ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd18p20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CPR4_ARATH (Q9SUS9) Probable cysteine proteinase At4g11320 precu... 30 1.3
2CPR3_ARATH (Q9SUT0) Probable cysteine proteinase At4g11310 precu... 30 1.3
3CYSP_HEMSP (P43156) Thiol protease SEN102 precursor (EC 3.4.22.-) 29 2.9
4CYSEP_RICCO (O65039) Vignain precursor (EC 3.4.22.-) (Cysteine e... 29 2.9

>CPR4_ARATH (Q9SUS9) Probable cysteine proteinase At4g11320 precursor (EC|
           3.4.22.-)
          Length = 371

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 204 MRRGADGPRGLCGMAMYGAYPV 139
           M R    PRGLCG+AM  +YP+
Sbjct: 338 MARNIANPRGLCGIAMRASYPL 359



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>CPR3_ARATH (Q9SUT0) Probable cysteine proteinase At4g11310 precursor (EC|
           3.4.22.-)
          Length = 364

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 204 MRRGADGPRGLCGMAMYGAYPV 139
           M R    PRGLCG+AM  +YP+
Sbjct: 331 MARNIANPRGLCGIAMRASYPL 352



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>CYSP_HEMSP (P43156) Thiol protease SEN102 precursor (EC 3.4.22.-)|
          Length = 360

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 204 MRRGADGPRGLCGMAMYGAYPV 139
           M+RG    RG CG+AM  +YP+
Sbjct: 324 MQRGISDKRGKCGIAMEASYPI 345



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>CYSEP_RICCO (O65039) Vignain precursor (EC 3.4.22.-) (Cysteine endopeptidase)|
          Length = 360

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 204 MRRGADGPRGLCGMAMYGAYPV 139
           M RG     GLCG+AM  +YP+
Sbjct: 321 MERGISDKEGLCGIAMEASYPI 342


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,220,279
Number of Sequences: 219361
Number of extensions: 611419
Number of successful extensions: 1252
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1252
length of database: 80,573,946
effective HSP length: 43
effective length of database: 71,141,423
effective search space used: 1707394152
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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