ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd18p19 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK108782.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-151-A06, full insert sequence Length = 2081 Score = 305 bits (154), Expect = 1e-79 Identities = 223/246 (90%) Strand = Plus / Minus Query: 322 ctcatgactgaagaagtccgtccccttcccagccaaggcgtagcatctgatccactacct 381 |||||||||||||||| ||||| |||||||| ||||| |||| ||||||||||||||||| Sbjct: 1603 ctcatgactgaagaagcccgtcaccttcccaaccaagacgtaacatctgatccactacct 1544 Query: 382 tcaagctcaaagcaggatcagtgaacaccattagacccttatcagcagtagaaactagaa 441 |||||||||||||||||||||||||||| ||||| ||||||||||||||| | ||||| Sbjct: 1543 tcaagctcaaagcaggatcagtgaacactattagctgcttatcagcagtagacagtagaa 1484 Query: 442 gattagtgttctctttgtttaatgcaattgctgtgatgtcctggccctttcccagctcca 501 |||| |||||||||||||||| || |||||||||| ||||||||| || |||||||||| Sbjct: 1483 gatttgtgttctctttgtttagagcgattgctgtgacgtcctggcctttccccagctcca 1424 Query: 502 gtgtatgaaataccttaagtttatgcagatcaacgaagcagatcgaaggcacatgaacag 561 ||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||| Sbjct: 1423 ttgtatgaaataccttaagtttatgcagatcaacaaagcatacagaaggcacatgaacag 1364 Query: 562 attgcc 567 |||||| Sbjct: 1363 attgcc 1358 Score = 93.7 bits (47), Expect = 8e-16 Identities = 112/134 (83%) Strand = Plus / Minus Query: 611 cccaggctcagtattgtcctcgcacttgtaatggctggatgaacaagttccgatgagggc 670 ||||| ||||||| ||||||| ||||| |||| ||| || ||||| ||||| || | ||| Sbjct: 1299 cccagtctcagtactgtcctcacacttataattgcttgaagaacatgttcccattaaggc 1240 Query: 671 aaaatggccatccatagaaatctcaatgcaactaactcccccagaaaagggtgatagaac 730 ||||||||||| |||||||||||||||||||||| | ||| |||| ||||||||||| Sbjct: 1239 gaaatggccatcagtagaaatctcaatgcaactaacccgtccacaaaaaggtgatagaac 1180 Query: 731 tgangtggcaatag 744 || || ||||||| Sbjct: 1179 tgtggtagcaatag 1166
>ref|XM_473454.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 8673 Score = 303 bits (153), Expect = 4e-79 Identities = 222/245 (90%) Strand = Plus / Minus Query: 323 tcatgactgaagaagtccgtccccttcccagccaaggcgtagcatctgatccactacctt 382 ||||||||||||||| ||||| |||||||| ||||| |||| |||||||||||||||||| Sbjct: 8673 tcatgactgaagaagcccgtcaccttcccaaccaagacgtaacatctgatccactacctt 8614 Query: 383 caagctcaaagcaggatcagtgaacaccattagacccttatcagcagtagaaactagaag 442 ||||||||||||||||||||||||||| ||||| ||||||||||||||| | |||||| Sbjct: 8613 caagctcaaagcaggatcagtgaacactattagctgcttatcagcagtagacagtagaag 8554 Query: 443 attagtgttctctttgtttaatgcaattgctgtgatgtcctggccctttcccagctccag 502 ||| |||||||||||||||| || |||||||||| ||||||||| || |||||||||| Sbjct: 8553 atttgtgttctctttgtttagagcgattgctgtgacgtcctggcctttccccagctccat 8494 Query: 503 tgtatgaaataccttaagtttatgcagatcaacgaagcagatcgaaggcacatgaacaga 562 ||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||| Sbjct: 8493 tgtatgaaataccttaagtttatgcagatcaacaaagcatacagaaggcacatgaacaga 8434 Query: 563 ttgcc 567 ||||| Sbjct: 8433 ttgcc 8429 Score = 93.7 bits (47), Expect = 8e-16 Identities = 112/134 (83%) Strand = Plus / Minus Query: 611 cccaggctcagtattgtcctcgcacttgtaatggctggatgaacaagttccgatgagggc 670 ||||| ||||||| ||||||| ||||| |||| ||| || ||||| ||||| || | ||| Sbjct: 8370 cccagtctcagtactgtcctcacacttataattgcttgaagaacatgttcccattaaggc 8311 Query: 671 aaaatggccatccatagaaatctcaatgcaactaactcccccagaaaagggtgatagaac 730 ||||||||||| |||||||||||||||||||||| | ||| |||| ||||||||||| Sbjct: 8310 gaaatggccatcagtagaaatctcaatgcaactaacccgtccacaaaaaggtgatagaac 8251 Query: 731 tgangtggcaatag 744 || || ||||||| Sbjct: 8250 tgtggtagcaatag 8237
>gb|AY110836.1| Zea mays CL36054_1 mRNA sequence Length = 1291 Score = 190 bits (96), Expect = 5e-45 Identities = 205/243 (84%) Strand = Plus / Plus Query: 323 tcatgactgaagaagtccgtccccttcccagccaaggcgtagcatctgatccactacctt 382 |||| ||||||| || || || |||||||||||||| || |||||||||||||| ||||| Sbjct: 188 tcattactgaagtaggccatcaccttcccagccaagccgcagcatctgatccaccacctt 247 Query: 383 caagctcaaagcaggatcagtgaacaccattagacccttatcagcagtagaaactagaag 442 |||||||||||| |||||||| || || || || ||||||||||||||||||| ||| Sbjct: 248 caagctcaaagcgggatcagtaaagactataagctgtttatcagcagtagaaactaaaag 307 Query: 443 attagtgttctctttgtttaatgcaattgctgtgatgtcctggccctttcccagctccag 502 ||| | |||||||||||||| |||||||||| |||||||||||||||| |||||| ||| Sbjct: 308 atttgggttctctttgtttagagcaattgctgggatgtcctggccctttgccagcttcag 367 Query: 503 tgtatgaaataccttaagtttatgcagatcaacgaagcagatcgaaggcacatgaacaga 562 ||||| |||| ||| ||||||| ||||| |||||||| |||||| | |||||||| Sbjct: 368 agtatgnnnnnccttcagtgtatgcaggtcaacaaagcagattgaaggcgcgtgaacaga 427 Query: 563 ttg 565 ||| Sbjct: 428 ttg 430
>emb|AL606647.3|OSJN00096 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E24, complete sequence Length = 127506 Score = 139 bits (70), Expect = 1e-29 Identities = 115/130 (88%) Strand = Plus / Plus Query: 387 ctcaaagcaggatcagtgaacaccattagacccttatcagcagtagaaactagaagatta 446 |||| |||||||||||||||||| ||||| ||||||||||||||| | ||||||||| Sbjct: 38458 ctcacagcaggatcagtgaacactattagctgcttatcagcagtagacagtagaagattt 38517 Query: 447 gtgttctctttgtttaatgcaattgctgtgatgtcctggccctttcccagctccagtgta 506 |||||||||||||||| || |||||||||| ||||||||| || |||||||||| |||| Sbjct: 38518 gtgttctctttgtttagagcgattgctgtgacgtcctggcctttccccagctccattgta 38577 Query: 507 tgaaatacct 516 |||||||||| Sbjct: 38578 tgaaatacct 38587 Score = 99.6 bits (50), Expect = 1e-17 Identities = 65/70 (92%) Strand = Plus / Plus Query: 322 ctcatgactgaagaagtccgtccccttcccagccaaggcgtagcatctgatccactacct 381 |||||||||||||||| ||||| |||||||| ||||| |||| ||||||||||||||||| Sbjct: 38283 ctcatgactgaagaagcccgtcaccttcccaaccaagacgtaacatctgatccactacct 38342 Query: 382 tcaagctcaa 391 |||||||||| Sbjct: 38343 tcaagctcaa 38352 Score = 93.7 bits (47), Expect = 8e-16 Identities = 112/134 (83%) Strand = Plus / Plus Query: 611 cccaggctcagtattgtcctcgcacttgtaatggctggatgaacaagttccgatgagggc 670 ||||| ||||||| ||||||| ||||| |||| ||| || ||||| ||||| || | ||| Sbjct: 38777 cccagtctcagtactgtcctcacacttataattgcttgaagaacatgttcccattaaggc 38836 Query: 671 aaaatggccatccatagaaatctcaatgcaactaactcccccagaaaagggtgatagaac 730 ||||||||||| |||||||||||||||||||||| | ||| |||| ||||||||||| Sbjct: 38837 gaaatggccatcagtagaaatctcaatgcaactaacccgtccacaaaaaggtgatagaac 38896 Query: 731 tgangtggcaatag 744 || || ||||||| Sbjct: 38897 tgtggtagcaatag 38910 Score = 77.8 bits (39), Expect = 5e-11 Identities = 51/55 (92%) Strand = Plus / Plus Query: 513 accttaagtttatgcagatcaacgaagcagatcgaaggcacatgaacagattgcc 567 ||||||||||||||||||||||| ||||| | |||||||||||||||||||||| Sbjct: 38664 accttaagtttatgcagatcaacaaagcatacagaaggcacatgaacagattgcc 38718
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 139 bits (70), Expect = 1e-29 Identities = 115/130 (88%) Strand = Plus / Plus Query: 387 ctcaaagcaggatcagtgaacaccattagacccttatcagcagtagaaactagaagatta 446 |||| |||||||||||||||||| ||||| ||||||||||||||| | ||||||||| Sbjct: 27769790 ctcacagcaggatcagtgaacactattagctgcttatcagcagtagacagtagaagattt 27769849 Query: 447 gtgttctctttgtttaatgcaattgctgtgatgtcctggccctttcccagctccagtgta 506 |||||||||||||||| || |||||||||| ||||||||| || |||||||||| |||| Sbjct: 27769850 gtgttctctttgtttagagcgattgctgtgacgtcctggcctttccccagctccattgta 27769909 Query: 507 tgaaatacct 516 |||||||||| Sbjct: 27769910 tgaaatacct 27769919 Score = 99.6 bits (50), Expect = 1e-17 Identities = 65/70 (92%) Strand = Plus / Plus Query: 322 ctcatgactgaagaagtccgtccccttcccagccaaggcgtagcatctgatccactacct 381 |||||||||||||||| ||||| |||||||| ||||| |||| ||||||||||||||||| Sbjct: 27769615 ctcatgactgaagaagcccgtcaccttcccaaccaagacgtaacatctgatccactacct 27769674 Query: 382 tcaagctcaa 391 |||||||||| Sbjct: 27769675 tcaagctcaa 27769684 Score = 93.7 bits (47), Expect = 8e-16 Identities = 112/134 (83%) Strand = Plus / Plus Query: 611 cccaggctcagtattgtcctcgcacttgtaatggctggatgaacaagttccgatgagggc 670 ||||| ||||||| ||||||| ||||| |||| ||| || ||||| ||||| || | ||| Sbjct: 27770109 cccagtctcagtactgtcctcacacttataattgcttgaagaacatgttcccattaaggc 27770168 Query: 671 aaaatggccatccatagaaatctcaatgcaactaactcccccagaaaagggtgatagaac 730 ||||||||||| |||||||||||||||||||||| | ||| |||| ||||||||||| Sbjct: 27770169 gaaatggccatcagtagaaatctcaatgcaactaacccgtccacaaaaaggtgatagaac 27770228 Query: 731 tgangtggcaatag 744 || || ||||||| Sbjct: 27770229 tgtggtagcaatag 27770242 Score = 77.8 bits (39), Expect = 5e-11 Identities = 51/55 (92%) Strand = Plus / Plus Query: 513 accttaagtttatgcagatcaacgaagcagatcgaaggcacatgaacagattgcc 567 ||||||||||||||||||||||| ||||| | |||||||||||||||||||||| Sbjct: 27769996 accttaagtttatgcagatcaacaaagcatacagaaggcacatgaacagattgcc 27770050
>ref|NM_130116.2| Arabidopsis thaliana nucleotide binding AT2G45540 mRNA, complete cds Length = 10217 Score = 56.0 bits (28), Expect = 2e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 363 agcatctgatccactaccttcaagctcaaagcaggatcagtgaa 406 |||||||||||||| ||||| ||||| ||||| ||||||||||| Sbjct: 8822 agcatctgatccaccacctttaagcttaaagccggatcagtgaa 8779
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 56.0 bits (28), Expect = 2e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 677 gccatccatagaaatctcaatgcaactaactc 708 |||||||| ||||||||||||||||||||||| Sbjct: 26886117 gccatccacagaaatctcaatgcaactaactc 26886148 Score = 50.1 bits (25), Expect = 0.011 Identities = 46/53 (86%) Strand = Plus / Plus Query: 423 tcagcagtagaaactagaagattagtgttctctttgtttaatgcaattgctgt 475 ||||| || ||||| |||||||||||||| ||||| | ||| ||||||||||| Sbjct: 26885762 tcagctgtcgaaacaagaagattagtgttatctttctgtaacgcaattgctgt 26885814 Score = 46.1 bits (23), Expect = 0.17 Identities = 32/35 (91%) Strand = Plus / Plus Query: 528 agatcaacgaagcagatcgaaggcacatgaacaga 562 ||||||| |||||||| ||| |||||||||||||| Sbjct: 26885953 agatcaatgaagcagaccgagggcacatgaacaga 26885987
>dbj|AP004037.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1001_D02 Length = 129081 Score = 56.0 bits (28), Expect = 2e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 677 gccatccatagaaatctcaatgcaactaactc 708 |||||||| ||||||||||||||||||||||| Sbjct: 64660 gccatccacagaaatctcaatgcaactaactc 64691 Score = 50.1 bits (25), Expect = 0.011 Identities = 46/53 (86%) Strand = Plus / Plus Query: 423 tcagcagtagaaactagaagattagtgttctctttgtttaatgcaattgctgt 475 ||||| || ||||| |||||||||||||| ||||| | ||| ||||||||||| Sbjct: 64305 tcagctgtcgaaacaagaagattagtgttatctttctgtaacgcaattgctgt 64357 Score = 46.1 bits (23), Expect = 0.17 Identities = 32/35 (91%) Strand = Plus / Plus Query: 528 agatcaacgaagcagatcgaaggcacatgaacaga 562 ||||||| |||||||| ||| |||||||||||||| Sbjct: 64496 agatcaatgaagcagaccgagggcacatgaacaga 64530
>emb|BX821186.1|CNS0A96K Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL22ZH04 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 473 Score = 48.1 bits (24), Expect = 0.042 Identities = 39/44 (88%) Strand = Plus / Minus Query: 363 agcatctgatccactaccttcaagctcaaagcaggatcagtgaa 406 ||||||| |||||| ||||| ||||| ||||| ||||||||||| Sbjct: 58 agcatcttatccaccacctttaagcttaaagccggatcagtgaa 15
>gb|CP000030.1| Anaplasma marginale str. St. Maries, complete genome Length = 1197687 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 79 gcagcgctgatgcaacaatag 99 ||||||||||||||||||||| Sbjct: 1160063 gcagcgctgatgcaacaatag 1160043 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,976,588 Number of Sequences: 3902068 Number of extensions: 5976588 Number of successful extensions: 113063 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 112978 Number of HSP's gapped (non-prelim): 84 length of query: 744 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 721 effective length of database: 17,143,297,704 effective search space: 12360317644584 effective search space used: 12360317644584 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
