt 1395
Query: 218 tctgtgttg---ggttgtgcctgatagtactcatgctcatgtctctttgagc 266
||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct: 1394 tctgtgttgttaggttgcatctgatagtactcatgctcatgtcgctttgagc 1343
Score = 75.8 bits (38), Expect = 2e-10
Identities = 68/78 (87%)
Strand = Plus / Minus
Query: 425 tgaccgcggtcacgttcgtaacttgcacgcccatcatctctctcacgatccctgcctctc 484
||||| ||||| ||||| | |||||||||| | | |||||||||||| ||||||||||||
Sbjct: 1235 tgaccacggtcccgttcatgacttgcacgctcgtaatctctctcacggtccctgcctctc 1176
Query: 485 tcacggtgacgatcatga 502
||||| || |||||||||
Sbjct: 1175 tcacgatggcgatcatga 1158
>gb|AC078891.2 | Oryza sativa (japonica cultivar-group) chromosome 10 clone
OSJNBa0092N12, complete sequence
Length = 109198
Score = 139 bits (70), Expect = 1e-29
Identities = 134/156 (85%), Gaps = 6/156 (3%)
Strand = Plus / Minus
Query: 532 atccctaccacggtccctatccctatctctgtcccgacgatcacg------gtcacggtc 585
||||| |||||| ||||| ||||||||||| || ||||||||||| |||||||||
Sbjct: 15120 atcccgaccacgatccctgtccctatctctatcacgacgatcacgctcacggtcacggtc 15061
Query: 586 acgcccatggtctttttcccggtcccttcctcggtccctgtcccgagtcctgtcccgatc 645
||| ||||| ||| | ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 15060 acgaccatgatctctctcccggtcccttcctcgttccctgtcccgagtcctgtcccgatc 15001
Query: 646 tctatggtggtgcctctcttnccttgaatcacgctc 681
||||||||||| || |||| |||||||||||||
Sbjct: 15000 cctatggtggtgtctatcttcttttgaatcacgctc 14965
Score = 135 bits (68), Expect = 2e-28
Identities = 137/158 (86%), Gaps = 4/158 (2%)
Strand = Plus / Minus
Query: 113 aaaacttactgcagtaatcaagcttcagtcttt-tgctcttctgctgcttggtgatactg 171
|||||||||||||| |||||| |||||| || ||||| || || ||||||||||||||
Sbjct: 15486 aaaacttactgcagcaatcaaatttcagttattgtgctcatcagcagcttggtgatactg 15427
Query: 172 gtagtcaccttcctcgtatgcctcaccttcctcagggccttcaggttctgtgttg---gg 228
|||||||||||| || |||||||| || || |||||||||||||||||||||||| ||
Sbjct: 15426 gtagtcaccttcatcatatgcctcgccctcttcagggccttcaggttctgtgttgttagg 15367
Query: 229 ttgtgcctgatagtactcatgctcatgtctctttgagc 266
||| ||||||||||||||||||||||| ||||||||
Sbjct: 15366 ttgcatctgatagtactcatgctcatgtcgctttgagc 15329
Score = 75.8 bits (38), Expect = 2e-10
Identities = 68/78 (87%)
Strand = Plus / Minus
Query: 425 tgaccgcggtcacgttcgtaacttgcacgcccatcatctctctcacgatccctgcctctc 484
||||| ||||| ||||| | |||||||||| | | |||||||||||| ||||||||||||
Sbjct: 15221 tgaccacggtcccgttcatgacttgcacgctcgtaatctctctcacggtccctgcctctc 15162
Query: 485 tcacggtgacgatcatga 502
||||| || |||||||||
Sbjct: 15161 tcacgatggcgatcatga 15144
>gb|AC145127.1 | Oryza sativa (japonica cultivar-group) chromosome 10 clone
Pseudo10p0.0-10p4.4, complete sequence
Length = 2331000
Score = 139 bits (70), Expect = 1e-29
Identities = 134/156 (85%), Gaps = 6/156 (3%)
Strand = Plus / Plus
Query: 532 atccctaccacggtccctatccctatctctgtcccgacgatcacg------gtcacggtc 585
||||| |||||| ||||| ||||||||||| || ||||||||||| |||||||||
Sbjct: 987434 atcccgaccacgatccctgtccctatctctatcacgacgatcacgctcacggtcacggtc 987493
Query: 586 acgcccatggtctttttcccggtcccttcctcggtccctgtcccgagtcctgtcccgatc 645
||| ||||| ||| | ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 987494 acgaccatgatctctctcccggtcccttcctcgttccctgtcccgagtcctgtcccgatc 987553
Query: 646 tctatggtggtgcctctcttnccttgaatcacgctc 681
||||||||||| || |||| |||||||||||||
Sbjct: 987554 cctatggtggtgtctatcttcttttgaatcacgctc 987589
Score = 135 bits (68), Expect = 2e-28
Identities = 137/158 (86%), Gaps = 4/158 (2%)
Strand = Plus / Plus
Query: 113 aaaacttactgcagtaatcaagcttcagtcttt-tgctcttctgctgcttggtgatactg 171
|||||||||||||| |||||| |||||| || ||||| || || ||||||||||||||
Sbjct: 987068 aaaacttactgcagcaatcaaatttcagttattgtgctcatcagcagcttggtgatactg 987127
Query: 172 gtagtcaccttcctcgtatgcctcaccttcctcagggccttcaggttctgtgttg---gg 228
|||||||||||| || |||||||| || || |||||||||||||||||||||||| ||
Sbjct: 987128 gtagtcaccttcatcatatgcctcgccctcttcagggccttcaggttctgtgttgttagg 987187
Query: 229 ttgtgcctgatagtactcatgctcatgtctctttgagc 266
||| ||||||||||||||||||||||| ||||||||
Sbjct: 987188 ttgcatctgatagtactcatgctcatgtcgctttgagc 987225
Score = 75.8 bits (38), Expect = 2e-10
Identities = 68/78 (87%)
Strand = Plus / Plus
Query: 425 tgaccgcggtcacgttcgtaacttgcacgcccatcatctctctcacgatccctgcctctc 484
||||| ||||| ||||| | |||||||||| | | |||||||||||| ||||||||||||
Sbjct: 987333 tgaccacggtcccgttcatgacttgcacgctcgtaatctctctcacggtccctgcctctc 987392
Query: 485 tcacggtgacgatcatga 502
||||| || |||||||||
Sbjct: 987393 tcacgatggcgatcatga 987410
>gb|DQ377064.1 | Oryza sativa (japonica cultivar-group) U1 small nuclear
ribonucleoprotein 70K splice variant 2 mRNA, complete
cds, alternatively spliced
Length = 3284
Score = 139 bits (70), Expect = 1e-29
Identities = 134/156 (85%), Gaps = 6/156 (3%)
Strand = Plus / Minus
Query: 532 atccctaccacggtccctatccctatctctgtcccgacgatcacg------gtcacggtc 585
||||| |||||| ||||| ||||||||||| || ||||||||||| |||||||||
Sbjct: 2604 atcccgaccacgatccctgtccctatctctatcacgacgatcacgctcacggtcacggtc 2545
Query: 586 acgcccatggtctttttcccggtcccttcctcggtccctgtcccgagtcctgtcccgatc 645
||| ||||| ||| | ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 2544 acgaccatgatctctctcccggtcccttcctcgttccctgtcccgagtcctgtcccgatc 2485
Query: 646 tctatggtggtgcctctcttnccttgaatcacgctc 681
||||||||||| || |||| |||||||||||||
Sbjct: 2484 cctatggtggtgtctatcttcttttgaatcacgctc 2449
Score = 123 bits (62), Expect = 8e-25
Identities = 100/112 (89%), Gaps = 3/112 (2%)
Strand = Plus / Minus
Query: 158 gcttggtgatactggtagtcaccttcctcgtatgcctcaccttcctcagggccttcaggt 217
|||||||||||||||||||||||||| || |||||||| || || |||||||||||||||
Sbjct: 2924 gcttggtgatactggtagtcaccttcatcatatgcctcgccctcttcagggccttcaggt 2865
Query: 218 tctgtgttg---ggttgtgcctgatagtactcatgctcatgtctctttgagc 266
||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct: 2864 tctgtgttgttaggttgcatctgatagtactcatgctcatgtcgctttgagc 2813
Score = 75.8 bits (38), Expect = 2e-10
Identities = 68/78 (87%)
Strand = Plus / Minus
Query: 425 tgaccgcggtcacgttcgtaacttgcacgcccatcatctctctcacgatccctgcctctc 484
||||| ||||| ||||| | |||||||||| | | |||||||||||| ||||||||||||
Sbjct: 2705 tgaccacggtcccgttcatgacttgcacgctcgtaatctctctcacggtccctgcctctc 2646
Query: 485 tcacggtgacgatcatga 502
||||| || |||||||||
Sbjct: 2645 tcacgatggcgatcatga 2628
>gb|DQ377063.1 | Oryza sativa (japonica cultivar-group) U1 small nuclear
ribonucleoprotein 70K splice variant 1 mRNA, complete
cds, alternatively spliced
Length = 3443
Score = 139 bits (70), Expect = 1e-29
Identities = 134/156 (85%), Gaps = 6/156 (3%)
Strand = Plus / Minus
Query: 532 atccctaccacggtccctatccctatctctgtcccgacgatcacg------gtcacggtc 585
||||| |||||| ||||| ||||||||||| || ||||||||||| |||||||||
Sbjct: 2763 atcccgaccacgatccctgtccctatctctatcacgacgatcacgctcacggtcacggtc 2704
Query: 586 acgcccatggtctttttcccggtcccttcctcggtccctgtcccgagtcctgtcccgatc 645
||| ||||| ||| | ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 2703 acgaccatgatctctctcccggtcccttcctcgttccctgtcccgagtcctgtcccgatc 2644
Query: 646 tctatggtggtgcctctcttnccttgaatcacgctc 681
||||||||||| || |||| |||||||||||||
Sbjct: 2643 cctatggtggtgtctatcttcttttgaatcacgctc 2608
Score = 123 bits (62), Expect = 8e-25
Identities = 100/112 (89%), Gaps = 3/112 (2%)
Strand = Plus / Minus
Query: 158 gcttggtgatactggtagtcaccttcctcgtatgcctcaccttcctcagggccttcaggt 217
|||||||||||||||||||||||||| || |||||||| || || |||||||||||||||
Sbjct: 3083 gcttggtgatactggtagtcaccttcatcatatgcctcgccctcttcagggccttcaggt 3024
Query: 218 tctgtgttg---ggttgtgcctgatagtactcatgctcatgtctctttgagc 266
||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct: 3023 tctgtgttgttaggttgcatctgatagtactcatgctcatgtcgctttgagc 2972
Score = 75.8 bits (38), Expect = 2e-10
Identities = 68/78 (87%)
Strand = Plus / Minus
Query: 425 tgaccgcggtcacgttcgtaacttgcacgcccatcatctctctcacgatccctgcctctc 484
||||| ||||| ||||| | |||||||||| | | |||||||||||| ||||||||||||
Sbjct: 2864 tgaccacggtcccgttcatgacttgcacgctcgtaatctctctcacggtccctgcctctc 2805
Query: 485 tcacggtgacgatcatga 502
||||| || |||||||||
Sbjct: 2804 tcacgatggcgatcatga 2787
>gb|DQ377062.1 | Oryza sativa (japonica cultivar-group) U1 small nuclear
ribonucleoprotein 70K mRNA, complete cds, alternatively
spliced
Length = 1815
Score = 139 bits (70), Expect = 1e-29
Identities = 134/156 (85%), Gaps = 6/156 (3%)
Strand = Plus / Minus
Query: 532 atccctaccacggtccctatccctatctctgtcccgacgatcacg------gtcacggtc 585
||||| |||||| ||||| ||||||||||| || ||||||||||| |||||||||
Sbjct: 1135 atcccgaccacgatccctgtccctatctctatcacgacgatcacgctcacggtcacggtc 1076
Query: 586 acgcccatggtctttttcccggtcccttcctcggtccctgtcccgagtcctgtcccgatc 645
||| ||||| ||| | ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1075 acgaccatgatctctctcccggtcccttcctcgttccctgtcccgagtcctgtcccgatc 1016
Query: 646 tctatggtggtgcctctcttnccttgaatcacgctc 681
||||||||||| || |||| |||||||||||||
Sbjct: 1015 cctatggtggtgtctatcttcttttgaatcacgctc 980
Score = 123 bits (62), Expect = 8e-25
Identities = 100/112 (89%), Gaps = 3/112 (2%)
Strand = Plus / Minus
Query: 158 gcttggtgatactggtagtcaccttcctcgtatgcctcaccttcctcagggccttcaggt 217
|||||||||||||||||||||||||| || |||||||| || || |||||||||||||||
Sbjct: 1455 gcttggtgatactggtagtcaccttcatcatatgcctcgccctcttcagggccttcaggt 1396
Query: 218 tctgtgttg---ggttgtgcctgatagtactcatgctcatgtctctttgagc 266
||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct: 1395 tctgtgttgttaggttgcatctgatagtactcatgctcatgtcgctttgagc 1344
Score = 75.8 bits (38), Expect = 2e-10
Identities = 68/78 (87%)
Strand = Plus / Minus
Query: 425 tgaccgcggtcacgttcgtaacttgcacgcccatcatctctctcacgatccctgcctctc 484
||||| ||||| ||||| | |||||||||| | | |||||||||||| ||||||||||||
Sbjct: 1236 tgaccacggtcccgttcatgacttgcacgctcgtaatctctctcacggtccctgcctctc 1177
Query: 485 tcacggtgacgatcatga 502
||||| || |||||||||
Sbjct: 1176 tcacgatggcgatcatga 1159
>dbj|AP008216.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10,
complete sequence
Length = 22685906
Score = 139 bits (70), Expect = 1e-29
Identities = 134/156 (85%), Gaps = 6/156 (3%)
Strand = Plus / Plus
Query: 532 atccctaccacggtccctatccctatctctgtcccgacgatcacg------gtcacggtc 585
||||| |||||| ||||| ||||||||||| || ||||||||||| |||||||||
Sbjct: 987434 atcccgaccacgatccctgtccctatctctatcacgacgatcacgctcacggtcacggtc 987493
Query: 586 acgcccatggtctttttcccggtcccttcctcggtccctgtcccgagtcctgtcccgatc 645
||| ||||| ||| | ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 987494 acgaccatgatctctctcccggtcccttcctcgttccctgtcccgagtcctgtcccgatc 987553
Query: 646 tctatggtggtgcctctcttnccttgaatcacgctc 681
||||||||||| || |||| |||||||||||||
Sbjct: 987554 cctatggtggtgtctatcttcttttgaatcacgctc 987589
Score = 135 bits (68), Expect = 2e-28
Identities = 137/158 (86%), Gaps = 4/158 (2%)
Strand = Plus / Plus
Query: 113 aaaacttactgcagtaatcaagcttcagtcttt-tgctcttctgctgcttggtgatactg 171
|||||||||||||| |||||| |||||| || ||||| || || ||||||||||||||
Sbjct: 987068 aaaacttactgcagcaatcaaatttcagttattgtgctcatcagcagcttggtgatactg 987127
Query: 172 gtagtcaccttcctcgtatgcctcaccttcctcagggccttcaggttctgtgttg---gg 228
|||||||||||| || |||||||| || || |||||||||||||||||||||||| ||
Sbjct: 987128 gtagtcaccttcatcatatgcctcgccctcttcagggccttcaggttctgtgttgttagg 987187
Query: 229 ttgtgcctgatagtactcatgctcatgtctctttgagc 266
||| ||||||||||||||||||||||| ||||||||
Sbjct: 987188 ttgcatctgatagtactcatgctcatgtcgctttgagc 987225
Score = 75.8 bits (38), Expect = 2e-10
Identities = 68/78 (87%)
Strand = Plus / Plus
Query: 425 tgaccgcggtcacgttcgtaacttgcacgcccatcatctctctcacgatccctgcctctc 484
||||| ||||| ||||| | |||||||||| | | |||||||||||| ||||||||||||
Sbjct: 987333 tgaccacggtcccgttcatgacttgcacgctcgtaatctctctcacggtccctgcctctc 987392
Query: 485 tcacggtgacgatcatga 502
||||| || |||||||||
Sbjct: 987393 tcacgatggcgatcatga 987410
>dbj|AK121007.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J023046L24, full
insert sequence
Length = 1798
Score = 139 bits (70), Expect = 1e-29
Identities = 134/156 (85%), Gaps = 6/156 (3%)
Strand = Plus / Minus
Query: 532 atccctaccacggtccctatccctatctctgtcccgacgatcacg------gtcacggtc 585
||||| |||||| ||||| ||||||||||| || ||||||||||| |||||||||
Sbjct: 1135 atcccgaccacgatccctgtccctatctctatcacgacgatcacgctcacggtcacggtc 1076
Query: 586 acgcccatggtctttttcccggtcccttcctcggtccctgtcccgagtcctgtcccgatc 645
||| ||||| ||| | ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1075 acgaccatgatctctctcccggtcccttcctcgttccctgtcccgagtcctgtcccgatc 1016
Query: 646 tctatggtggtgcctctcttnccttgaatcacgctc 681
||||||||||| || |||| |||||||||||||
Sbjct: 1015 cctatggtggtgtctatcttcttttgaatcacgctc 980
Score = 115 bits (58), Expect = 2e-22
Identities = 99/112 (88%), Gaps = 3/112 (2%)
Strand = Plus / Minus
Query: 158 gcttggtgatactggtagtcaccttcctcgtatgcctcaccttcctcagggccttcaggt 217
|||||||||||||||||||||||| | || |||||||| || || |||||||||||||||
Sbjct: 1455 gcttggtgatactggtagtcacctccatcatatgcctcgccctcttcagggccttcaggt 1396
Query: 218 tctgtgttg---ggttgtgcctgatagtactcatgctcatgtctctttgagc 266
||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct: 1395 tctgtgttgttaggttgcatctgatagtactcatgctcatgtcgctttgagc 1344
Score = 75.8 bits (38), Expect = 2e-10
Identities = 68/78 (87%)
Strand = Plus / Minus
Query: 425 tgaccgcggtcacgttcgtaacttgcacgcccatcatctctctcacgatccctgcctctc 484
||||| ||||| ||||| | |||||||||| | | |||||||||||| ||||||||||||
Sbjct: 1236 tgaccacggtcccgttcatgacttgcacgctcgtaatctctctcacggtccctgcctctc 1177
Query: 485 tcacggtgacgatcatga 502
||||| || |||||||||
Sbjct: 1176 tcacgatggcgatcatga 1159
>dbj|AK100686.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J023113P16, full
insert sequence
Length = 3436
Score = 139 bits (70), Expect = 1e-29
Identities = 134/156 (85%), Gaps = 6/156 (3%)
Strand = Plus / Minus
Query: 532 atccctaccacggtccctatccctatctctgtcccgacgatcacg------gtcacggtc 585
||||| |||||| ||||| ||||||||||| || ||||||||||| |||||||||
Sbjct: 2774 atcccgaccacgatccctgtccctatctctatcacgacgatcacgctcacggtcacggtc 2715
Query: 586 acgcccatggtctttttcccggtcccttcctcggtccctgtcccgagtcctgtcccgatc 645
||| ||||| ||| | ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 2714 acgaccatgatctctctcccggtcccttcctcgttccctgtcccgagtcctgtcccgatc 2655
Query: 646 tctatggtggtgcctctcttnccttgaatcacgctc 681
||||||||||| || |||| |||||||||||||
Sbjct: 2654 cctatggtggtgtctatcttcttttgaatcacgctc 2619
Score = 123 bits (62), Expect = 8e-25
Identities = 100/112 (89%), Gaps = 3/112 (2%)
Strand = Plus / Minus
Query: 158 gcttggtgatactggtagtcaccttcctcgtatgcctcaccttcctcagggccttcaggt 217
|||||||||||||||||||||||||| || |||||||| || || |||||||||||||||
Sbjct: 3094 gcttggtgatactggtagtcaccttcatcatatgcctcgccctcttcagggccttcaggt 3035
Query: 218 tctgtgttg---ggttgtgcctgatagtactcatgctcatgtctctttgagc 266
||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct: 3034 tctgtgttgttaggttgcatctgatagtactcatgctcatgtcgctttgagc 2983
Score = 75.8 bits (38), Expect = 2e-10
Identities = 68/78 (87%)
Strand = Plus / Minus
Query: 425 tgaccgcggtcacgttcgtaacttgcacgcccatcatctctctcacgatccctgcctctc 484
||||| ||||| ||||| | |||||||||| | | |||||||||||| ||||||||||||
Sbjct: 2875 tgaccacggtcccgttcatgacttgcacgctcgtaatctctctcacggtccctgcctctc 2816
Query: 485 tcacggtgacgatcatga 502
||||| || |||||||||
Sbjct: 2815 tcacgatggcgatcatga 2798
>dbj|AK059504.1 | Oryza sativa (japonica cultivar-group) cDNA clone:001-029-A09, full
insert sequence
Length = 1796
Score = 139 bits (70), Expect = 1e-29
Identities = 134/156 (85%), Gaps = 6/156 (3%)
Strand = Plus / Minus
Query: 532 atccctaccacggtccctatccctatctctgtcccgacgatcacg------gtcacggtc 585
||||| |||||| ||||| ||||||||||| || ||||||||||| |||||||||
Sbjct: 1134 atcccgaccacgatccctgtccctatctctatcacgacgatcacgctcacggtcacggtc 1075
Query: 586 acgcccatggtctttttcccggtcccttcctcggtccctgtcccgagtcctgtcccgatc 645
||| ||||| ||| | ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1074 acgaccatgatctctctcccggtcccttcctcgttccctgtcccgagtcctgtcccgatc 1015
Query: 646 tctatggtggtgcctctcttnccttgaatcacgctc 681
||||||||||| || |||| |||||||||||||
Sbjct: 1014 cctatggtggtgtctatcttcttttgaatcacgctc 979
Score = 123 bits (62), Expect = 8e-25
Identities = 100/112 (89%), Gaps = 3/112 (2%)
Strand = Plus / Minus
Query: 158 gcttggtgatactggtagtcaccttcctcgtatgcctcaccttcctcagggccttcaggt 217
|||||||||||||||||||||||||| || |||||||| || || |||||||||||||||
Sbjct: 1454 gcttggtgatactggtagtcaccttcatcatatgcctcgccctcttcagggccttcaggt 1395
Query: 218 tctgtgttg---ggttgtgcctgatagtactcatgctcatgtctctttgagc 266
||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct: 1394 tctgtgttgttaggttgcatctgatagtactcatgctcatgtcgctttgagc 1343
Score = 75.8 bits (38), Expect = 2e-10
Identities = 68/78 (87%)
Strand = Plus / Minus
Query: 425 tgaccgcggtcacgttcgtaacttgcacgcccatcatctctctcacgatccctgcctctc 484
||||| ||||| ||||| | |||||||||| | | |||||||||||| ||||||||||||
Sbjct: 1235 tgaccacggtcccgttcatgacttgcacgctcgtaatctctctcacggtccctgcctctc 1176
Query: 485 tcacggtgacgatcatga 502
||||| || |||||||||
Sbjct: 1175 tcacgatggcgatcatga 1158
>gb|AE016959.3 | Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 139 bits (70), Expect = 1e-29
Identities = 134/156 (85%), Gaps = 6/156 (3%)
Strand = Plus / Plus
Query: 532 atccctaccacggtccctatccctatctctgtcccgacgatcacg------gtcacggtc 585
||||| |||||| ||||| ||||||||||| || ||||||||||| |||||||||
Sbjct: 987431 atcccgaccacgatccctgtccctatctctatcacgacgatcacgctcacggtcacggtc 987490
Query: 586 acgcccatggtctttttcccggtcccttcctcggtccctgtcccgagtcctgtcccgatc 645
||| ||||| ||| | ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 987491 acgaccatgatctctctcccggtcccttcctcgttccctgtcccgagtcctgtcccgatc 987550
Query: 646 tctatggtggtgcctctcttnccttgaatcacgctc 681
||||||||||| || |||| |||||||||||||
Sbjct: 987551 cctatggtggtgtctatcttcttttgaatcacgctc 987586
Score = 135 bits (68), Expect = 2e-28
Identities = 137/158 (86%), Gaps = 4/158 (2%)
Strand = Plus / Plus
Query: 113 aaaacttactgcagtaatcaagcttcagtcttt-tgctcttctgctgcttggtgatactg 171
|||||||||||||| |||||| |||||| || ||||| || || ||||||||||||||
Sbjct: 987065 aaaacttactgcagcaatcaaatttcagttattgtgctcatcagcagcttggtgatactg 987124
Query: 172 gtagtcaccttcctcgtatgcctcaccttcctcagggccttcaggttctgtgttg---gg 228
|||||||||||| || |||||||| || || |||||||||||||||||||||||| ||
Sbjct: 987125 gtagtcaccttcatcatatgcctcgccctcttcagggccttcaggttctgtgttgttagg 987184
Query: 229 ttgtgcctgatagtactcatgctcatgtctctttgagc 266
||| ||||||||||||||||||||||| ||||||||
Sbjct: 987185 ttgcatctgatagtactcatgctcatgtcgctttgagc 987222
Score = 75.8 bits (38), Expect = 2e-10
Identities = 68/78 (87%)
Strand = Plus / Plus
Query: 425 tgaccgcggtcacgttcgtaacttgcacgcccatcatctctctcacgatccctgcctctc 484
||||| ||||| ||||| | |||||||||| | | |||||||||||| ||||||||||||
Sbjct: 987330 tgaccacggtcccgttcatgacttgcacgctcgtaatctctctcacggtccctgcctctc 987389
Query: 485 tcacggtgacgatcatga 502
||||| || |||||||||
Sbjct: 987390 tcacgatggcgatcatga 987407
>gb|AC154859.2 | Mus musculus BAC clone RP23-14B14 from chromosome 16, complete sequence
Length = 200016
Score = 46.1 bits (23), Expect = 0.15
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 544 gtccctatccctatctctgtccc 566
|||||||||||||||||||||||
Sbjct: 103842 gtccctatccctatctctgtccc 103864
Score = 46.1 bits (23), Expect = 0.15
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 544 gtccctatccctatctctgtccc 566
|||||||||||||||||||||||
Sbjct: 103824 gtccctatccctatctctgtccc 103846
Score = 46.1 bits (23), Expect = 0.15
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 544 gtccctatccctatctctgtccc 566
|||||||||||||||||||||||
Sbjct: 103806 gtccctatccctatctctgtccc 103828
Score = 46.1 bits (23), Expect = 0.15
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 544 gtccctatccctatctctgtccc 566
|||||||||||||||||||||||
Sbjct: 103788 gtccctatccctatctctgtccc 103810
Score = 46.1 bits (23), Expect = 0.15
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 544 gtccctatccctatctctgtccc 566
|||||||||||||||||||||||
Sbjct: 103770 gtccctatccctatctctgtccc 103792
>gb|AC018836.5 | Homo sapiens chromosome 3 clone RP11-588P9 map 3p, complete sequence
Length = 184716
Score = 40.1 bits (20), Expect = 9.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 544 gtccctatccctatctctgt 563
||||||||||||||||||||
Sbjct: 94612 gtccctatccctatctctgt 94631
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,552,492
Number of Sequences: 3902068
Number of extensions: 5552492
Number of successful extensions: 133817
Number of sequences better than 10.0: 93
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 133339
Number of HSP's gapped (non-prelim): 463
length of query: 685
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 662
effective length of database: 17,143,297,704
effective search space: 11348863080048
effective search space used: 11348863080048
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)