ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd19e24 |
|---|---|
| Clone Library Name | barley_pub |
>PAB2_SCHPO (O14327) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (Poly(A)-binding protein II) (PABII) Length = 166 Score = 121 bits (304), Expect = 8e-28 Identities = 67/129 (51%), Positives = 83/129 (64%), Gaps = 2/129 (1%) Frame = -2 Query: 472 MEEEXXALREMQAKVAKEMQGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNS 293 ME E LR MQ ++ E + KE +D++SV+VGNV Y+ TPEE+Q HF S Sbjct: 24 MEAEAAKLRAMQEQLDNETEA------LRNDKESIDAQSVYVGNVDYSVTPEELQSHFAS 77 Query: 292 CGXVXRVTILXXKF-GQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAPKRTNVPGL 116 CG V RVTIL KF G PKGFAY+EF E + A+ L+ S LH R +KV PKRTNVPG+ Sbjct: 78 CGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLHERPLKVTPKRTNVPGM 137 Query: 115 KQPRG-GRG 92 + RG GRG Sbjct: 138 SRGRGRGRG 146
>PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 120 bits (302), Expect = 1e-27 Identities = 66/135 (48%), Positives = 84/135 (62%), Gaps = 7/135 (5%) Frame = -2 Query: 472 MEEEXXALREMQAKVAKEMQGGDPNAXXS------EAKEEMDSRSVFVGNVXYACTPEEV 311 MEEE L+E+Q +V K+M P E K E D+RS++VGNV Y T EE+ Sbjct: 128 MEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEEL 187 Query: 310 QQHFNSCGXVXRVTILXXKF-GQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAPKR 134 + HF+ CG V RVTIL KF G PKGFAY+EF + E+++ ++ L ES GRQIKV PKR Sbjct: 188 EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKR 247 Query: 133 TNVPGLKQPRGGRGF 89 TN PG+ RGF Sbjct: 248 TNRPGISTT--DRGF 260
>PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA-binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 120 bits (302), Expect = 1e-27 Identities = 66/135 (48%), Positives = 84/135 (62%), Gaps = 7/135 (5%) Frame = -2 Query: 472 MEEEXXALREMQAKVAKEMQGGDPNAXXS------EAKEEMDSRSVFVGNVXYACTPEEV 311 MEEE L+E+Q +V K+M P E K E D+RS++VGNV Y T EE+ Sbjct: 128 MEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEEL 187 Query: 310 QQHFNSCGXVXRVTILXXKF-GQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAPKR 134 + HF+ CG V RVTIL KF G PKGFAY+EF + E+++ ++ L ES GRQIKV PKR Sbjct: 188 EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKR 247 Query: 133 TNVPGLKQPRGGRGF 89 TN PG+ RGF Sbjct: 248 TNRPGISTT--DRGF 260
>PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 301 Score = 120 bits (302), Expect = 1e-27 Identities = 66/135 (48%), Positives = 84/135 (62%), Gaps = 7/135 (5%) Frame = -2 Query: 472 MEEEXXALREMQAKVAKEMQGGDPNAXXS------EAKEEMDSRSVFVGNVXYACTPEEV 311 MEEE L+E+Q +V K+M P E K E D+RS++VGNV Y T EE+ Sbjct: 124 MEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSLEEKMEADARSIYVGNVDYGATAEEL 183 Query: 310 QQHFNSCGXVXRVTILXXKF-GQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAPKR 134 + HF+ CG V RVTIL KF G PKGFAY+EF + E+++ ++ L ES GRQIKV PKR Sbjct: 184 EAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKR 243 Query: 133 TNVPGLKQPRGGRGF 89 TN PG+ RGF Sbjct: 244 TNRPGISTT--DRGF 256
>YQOC_CAEEL (Q09301) Putative RNA-binding protein EEED8.12| Length = 197 Score = 91.7 bits (226), Expect = 9e-19 Identities = 46/120 (38%), Positives = 73/120 (60%), Gaps = 1/120 (0%) Frame = -2 Query: 472 MEEEXXALREMQAKVAKEMQGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNS 293 +E E L ++Q K+AK ++ E ++ +D++SVF+GNV + T EEV++HF Sbjct: 24 IEAESAILEQIQNKMAKNLESAAYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEVEEHFKG 83 Query: 292 CGXVXRVTILXXKF-GQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAPKRTNVPGL 116 CG + R TI KF + K FAY+EF ++ +I+ A+ ++ S R I V KRTN+PG+ Sbjct: 84 CGHIVRTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRTNIPGM 143
>YQO4_CAEEL (Q09295) Putative RNA-binding protein EEED8.4| Length = 237 Score = 90.5 bits (223), Expect = 2e-18 Identities = 44/120 (36%), Positives = 74/120 (61%), Gaps = 1/120 (0%) Frame = -2 Query: 472 MEEEXXALREMQAKVAKEMQGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNS 293 +E E L+++Q K+AK ++ E ++ +D++SVF+GNV + T EE+++HF Sbjct: 64 IEAESAILQQIQNKMAKHLESAAYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEIEEHFKG 123 Query: 292 CGXVXRVTILXXKF-GQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAPKRTNVPGL 116 CG + + TI KF + K FAY+EF ++ +I+ A+ ++ S R I V KRTN+PG+ Sbjct: 124 CGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRTNIPGM 183
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 89.4 bits (220), Expect = 4e-18 Identities = 46/120 (38%), Positives = 69/120 (57%), Gaps = 8/120 (6%) Frame = -2 Query: 445 EMQAKVAKEMQGGDPNAXXSEAKEEM-------DSRSVFVGNVXYACTPEEVQQHFNSCG 287 E+ V K G P +KEE DSRS+FVGN+ TPE+++ HF CG Sbjct: 29 ELDELVGKLSIEGTPQVSQKLSKEEKHAHQLEADSRSIFVGNITPDVTPEQIEDHFKDCG 88 Query: 286 XVXRVTILXXK-FGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAPKRTNVPGLKQ 110 + R+T+L + G PKG+ Y+EF ++A++L+ EL G++I V+ KRTN+PG + Sbjct: 89 QIKRITLLYDRNTGTPKGYGYIEFESPAYREKALQLNGGELKGKKIAVSRKRTNIPGFNR 148
>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 428 Score = 67.4 bits (163), Expect = 2e-11 Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 1/121 (0%) Frame = -2 Query: 469 EEEXXALREMQAKVAKEMQGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSC 290 +EE A + +Q A+ +G + D RSVFVGN+ Y +++HF C Sbjct: 249 KEERAAAKALQRNGAQIAEGFRIRVDLASETASRDKRSVFVGNLPYRVDESALEEHFLDC 308 Query: 289 GXVXRVTILXXKF-GQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAPKRTNVPGLK 113 G + V I+ G +GF YV F +A+ A+KL+ SEL GR+++V + N LK Sbjct: 309 GSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLNNSELMGRKLRVM-RSVNKEKLK 367 Query: 112 Q 110 Q Sbjct: 368 Q 368
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 66.6 bits (161), Expect = 3e-11 Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 1/109 (0%) Frame = -2 Query: 469 EEEXXALREMQAKVAKEMQGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSC 290 +EE A + ++ A+ G + D RSVFVGN+ Y +++HF C Sbjct: 251 KEESAATQALKRNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVEESAIEKHFLDC 310 Query: 289 GXVXRVTILXXKF-GQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 146 G + V I+ K G KGF YV F +++ A+KL+ SEL GR+++V Sbjct: 311 GSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLRV 359
>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 375 Score = 66.6 bits (161), Expect = 3e-11 Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 1/121 (0%) Frame = -2 Query: 469 EEEXXALREMQAKVAKEMQGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSC 290 ++E A + +Q A+ +G + D RSVFVGN+ Y +++HF C Sbjct: 255 KDESAAAKALQRNGAQIAEGFRIRVDLASETASRDKRSVFVGNLPYKIEDSALEEHFLDC 314 Query: 289 GXVXRVTILXXKF-GQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAPKRTNVPGLK 113 G + V I+ G +GF YV F +A+ A+KL+ SEL GR+++V + N LK Sbjct: 315 GSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLNNSELMGRKLRVM-RSVNKEKLK 373 Query: 112 Q 110 Q Sbjct: 374 Q 374
>NOP12_KLULA (Q6CKV6) Nucleolar protein 12| Length = 524 Score = 53.9 bits (128), Expect = 2e-07 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Frame = -2 Query: 361 RSVFVGNVXYACTPEEVQQHFNSCGXVXRVTIL-XXKFGQPKGFAYVEFVEAEAIQEAVK 185 RSVFVGN+ + E + +HF CG + V I+ K KGFAYV+F + +++ +A+ Sbjct: 359 RSVFVGNLDFEEVEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDFQSVSKALL 418 Query: 184 LSESELH 164 L E ++H Sbjct: 419 LHEKKIH 425
>NOP12_CANGA (Q6FUS6) Nucleolar protein 12| Length = 396 Score = 53.1 bits (126), Expect = 3e-07 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Frame = -2 Query: 361 RSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXX-KFGQPKGFAYVEFVEAEAIQEAVK 185 RSVFVGN+ + E + +HF +CG + V I+ K KGFAYV+F E +++ +A+ Sbjct: 228 RSVFVGNLDFEEDEESLWKHFGACGSIEYVRIVRDPKTNMGKGFAYVQFNELQSVSKALL 287 Query: 184 LSESELHGRQIKVAPKRTNVPGLKQPR 104 L+E + + + ++ V K R Sbjct: 288 LNEKPMISQNEHLKKRKLRVTRCKNIR 314
>DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)| Length = 289 Score = 52.8 bits (125), Expect = 5e-07 Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 3/88 (3%) Frame = -2 Query: 358 SVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVKLS 179 +VFVG + E++ +F G V V I+ + G KG+ +V F++ +Q+ V+ S Sbjct: 37 TVFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDRTGVSKGYGFVSFLDNVDVQKIVE-S 95 Query: 178 ESELHGRQIKVAP---KRTNVPGLKQPR 104 + +HG+++K+ P K+ N+ QPR Sbjct: 96 QISVHGKRLKLGPAIRKQQNLCSYMQPR 123
>NOP12_ASHGO (Q75BJ7) Nucleolar protein 12| Length = 426 Score = 51.6 bits (122), Expect = 1e-06 Identities = 28/76 (36%), Positives = 48/76 (63%), Gaps = 4/76 (5%) Frame = -2 Query: 361 RSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXX-KFGQPKGFAYVEFVEAEAIQEAVK 185 RSVFVGN+ + + E + +HF SCG + V I+ K KGFAYV+F + ++ +A+ Sbjct: 259 RSVFVGNLDFEESEESLWKHFMSCGPIEYVRIVRDPKTNVGKGFAYVQFADLVSVNKALL 318 Query: 184 LSESEL---HGRQIKV 146 L++ ++ GR+++V Sbjct: 319 LNDKKMAVGKGRKLRV 334
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 51.6 bits (122), Expect = 1e-06 Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 1/73 (1%) Frame = -2 Query: 358 SVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVKLS 179 +++V NV A T EE+++HF+ CG + ++ + G+ KGF +V F E +AVK Sbjct: 305 NIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTF 364 Query: 178 ESEL-HGRQIKVA 143 ++ HG+ + VA Sbjct: 365 HGQMFHGKPLYVA 377
>NOP12_YEAST (Q08208) Nucleolar protein 12| Length = 459 Score = 50.8 bits (120), Expect = 2e-06 Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 1/70 (1%) Frame = -2 Query: 361 RSVFVGNVXYACTPEEVQQHFNSCGXVXRVTIL-XXKFGQPKGFAYVEFVEAEAIQEAVK 185 RS+FVGN+ + E + +HF CG + V I+ K KGFAYV+F + +++ +A+ Sbjct: 279 RSIFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDLQSVNKALL 338 Query: 184 LSESELHGRQ 155 L+E + ++ Sbjct: 339 LNEKPMKSQK 348
>SART3_PONPY (Q5REG1) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) Length = 981 Score = 50.4 bits (119), Expect = 2e-06 Identities = 28/97 (28%), Positives = 52/97 (53%), Gaps = 4/97 (4%) Frame = -2 Query: 370 MDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFV-EAEAIQE 194 ++ +F+ + ++CT EE+++ + G V + ++ + G+PKG AYVE+ E++A Q Sbjct: 816 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQA 875 Query: 193 AVKLSESELHGRQIKVA---PKRTNVPGLKQPRGGRG 92 +K+ + IKVA P + VP + R G Sbjct: 876 VMKMDGMTIKENVIKVAISNPPQRKVPEKPETRKAPG 912 Score = 45.8 bits (107), Expect = 6e-05 Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 2/78 (2%) Frame = -2 Query: 367 DSRSVFVGNVXYACTPEEVQQH--FNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQE 194 DS +VFV N+ Y+ + + F +CG V ++ + G +G+ YVEF E ++ + Sbjct: 720 DSITVFVSNLPYSMQEPDAKLRPLFEACGEVVQIRPIFSNRGDFRGYRYVEFKEEKSALQ 779 Query: 193 AVKLSESELHGRQIKVAP 140 A+++ + GR + V+P Sbjct: 780 ALEMDRKSVEGRPMFVSP 797
>SART3_MOUSE (Q9JLI8) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) (mSART-3) (Tumor-rejection antigen SART3) Length = 962 Score = 50.1 bits (118), Expect = 3e-06 Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 2/102 (1%) Frame = -2 Query: 439 QAKVAKEMQGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQH--FNSCGXVXRVTI 266 Q + A ++ P +K DS +VFV N+ Y+ EV+ F CG V ++ Sbjct: 681 QKEKAASLKRDMPKVAHDSSK---DSVTVFVSNLPYSIEEPEVKLRPLFEVCGEVVQIRP 737 Query: 265 LXXKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAP 140 + G +G+ YVEF E ++ Q+A++L + GR + V+P Sbjct: 738 IFSNRGDFRGYCYVEFGEEKSAQQALELDRKIVEGRPMFVSP 779 Score = 49.7 bits (117), Expect = 4e-06 Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 4/97 (4%) Frame = -2 Query: 370 MDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFV-EAEAIQE 194 ++ +F+ + ++CT EE++ + G V + ++ + G+PKG AYVE+ E++A Q Sbjct: 798 LEKHKLFISGLPFSCTKEELEDICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQA 857 Query: 193 AVKLSESELHGRQIKVA---PKRTNVPGLKQPRGGRG 92 +K+ + IKVA P + VP + R G Sbjct: 858 VMKMDGMTIRENVIKVAISNPPQRKVPEKPEVRTAPG 894
>SART3_HUMAN (Q15020) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) (hSART-3) (Tat-interacting protein of 110 kDa) (Tip110) Length = 963 Score = 50.1 bits (118), Expect = 3e-06 Identities = 28/97 (28%), Positives = 52/97 (53%), Gaps = 4/97 (4%) Frame = -2 Query: 370 MDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFV-EAEAIQE 194 ++ +F+ + ++CT EE+++ + G V + ++ + G+PKG AYVE+ E++A Q Sbjct: 798 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQA 857 Query: 193 AVKLSESELHGRQIKVA---PKRTNVPGLKQPRGGRG 92 +K+ + IKVA P + VP + R G Sbjct: 858 VMKMDGMTIKENIIKVAISNPPQRKVPEKPETRKAPG 894 Score = 46.2 bits (108), Expect = 4e-05 Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 2/78 (2%) Frame = -2 Query: 367 DSRSVFVGNVXYACTPEEVQQH--FNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQE 194 DS +VFV N+ Y+ + + F +CG V ++ + G +G+ YVEF E ++ + Sbjct: 702 DSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNRGDFRGYCYVEFKEEKSALQ 761 Query: 193 AVKLSESELHGRQIKVAP 140 A+++ + GR + V+P Sbjct: 762 ALEMDRKSVEGRPMFVSP 779
>NOP12_SCHPO (O13741) Nucleolar protein 12| Length = 438 Score = 49.7 bits (117), Expect = 4e-06 Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 2/82 (2%) Frame = -2 Query: 361 RSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXX-KFGQPKGFAYVEFVEAEAIQEAVK 185 R VFVGN+ + E + ++F CG + V I+ K KGFAY++F + + +A+ Sbjct: 270 RCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALL 329 Query: 184 LSESEL-HGRQIKVAPKRTNVP 122 L+E ++ GR +++ ++ P Sbjct: 330 LNEKKMPEGRTLRIMRAKSTKP 351
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 49.7 bits (117), Expect = 4e-06 Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 2/110 (1%) Frame = -2 Query: 469 EEEXXALREMQ--AKVAKEMQGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFN 296 EE+ E Q AK KEM P A ++ + S+F+GN+ +E++ Sbjct: 194 EEDDDDEEEQQGSAKRKKEMPKTIPEAKKTKTDTASEGLSIFIGNLNSTKEFDELKDALR 253 Query: 295 SCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 146 +TI + G K F YV+F E +++A+KL+ ++ G ++K+ Sbjct: 254 EFFSKKNLTIQDIRIGNSKKFGYVDFSSEEEVEKALKLTGKKILGTEVKI 303 Score = 43.1 bits (100), Expect = 4e-04 Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 10/134 (7%) Frame = -2 Query: 463 EXXALREMQAKVAKEMQG--------GDPNAXXSEAK-EEMDSRSVFVGNVXYACTPEEV 311 E A + ++ K E++G G+ + K E DS+ + V N+ Y+ T + + Sbjct: 371 EDEANKALEEKQGAEIEGRSIFVDFTGEKSQNSGNKKGPEGDSKVLVVNNLSYSATEDSL 430 Query: 310 QQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAV-KLSESELHGRQIKVAPKR 134 ++ F + + G+ KGFA++EF AE ++A+ + +E+ GR I++ + Sbjct: 431 REVFEKATSIR----IPQNQGRAKGFAFIEFSSAEDAKDAMDSCNNTEIEGRSIRLEFSQ 486 Query: 133 TNVPGLKQPRGGRG 92 P GGRG Sbjct: 487 GGGP----QGGGRG 496 Score = 35.8 bits (81), Expect = 0.058 Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 1/109 (0%) Frame = -2 Query: 415 QGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKG 236 QGG P + S+++FV + T E +++ F+ G V + G KG Sbjct: 486 QGGGPQGGGRGGSAQ--SKTLFVRGLSEDTTEETLKEAFD--GSVNARIVTDRDTGASKG 541 Query: 235 FAYVEFVEAEAIQEAVK-LSESELHGRQIKVAPKRTNVPGLKQPRGGRG 92 F +V+F AE + A + + + E+ G ++ + + P RGGRG Sbjct: 542 FGFVDFSTAEDAKAAKEAMEDGEIDGNKVTLDFAK---PKGDSQRGGRG 587
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 48.9 bits (115), Expect = 7e-06 Identities = 21/78 (26%), Positives = 45/78 (57%), Gaps = 1/78 (1%) Frame = -2 Query: 376 EEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQ-PKGFAYVEFVEAEAI 200 E S +FVG + + C E++++FN G V V ++ Q P+GF ++ F + +++ Sbjct: 109 ENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSV 168 Query: 199 QEAVKLSESELHGRQIKV 146 +AV + ++ G++++V Sbjct: 169 DQAVNMHFHDIMGKKVEV 186
>GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein GBP2| (G-strand-binding protein 2) (RAP1 localization factor 6) Length = 427 Score = 48.1 bits (113), Expect = 1e-05 Identities = 23/73 (31%), Positives = 41/73 (56%) Frame = -2 Query: 385 EAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAE 206 +A + S+FV N+ + CTPE++++ F + G V I+ K G +G VEF + E Sbjct: 114 DATKRNFENSIFVRNLTFDCTPEDLKELFGTVGEVVEADIITSK-GHHRGMGTVEFTKNE 172 Query: 205 AIQEAVKLSESEL 167 ++Q+A+ + L Sbjct: 173 SVQDAISKFDGAL 185 Score = 35.8 bits (81), Expect = 0.058 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%) Frame = -2 Query: 379 KEEMDSR-SVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEF-VEAE 206 +EE+D+ VF+ N+ Y+ + ++ F CG V R + G +GF V + E E Sbjct: 212 REEIDNGFEVFIINLPYSMNWQSLKDMFKECGHVLRADVELDFNGFSRGFGSVIYPTEDE 271 Query: 205 AIQEAVKLSESELHGRQIKVAPKRTN 128 I+ + E+ GR ++V R N Sbjct: 272 MIRAIDTFNGMEVEGRVLEVREGRFN 297
>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1| Length = 833 Score = 47.8 bits (112), Expect = 1e-05 Identities = 26/102 (25%), Positives = 55/102 (53%), Gaps = 4/102 (3%) Frame = -2 Query: 427 AKEMQGGDPNAXXSEAKEEM--DSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTI-LXX 257 A +Q + N E ++ +++ +F+ N+ Y+C ++++ F G + +V + + Sbjct: 299 ASMLQKAENNVSEQERNIQLISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDK 358 Query: 256 KFGQPKGFAYVEFVEA-EAIQEAVKLSESELHGRQIKVAPKR 134 K PKGFAY++F +A +A++ ++L GR + V P + Sbjct: 359 KTNNPKGFAYIDFHDADDAVRAYLELDAKPFQGRLLHVLPAK 400 Score = 31.2 bits (69), Expect = 1.4 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Frame = -2 Query: 355 VFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVK-LS 179 + + N+ + T ++VQ + G + V + +GFA+ EFV A A++ L Sbjct: 723 ILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAMRALK 782 Query: 178 ESELHGRQI 152 + L GR + Sbjct: 783 NTHLLGRHL 791
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 47.8 bits (112), Expect = 1e-05 Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 1/102 (0%) Frame = -2 Query: 436 AKVAKEMQGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXX 257 A A G N + + + D R +FVG + + T +E++ HF G + + + Sbjct: 32 AGAAGSTNGSSDNQSAASGQRD-DDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTD 90 Query: 256 -KFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAPKR 134 + G+ +GFA++ F EAI + E ++ + KV PK+ Sbjct: 91 PQTGRSRGFAFIVFTNTEAIDKVSAADEHIINSK--KVDPKK 130 Score = 40.0 bits (92), Expect = 0.003 Identities = 23/93 (24%), Positives = 47/93 (50%), Gaps = 7/93 (7%) Frame = -2 Query: 355 VFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXK-FGQPKGFAYVEFVEAEAIQEAVKLS 179 +FVG + + EE++ +F G + V + K Q KGF ++ F + + + +K Sbjct: 138 IFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTP 197 Query: 178 ESELHGRQIKV-----APKRTNVPGLK-QPRGG 98 + ++ G+++ V P+ + G++ PRGG Sbjct: 198 KQKIAGKEVDVKRATPKPENQMMGGMRGGPRGG 230
>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein| 11) Length = 281 Score = 47.8 bits (112), Expect = 1e-05 Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 1/80 (1%) Frame = -2 Query: 382 AKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEA 203 A+EE D R+VFVGN+ E + + F G + +VTI + G+PK F +V F E+ Sbjct: 4 AQEEAD-RTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPES 62 Query: 202 IQEAVKLSES-ELHGRQIKV 146 + A+ L L+GR I V Sbjct: 63 VSYAIALLNGIRLYGRPINV 82
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 47.4 bits (111), Expect = 2e-05 Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 2/74 (2%) Frame = -2 Query: 361 RSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXK-FGQPKGFAYVEFVEAEAIQEAVK 185 RSVFVGN+ Y T E+++ F+ G V ++ + G+PKG+ + E+ + E A++ Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75 Query: 184 -LSESELHGRQIKV 146 L+ E GR ++V Sbjct: 76 NLNGREFSGRALRV 89
>RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 427 Score = 47.4 bits (111), Expect = 2e-05 Identities = 29/117 (24%), Positives = 64/117 (54%), Gaps = 3/117 (2%) Frame = -2 Query: 433 KVAKEMQGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXK 254 K A++++ DPN + + +++FV + Y + ++++ F S G + RV ++ + Sbjct: 116 KAAEDLKKYDPNNDPNATGDPY--KTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQ 173 Query: 253 F-GQPKGFAYVEFVEAEAIQEAVKLSESE-LHGRQIKVAPKR-TNVPGLKQPRGGRG 92 +PKG+A++E++ ++ A K ++ + + GR++ V +R VP + R G G Sbjct: 174 LTNKPKGYAFIEYMHTRDMKAAYKQADGQKIDGRRVLVDVERGRTVPNWRPRRLGGG 230
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 47.4 bits (111), Expect = 2e-05 Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 2/74 (2%) Frame = -2 Query: 361 RSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXK-FGQPKGFAYVEFVEAEAIQEAVK 185 RSVFVGN+ Y T E+++ F+ G V ++ + G+PKG+ + E+ + E A++ Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75 Query: 184 -LSESELHGRQIKV 146 L+ E GR ++V Sbjct: 76 NLNGREFSGRALRV 89
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 47.0 bits (110), Expect = 3e-05 Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 4/112 (3%) Frame = -2 Query: 469 EEEXXALREMQAKVAKEM--QGGDPNAXXS--EAKEEMDSRSVFVGNVXYACTPEEVQQH 302 EEE ++E K KEM Q P A E E + ++FVGN+ + + E++ Sbjct: 268 EEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTG 327 Query: 301 FNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 146 + + ++ + G + F YV+F AE +++A++L+ ++ G +IK+ Sbjct: 328 ISDVFAKNDLAVVDVRIGMTRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 379 Score = 39.3 bits (90), Expect = 0.005 Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Frame = -2 Query: 367 DSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAV 188 +S+++ + N+ Y+ T E +Q+ F + + + G+ KG+A++EF E +EA+ Sbjct: 485 ESKTLVLSNLSYSATEETLQEVFEKATFIK---VPQNQNGKSKGYAFIEFASFEDAKEAL 541 Query: 187 -KLSESELHGRQIKVAPKRTNVPGLKQPRG 101 ++ E+ GR I++ L+ PRG Sbjct: 542 NSCNKREIEGRAIRLE--------LQGPRG 563 Score = 37.7 bits (86), Expect = 0.015 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 7/126 (5%) Frame = -2 Query: 448 REMQAKVAK-EMQG--GDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVX 278 RE++ + + E+QG G PNA S+++FV + T E +++ F+ G V Sbjct: 547 REIEGRAIRLELQGPRGSPNA------RSQPSKTLFVKGLSEDTTEETLKESFD--GSVR 598 Query: 277 RVTILXXKFGQPKGFAYVEF---VEAEAIQEAVKLSESELHGRQIKVA-PKRTNVPGLKQ 110 + + G KGF +V+F +A+A +EA + + E+ G ++ + K G Sbjct: 599 ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEA--MEDGEIDGNKVTLDWAKPKGEGGFGG 656 Query: 109 PRGGRG 92 GGRG Sbjct: 657 RGGGRG 662
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 47.0 bits (110), Expect = 3e-05 Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 4/112 (3%) Frame = -2 Query: 469 EEEXXALREMQAKVAKEM--QGGDPNAXXS--EAKEEMDSRSVFVGNVXYACTPEEVQQH 302 EEE ++E K KEM Q P A E E + ++FVGN+ + + E++ Sbjct: 267 EEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTG 326 Query: 301 FNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 146 + + ++ + G + F YV+F AE +++A++L+ ++ G +IK+ Sbjct: 327 ISDVFAKNDLAVVDVRIGMTRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 378 Score = 39.3 bits (90), Expect = 0.005 Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Frame = -2 Query: 367 DSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAV 188 +S+++ + N+ Y+ T E +Q+ F + + + G+ KG+A++EF E +EA+ Sbjct: 484 ESKTLVLSNLSYSATEETLQEVFEKATFIK---VPQNQNGKSKGYAFIEFASFEDAKEAL 540 Query: 187 -KLSESELHGRQIKVAPKRTNVPGLKQPRG 101 ++ E+ GR I++ L+ PRG Sbjct: 541 NSCNKREIEGRAIRLE--------LQGPRG 562 Score = 37.7 bits (86), Expect = 0.015 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 7/126 (5%) Frame = -2 Query: 448 REMQAKVAK-EMQG--GDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVX 278 RE++ + + E+QG G PNA S+++FV + T E +++ F+ G V Sbjct: 546 REIEGRAIRLELQGPRGSPNA------RSQPSKTLFVKGLSEDTTEETLKESFD--GSVR 597 Query: 277 RVTILXXKFGQPKGFAYVEF---VEAEAIQEAVKLSESELHGRQIKVA-PKRTNVPGLKQ 110 + + G KGF +V+F +A+A +EA + + E+ G ++ + K G Sbjct: 598 ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEA--MEDGEIDGNKVTLDWAKPKGEGGFGG 655 Query: 109 PRGGRG 92 GGRG Sbjct: 656 RGGGRG 661
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 47.0 bits (110), Expect = 3e-05 Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 4/112 (3%) Frame = -2 Query: 469 EEEXXALREMQAKVAKEM--QGGDPNAXXS--EAKEEMDSRSVFVGNVXYACTPEEVQQH 302 EEE ++E K KEM Q P A E E + ++FVGN+ + + E++ Sbjct: 266 EEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTG 325 Query: 301 FNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 146 + + ++ + G + F YV+F AE +++A++L+ ++ G +IK+ Sbjct: 326 ISDVFAKNDLAVVDVRIGMTRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 377 Score = 39.3 bits (90), Expect = 0.005 Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Frame = -2 Query: 367 DSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAV 188 +S+++ + N+ Y+ T E +Q+ F + + + G+ KG+A++EF E +EA+ Sbjct: 483 ESKTLVLSNLSYSATEETLQEVFEKATFIK---VPQNQNGKSKGYAFIEFASFEDAKEAL 539 Query: 187 -KLSESELHGRQIKVAPKRTNVPGLKQPRG 101 ++ E+ GR I++ L+ PRG Sbjct: 540 NSCNKREIEGRAIRLE--------LQGPRG 561 Score = 37.7 bits (86), Expect = 0.015 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 7/126 (5%) Frame = -2 Query: 448 REMQAKVAK-EMQG--GDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVX 278 RE++ + + E+QG G PNA S+++FV + T E +++ F+ G V Sbjct: 545 REIEGRAIRLELQGPRGSPNA------RSQPSKTLFVKGLSEDTTEETLKESFD--GSVR 596 Query: 277 RVTILXXKFGQPKGFAYVEF---VEAEAIQEAVKLSESELHGRQIKVA-PKRTNVPGLKQ 110 + + G KGF +V+F +A+A +EA + + E+ G ++ + K G Sbjct: 597 ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEA--MEDGEIDGNKVTLDWAKPKGEGGFGG 654 Query: 109 PRGGRG 92 GGRG Sbjct: 655 RGGGRG 660
>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)| Length = 429 Score = 47.0 bits (110), Expect = 3e-05 Identities = 21/60 (35%), Positives = 35/60 (58%) Frame = -2 Query: 364 SRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVK 185 S S+FVGN+ Y TPE++ + F+ G V R I+ + G +G VEF ++ + A++ Sbjct: 135 SNSIFVGNLTYDSTPEDLTEFFSQIGKVVRADIITSR-GHHRGMGTVEFTNSDDVDRAIR 193
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 46.6 bits (109), Expect = 3e-05 Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 2/74 (2%) Frame = -2 Query: 361 RSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXK-FGQPKGFAYVEFVEAEAIQEAVK 185 RSVFVGN+ Y T E+++ F+ G V ++ + G+PKG+ + E+ + E A++ Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75 Query: 184 -LSESELHGRQIKV 146 L+ E GR ++V Sbjct: 76 NLNGREFSGRALRV 89
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 46.6 bits (109), Expect = 3e-05 Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 2/74 (2%) Frame = -2 Query: 361 RSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXK-FGQPKGFAYVEFVEAEAIQEAVK 185 RSVFVGN+ Y T E+++ F+ G V ++ + G+PKG+ + E+ + E A++ Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75 Query: 184 -LSESELHGRQIKV 146 L+ E GR ++V Sbjct: 76 NLNGREFSGRALRV 89
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 46.6 bits (109), Expect = 3e-05 Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 2/74 (2%) Frame = -2 Query: 361 RSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXK-FGQPKGFAYVEFVEAEAIQEAVK 185 RSVFVGN+ Y T E+++ F+ G V ++ + G+PKG+ + E+ + E A++ Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75 Query: 184 -LSESELHGRQIKV 146 L+ E GR ++V Sbjct: 76 NLNGREFSGRALRV 89
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 46.6 bits (109), Expect = 3e-05 Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 2/74 (2%) Frame = -2 Query: 361 RSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXK-FGQPKGFAYVEFVEAEAIQEAVK 185 RSVFVGN+ Y T E+++ F+ G V ++ + G+PKG+ + E+ + E A++ Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75 Query: 184 -LSESELHGRQIKV 146 L+ E GR ++V Sbjct: 76 NLNGREFSGRALRV 89
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 46.2 bits (108), Expect = 4e-05 Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 1/77 (1%) Frame = -2 Query: 373 EMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQE 194 E +S+++ V N+ YA + E +Q+ F + + G+PKG+A+VEF AE +E Sbjct: 457 ERESKTLIVNNLSYAASEETLQELFKKA---TSIKMPQNNQGRPKGYAFVEFPTAEDAKE 513 Query: 193 AV-KLSESELHGRQIKV 146 A+ + +E+ GR I++ Sbjct: 514 ALNSCNNTEIEGRAIRL 530 Score = 43.1 bits (100), Expect = 4e-04 Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 3/127 (2%) Frame = -2 Query: 466 EEXXALREMQAKVAKEMQGGD-PNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSC 290 E+ ++E K KEM P A + + + S+FV N+ EE++ Sbjct: 245 EDEKPVKEAPGKRKKEMANKSAPEAKKKKTETPASAFSLFVKNLTPTKDYEELRTAIKEF 304 Query: 289 GXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV--APKRTNVPGL 116 + + + G K F YV+F+ AE + +A++L+ +L G +IK+ A + ++ Sbjct: 305 FGKKNLQVSEVRIGSSKRFGYVDFLSAEDMDKALQLNGKKLMGLEIKLEKAKSKESLKEN 364 Query: 115 KQPRGGR 95 K+ R R Sbjct: 365 KKERDAR 371 Score = 29.6 bits (65), Expect = 4.1 Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 3/74 (4%) Frame = -2 Query: 364 SRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEF---VEAEAIQE 194 S+++FV + T E +++ F G + + G KGF +V+F +A+A +E Sbjct: 552 SKTLFVRGLSEDTTEETLRESFE--GSISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKE 609 Query: 193 AVKLSESELHGRQI 152 A + + E+ G ++ Sbjct: 610 A--MEDGEIDGNKV 621
>RBM7_HUMAN (Q9Y580) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 266 Score = 46.2 bits (108), Expect = 4e-05 Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%) Frame = -2 Query: 361 RSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVKL 182 R++FVGN+ T E + + F+ G V +V I K G+PK FA+V F ++ A+ L Sbjct: 10 RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNL 69 Query: 181 SES-ELHGRQIKV 146 +L+GR IK+ Sbjct: 70 LNGIKLYGRPIKI 82
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 46.2 bits (108), Expect = 4e-05 Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 7/103 (6%) Frame = -2 Query: 385 EAKEEMDSRSV-----FVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKF-GQPKGFAYV 224 E +E ++S SV +VGN+ ++ T ++ + F G V V I+ + + +GFA+V Sbjct: 101 EKEERVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFV 160 Query: 223 EFVEAEAIQEAVKLSE-SELHGRQIKVAPKRTNVPGLKQPRGG 98 E +EA++L + S++ GR +KV N P + PRGG Sbjct: 161 TMGSVEEAKEAIRLFDGSQVGGRTVKV-----NFP--EVPRGG 196 Score = 41.6 bits (96), Expect = 0.001 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%) Frame = -2 Query: 355 VFVGNVXYACTPEEVQQHF-NSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAV-KL 182 ++V N+ +A T + ++ F + G + I G+ +GF ++ F AEA+ A+ + Sbjct: 219 LYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTM 278 Query: 181 SESELHGRQIKVAPKRTNVPGLKQP 107 +E EL GR P R NV G K P Sbjct: 279 NEVELEGR-----PLRLNVAGQKAP 298
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 46.2 bits (108), Expect = 4e-05 Identities = 30/100 (30%), Positives = 55/100 (55%), Gaps = 2/100 (2%) Frame = -2 Query: 439 QAKVAKEMQGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTI-L 263 QA A+E+Q P+ + AK + R +F+ N+ Y+ T ++ ++ F+ G + V + + Sbjct: 300 QATPAEELQEEIPDEEQAIAKIQKTGR-LFLRNILYSSTEDDFKKLFSPYGELKEVHVAV 358 Query: 262 XXKFGQPKGFAYVEFVE-AEAIQEAVKLSESELHGRQIKV 146 + G KGFAYV F + EA+Q ++L + GR + + Sbjct: 359 DTRTGNSKGFAYVLFAKPEEAVQAYIELDKQIFQGRLLHI 398 Score = 38.9 bits (89), Expect = 0.007 Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 1/99 (1%) Frame = -2 Query: 433 KVAKEMQGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXK 254 K+ ++ NA E K+ + + + V N+ + T ++V + FNS G + V + Sbjct: 715 KIQLKLSHRQGNAGSQEKKKAKNGK-IIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKF 773 Query: 253 FGQPKGFAYVEFVEAEAIQEAV-KLSESELHGRQIKVAP 140 +GFA+VEFV + + A+ +L L GR++ + P Sbjct: 774 DKSARGFAFVEFVLPKEAENAMDQLQGVHLLGRRLVMQP 812
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 45.8 bits (107), Expect = 6e-05 Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 1/92 (1%) Frame = -2 Query: 364 SRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTI-LXXKFGQPKGFAYVEFVEAEAIQEAV 188 S +VFVGN+ + T +++ F CG + + + + G+ KGF YV F + ++ ++ V Sbjct: 365 SDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCV 424 Query: 187 KLSESELHGRQIKVAPKRTNVPGLKQPRGGRG 92 +++ + GR ++ G RGGRG Sbjct: 425 EMNGHFIAGRPCRLDFSTPRTGG--GSRGGRG 454 Score = 39.3 bits (90), Expect = 0.005 Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 5/107 (4%) Frame = -2 Query: 403 PNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRV-TILXXKFGQPKGFAY 227 P +++ ++ +VFVG + + + + Q F G + I+ + G+ KG+ Y Sbjct: 249 PAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGY 308 Query: 226 VEFVEAEAIQEAVKLS-ESELHGRQIKV---APKRTNVPGLKQPRGG 98 V+F EA + AV + E+ GR + + P+ N Q R G Sbjct: 309 VDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAG 355
>RBM14_PONPY (Q5RC41) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 45.4 bits (106), Expect = 7e-05 Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 1/110 (0%) Frame = -2 Query: 472 MEEEXXALREMQAKVAKEMQGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNS 293 M E ALR ++A E++ G +++ +FVGNV ACT +E++ F Sbjct: 42 MRENAGALRAIEALHGHELRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFER 101 Query: 292 CGXVXRVTILXXKFGQPKGFAYVEF-VEAEAIQEAVKLSESELHGRQIKV 146 G V ++ K +A+V EA+A +L+ E+ G++I V Sbjct: 102 RGRVIECDVV-------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
>RBM14_HUMAN (Q96PK6) RNA-binding protein 14 (RNA-binding motif protein 14)| (RRM-containing coactivator activator/modulator) (Synaptotagmin-interacting protein) (SYT-interacting protein) Length = 669 Score = 45.4 bits (106), Expect = 7e-05 Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 1/110 (0%) Frame = -2 Query: 472 MEEEXXALREMQAKVAKEMQGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNS 293 M E ALR ++A E++ G +++ +FVGNV ACT +E++ F Sbjct: 42 MRENAGALRAIEALHGHELRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFER 101 Query: 292 CGXVXRVTILXXKFGQPKGFAYVEF-VEAEAIQEAVKLSESELHGRQIKV 146 G V ++ K +A+V EA+A +L+ E+ G++I V Sbjct: 102 RGRVIECDVV-------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 45.1 bits (105), Expect = 1e-04 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 2/72 (2%) Frame = -2 Query: 355 VFVGNVXYACTPEEVQQHFNSCGXVXRV-TILXXKFGQPKGFAYVEFVEAEAIQEAV-KL 182 VFVGN+ Y + +++ + FN G V +L + G KG+ + EF ++E AV KL Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68 Query: 181 SESELHGRQIKV 146 + SEL R+I+V Sbjct: 69 NNSELGPRKIRV 80
>RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 262 Score = 45.1 bits (105), Expect = 1e-04 Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 1/73 (1%) Frame = -2 Query: 361 RSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVKL 182 R++FVGN+ T E + + F+ G V +V I K G+PK FA+V F ++ A+ L Sbjct: 10 RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNL 69 Query: 181 SES-ELHGRQIKV 146 +L GR IK+ Sbjct: 70 LNGIKLFGRPIKI 82
>NCBP2_ASHGO (Q754W7) Nuclear cap-binding protein subunit 2| Length = 218 Score = 44.3 bits (103), Expect = 2e-04 Identities = 28/103 (27%), Positives = 57/103 (55%), Gaps = 3/103 (2%) Frame = -2 Query: 385 EAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFG-QPKGFAYVEFVEA 209 E ++ M S +++VGN+ + + E++ + F+ CG + ++ + +F P GF ++ + Sbjct: 38 ELRKSMTSATIYVGNLSFYTSEEQLYELFSKCGSIEKIIMGLDRFKFTPCGFCFIIYQTP 97 Query: 208 EAIQEAVK-LSESELHGRQIKVAPKRTNVPGLKQPRG-GRGFN 86 + A+K LS+++L R+I + PG ++ R GRG N Sbjct: 98 QEALAALKYLSKTKLDDREITIDLD----PGFEEGRQFGRGKN 136
>RBM14_MOUSE (Q8C2Q3) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 44.3 bits (103), Expect = 2e-04 Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 1/110 (0%) Frame = -2 Query: 472 MEEEXXALREMQAKVAKEMQGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNS 293 M E A+R ++A E++ G +++ +FVGNV ACT +E++ F Sbjct: 42 MRENAGAVRAIEALHGHELRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFER 101 Query: 292 CGXVXRVTILXXKFGQPKGFAYVEF-VEAEAIQEAVKLSESELHGRQIKV 146 G V ++ K +A+V EA+A +L+ E+ G++I V Sbjct: 102 RGRVIECDVV-------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
>RBM14_BOVIN (Q5EA36) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 44.3 bits (103), Expect = 2e-04 Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 1/110 (0%) Frame = -2 Query: 472 MEEEXXALREMQAKVAKEMQGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNS 293 M E A+R ++A E++ G +++ +FVGNV ACT +E++ F Sbjct: 42 MRENAGAVRAIEALHGHELRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFER 101 Query: 292 CGXVXRVTILXXKFGQPKGFAYVEF-VEAEAIQEAVKLSESELHGRQIKV 146 G V ++ K +A+V EA+A +L+ E+ G++I V Sbjct: 102 RGRVIECDVV-------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
>DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 295 Score = 44.3 bits (103), Expect = 2e-04 Identities = 22/73 (30%), Positives = 38/73 (52%) Frame = -2 Query: 358 SVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVKLS 179 +VFVG + E++ F G V V I+ + G KG+ +V F +Q+ V+ S Sbjct: 41 TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFFNDVDVQKIVE-S 99 Query: 178 ESELHGRQIKVAP 140 + HG+++K+ P Sbjct: 100 QINFHGKKLKLGP 112
>DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) (DAZ homolog) (SPGY-like-autosomal) Length = 295 Score = 44.3 bits (103), Expect = 2e-04 Identities = 22/73 (30%), Positives = 38/73 (52%) Frame = -2 Query: 358 SVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVKLS 179 +VFVG + E++ F G V V I+ + G KG+ +V F +Q+ V+ S Sbjct: 41 TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFFNDVDVQKIVE-S 99 Query: 178 ESELHGRQIKVAP 140 + HG+++K+ P Sbjct: 100 QINFHGKKLKLGP 112
>DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 298 Score = 44.3 bits (103), Expect = 2e-04 Identities = 22/73 (30%), Positives = 38/73 (52%) Frame = -2 Query: 358 SVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVKLS 179 +VFVG + E++ F G V V I+ + G KG+ +V F +Q+ V+ S Sbjct: 41 TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-S 99 Query: 178 ESELHGRQIKVAP 140 + HG+++K+ P Sbjct: 100 QINFHGKKLKLGP 112
>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic| region Length = 403 Score = 43.9 bits (102), Expect = 2e-04 Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 2/103 (1%) Frame = -2 Query: 448 REMQAKVAKEMQGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVT 269 R M K ++ G + SR +FVGN+ + T + +++HF CG + ++ Sbjct: 210 RNMLIKDSENYSGRPDKDDLVAMSKNPPSRILFVGNLSFDVTDDLLRKHFQHCGDIVKIR 269 Query: 268 ILXXK-FGQPKGFAYVEFVEAEAIQEAVK-LSESELHGRQIKV 146 + + G+ KGFA+++F E +K S ++ GR +++ Sbjct: 270 MATFEDSGKCKGFAFIDFKNEEGSTNELKDKSCRKIAGRPLRM 312 Score = 32.3 bits (72), Expect = 0.64 Identities = 22/107 (20%), Positives = 46/107 (42%), Gaps = 18/107 (16%) Frame = -2 Query: 412 GGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCG------------------ 287 G + + K++ + V++GN+ + T +++ + F + Sbjct: 108 GDESGEVVKKKKKDENKYGVWIGNLSFDTTKDDLVRFFIAKTKDNEDEKSRVTEQDITRL 167 Query: 286 XVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 146 + RV + KGF Y+ F E ++ ++LSES L+GR + + Sbjct: 168 SMPRVAAKNSNAMKNKGFCYMFFKNVEQMKAVLELSESHLNGRNMLI 214
>RNP24_SCHPO (Q09100) RNA-binding protein rnp24| Length = 369 Score = 43.9 bits (102), Expect = 2e-04 Identities = 19/72 (26%), Positives = 43/72 (59%), Gaps = 1/72 (1%) Frame = -2 Query: 385 EAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXK-FGQPKGFAYVEFVEA 209 ++ ++ S +FVGN+ + T ++++HF G + RV ++ + G+ KGF +V+F + Sbjct: 220 QSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDI 279 Query: 208 EAIQEAVKLSES 173 + +A++L + Sbjct: 280 DTCMKAMELGHN 291 Score = 37.0 bits (84), Expect = 0.026 Identities = 30/128 (23%), Positives = 57/128 (44%), Gaps = 20/128 (15%) Frame = -2 Query: 469 EEEXXALREMQAKVAKEMQGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFN-- 296 ++E L+ + AK ++ +G S+ + + ++VGN+ + T E + F Sbjct: 75 KKEEKRLKRLDAKYGRKEEG------ESQEESKRSPWGIWVGNLSFHTTKEILTDFFVRE 128 Query: 295 ----------------SCGXVXRVTILXXKFG--QPKGFAYVEFVEAEAIQEAVKLSESE 170 + + R+ + K Q KGFAYV+F +A++ A++ SE Sbjct: 129 TSEMIKEVSEENIKPITTEQITRIHMPMSKEKRFQNKGFAYVDFATEDALKLALQCSEKA 188 Query: 169 LHGRQIKV 146 L+GR I + Sbjct: 189 LNGRNILI 196
>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 437 Score = 43.5 bits (101), Expect = 3e-04 Identities = 31/124 (25%), Positives = 66/124 (53%), Gaps = 4/124 (3%) Frame = -2 Query: 451 LREMQAKVAKEMQGGDPNAXXSEAKEEMDS-RSVFVGNVXYACTPEEVQQHFNSCGXVXR 275 + Q +V E++ DP+ ++ + D+ +++FV V Y T ++++ F G + R Sbjct: 75 IERRQQEVETELKMWDPH---NDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKR 131 Query: 274 VTILXXK-FGQPKGFAYVEFVEAEAIQEAVKLSE-SELHGRQIKVAPKR-TNVPGLKQPR 104 + ++ K G+P+G+A++E+ + A K ++ ++ GR++ V +R V G + R Sbjct: 132 IHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRR 191 Query: 103 GGRG 92 G G Sbjct: 192 LGGG 195
>NOP12_YARLI (Q6C2Q7) Nucleolar protein 12| Length = 509 Score = 43.5 bits (101), Expect = 3e-04 Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 9/82 (10%) Frame = -2 Query: 361 RSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXX-KFGQPKGFAYVEFVEAEAIQEAV- 188 R VFVG + + E + + F+SCG V V I+ K KGFAYV+F + ++++A+ Sbjct: 274 RCVFVGALDFEEQEESLWEAFSSCGDVEYVRIVRDPKTNVGKGFAYVQFKDVNSVEQALL 333 Query: 187 -------KLSESELHGRQIKVA 143 +LS+S + R+++V+ Sbjct: 334 LNGKGINELSKSTTNKRKLRVS 355
>DAZ2_HUMAN (Q13117) Deleted in azoospermia protein 2| Length = 558 Score = 43.5 bits (101), Expect = 3e-04 Identities = 23/73 (31%), Positives = 37/73 (50%) Frame = -2 Query: 358 SVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVKLS 179 +VFVG + E+ F G V V I+ + G KG+ +V FV +Q+ V S Sbjct: 41 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVG-S 99 Query: 178 ESELHGRQIKVAP 140 + HG+++K+ P Sbjct: 100 QIHFHGKKLKLGP 112
>DAZ4_HUMAN (Q86SG3) Deleted in azoospermia protein 4| Length = 579 Score = 43.5 bits (101), Expect = 3e-04 Identities = 23/73 (31%), Positives = 37/73 (50%) Frame = -2 Query: 358 SVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVKLS 179 +VFVG + E+ F G V V I+ + G KG+ +V FV +Q+ V S Sbjct: 206 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVG-S 264 Query: 178 ESELHGRQIKVAP 140 + HG+++K+ P Sbjct: 265 QIHFHGKKLKLGP 277 Score = 43.5 bits (101), Expect = 3e-04 Identities = 23/73 (31%), Positives = 37/73 (50%) Frame = -2 Query: 358 SVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVKLS 179 +VFVG + E+ F G V V I+ + G KG+ +V FV +Q+ V S Sbjct: 41 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVG-S 99 Query: 178 ESELHGRQIKVAP 140 + HG+++K+ P Sbjct: 100 QIHFHGKKLKLGP 112
>DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 296 Score = 43.5 bits (101), Expect = 3e-04 Identities = 22/73 (30%), Positives = 38/73 (52%) Frame = -2 Query: 358 SVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVKLS 179 +VFVG + E++ F G V V I+ + G KG+ +V F +Q+ V+ S Sbjct: 41 TVFVGGIDVRMDETEIRGFFARYGSVKEVKIITDRTGVSKGYGFVSFFNDVDVQKIVE-S 99 Query: 178 ESELHGRQIKVAP 140 + HG+++K+ P Sbjct: 100 QINFHGKKLKLGP 112
>NCBP2_YEAST (Q08920) Nuclear cap-binding protein subunit 2| Length = 208 Score = 43.5 bits (101), Expect = 3e-04 Identities = 24/89 (26%), Positives = 49/89 (55%), Gaps = 2/89 (2%) Frame = -2 Query: 406 DPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFG-QPKGFA 230 +PN E +E M S +++VGN+ + + E++ + F+ CG + R+ + +F P GF Sbjct: 32 NPNGL-QELRESMKSSTIYVGNLSFYTSEEQIYELFSKCGTIKRIIMGLDRFKFTPCGFC 90 Query: 229 YVEF-VEAEAIQEAVKLSESELHGRQIKV 146 ++ + EA+ LS+++L + I + Sbjct: 91 FIIYSCPDEALNALKYLSDTKLDEKTITI 119
>DAZ3_HUMAN (Q9NR90) Deleted in azoospermia protein 3| Length = 486 Score = 43.5 bits (101), Expect = 3e-04 Identities = 23/73 (31%), Positives = 37/73 (50%) Frame = -2 Query: 358 SVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVKLS 179 +VFVG + E+ F G V V I+ + G KG+ +V FV +Q+ V S Sbjct: 41 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVG-S 99 Query: 178 ESELHGRQIKVAP 140 + HG+++K+ P Sbjct: 100 QIHFHGKKLKLGP 112
>DAZ1_HUMAN (Q9NQZ3) Deleted in azoospermia protein 1| Length = 744 Score = 43.5 bits (101), Expect = 3e-04 Identities = 23/73 (31%), Positives = 37/73 (50%) Frame = -2 Query: 358 SVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVKLS 179 +VFVG + E+ F G V V I+ + G KG+ +V FV +Q+ V S Sbjct: 371 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVG-S 429 Query: 178 ESELHGRQIKVAP 140 + HG+++K+ P Sbjct: 430 QIHFHGKKLKLGP 442 Score = 43.5 bits (101), Expect = 3e-04 Identities = 23/73 (31%), Positives = 37/73 (50%) Frame = -2 Query: 358 SVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVKLS 179 +VFVG + E+ F G V V I+ + G KG+ +V FV +Q+ V S Sbjct: 206 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVG-S 264 Query: 178 ESELHGRQIKVAP 140 + HG+++K+ P Sbjct: 265 QIHFHGKKLKLGP 277 Score = 43.5 bits (101), Expect = 3e-04 Identities = 23/73 (31%), Positives = 37/73 (50%) Frame = -2 Query: 358 SVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVKLS 179 +VFVG + E+ F G V V I+ + G KG+ +V FV +Q+ V S Sbjct: 41 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVG-S 99 Query: 178 ESELHGRQIKVAP 140 + HG+++K+ P Sbjct: 100 QIHFHGKKLKLGP 112
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core| protein A1-A) (PEN repeat clone P9) Length = 365 Score = 43.5 bits (101), Expect = 3e-04 Identities = 25/94 (26%), Positives = 49/94 (52%), Gaps = 4/94 (4%) Frame = -2 Query: 361 RSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXK-FGQPKGFAYVEFVEAEAIQEAVK 185 + +FVG + + ++ +F G + + I+ K G+ +GFA+VEF + + + + V Sbjct: 122 KKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVL 181 Query: 184 LSESELHGRQI---KVAPKRTNVPGLKQPRGGRG 92 + +L+G+ + K PK+ + G RGG G Sbjct: 182 QKQHQLNGKMVDVKKALPKQNDQQGGGGGRGGPG 215 Score = 42.7 bits (99), Expect = 5e-04 Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 1/94 (1%) Frame = -2 Query: 412 GGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXX-KFGQPKG 236 G D + E R +F+G + Y T E ++ HF G + V ++ + + +G Sbjct: 14 GHDDDFPQDSITEPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRG 73 Query: 235 FAYVEFVEAEAIQEAVKLSESELHGRQIKVAPKR 134 F ++ + + I EA K ++ GR ++ PKR Sbjct: 74 FGFITYSHSSMIDEAQKSRPHKIDGRVVE--PKR 105
>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70| kDa) (snRNP70) Length = 448 Score = 43.5 bits (101), Expect = 3e-04 Identities = 31/124 (25%), Positives = 66/124 (53%), Gaps = 4/124 (3%) Frame = -2 Query: 451 LREMQAKVAKEMQGGDPNAXXSEAKEEMDS-RSVFVGNVXYACTPEEVQQHFNSCGXVXR 275 + Q +V E++ DP+ ++ + D+ +++FV V Y T ++++ F G + R Sbjct: 75 IERRQQEVETELKMWDPH---NDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKR 131 Query: 274 VTILXXK-FGQPKGFAYVEFVEAEAIQEAVKLSE-SELHGRQIKVAPKR-TNVPGLKQPR 104 + ++ K G+P+G+A++E+ + A K ++ ++ GR++ V +R V G + R Sbjct: 132 IHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRR 191 Query: 103 GGRG 92 G G Sbjct: 192 LGGG 195
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 43.1 bits (100), Expect = 4e-04 Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 2/104 (1%) Frame = -2 Query: 445 EMQAKVAKEMQGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTI 266 E Q E++ + K+ ++ +F+ N+ Y T ++ ++ F+ G + V I Sbjct: 302 EQQQPEETEVETSQESEEEKSLKKIRETGRLFLRNILYTATEDDFRKLFSPYGELEEVHI 361 Query: 265 -LXXKFGQPKGFAYVEFVEAE-AIQEAVKLSESELHGRQIKVAP 140 + + GQ KGFAYV F A+ A V+L + GR + + P Sbjct: 362 AVDTRTGQSKGFAYVLFKNADNAATAFVELDKQIFQGRLLHILP 405 Score = 34.7 bits (78), Expect = 0.13 Identities = 25/99 (25%), Positives = 50/99 (50%), Gaps = 1/99 (1%) Frame = -2 Query: 445 EMQAKVAKEMQGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTI 266 ++Q K++ NA S K++ + + V N+ + T ++V + F+S G + V + Sbjct: 726 KLQLKLSHRQGTSTTNA--SSKKKKKNQGKIIVKNLPFEATRKDVFELFSSFGQLKSVRV 783 Query: 265 LXXKFGQPKGFAYVEFVEAEAIQEAV-KLSESELHGRQI 152 +GFA+VEF+ + + A+ +L L GR++ Sbjct: 784 PKKFDKSARGFAFVEFLLPKEAENAMDQLQGVHLLGRRL 822
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 42.7 bits (99), Expect = 5e-04 Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Frame = -2 Query: 361 RSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXX-KFGQPKGFAYVEFVEAEAIQEAVK 185 R +F+G + Y T E ++QHF G + V ++ K + +GF ++ + A + +A Sbjct: 17 RKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQN 76 Query: 184 LSESELHGRQIKVAPKR 134 ++ GR ++ PKR Sbjct: 77 ARPHKVDGRVVE--PKR 91 Score = 36.6 bits (83), Expect = 0.034 Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 3/93 (3%) Frame = -2 Query: 361 RSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPK-GFAYVEFVEAEAIQEAVK 185 + +FVG + +++ +F G V I+ K + K GFA+VEF + + + + Sbjct: 108 KKLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDYDPVDKICL 167 Query: 184 LSESELHGRQI--KVAPKRTNVPGLKQPRGGRG 92 ++ G+ I K A + + PG + GGRG Sbjct: 168 SRNHQIRGKHIDVKKALPKGDAPG-GRGGGGRG 199
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 42.7 bits (99), Expect = 5e-04 Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 2/80 (2%) Frame = -2 Query: 355 VFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXK-FGQPKGFAYVEFVEAEAIQEAVK-L 182 V+VGN+ + ++ F+ G V ++ + G+ KGF +V + ++ +Q A+K L Sbjct: 206 VYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSL 265 Query: 181 SESELHGRQIKVAPKRTNVP 122 ++L GRQI+V+ P Sbjct: 266 DGADLDGRQIRVSEAEARPP 285
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 42.4 bits (98), Expect = 6e-04 Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 1/78 (1%) Frame = -2 Query: 376 EEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQ-PKGFAYVEFVEAEAI 200 EE D+R+VF + P ++++ F++ G V V ++ + + KG AYVEFV+ ++ Sbjct: 148 EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSV 207 Query: 199 QEAVKLSESELHGRQIKV 146 A+ L+ + G I V Sbjct: 208 PLAIGLTGQRVLGVPIIV 225
>SRR35_HUMAN (Q8WXF0) 35 kDa SR repressor protein (SRrp35)| Length = 261 Score = 42.4 bits (98), Expect = 6e-04 Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 2/73 (2%) Frame = -2 Query: 358 SVFVGNVXYACTPEEVQQHFNSCGXVXRVTI-LXXKFGQPKGFAYVEFVEAEAIQEAV-K 185 S+F+ NV A PE++++ F G + V I L +P+GFAYV+F + ++A+ Sbjct: 11 SLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYN 70 Query: 184 LSESELHGRQIKV 146 L+ + GRQI++ Sbjct: 71 LNRKWVCGRQIEI 83
>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 42.4 bits (98), Expect = 6e-04 Identities = 30/123 (24%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Frame = -2 Query: 451 LREMQAKVAKEMQGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRV 272 + Q V E++ DP+ + + +++FV V Y T ++++ F G + R+ Sbjct: 75 IERRQQDVENELKIWDPHNDQNAQGDAF--KTLFVARVNYDTTESKLRREFEVYGPIKRI 132 Query: 271 TILXXK-FGQPKGFAYVEFVEAEAIQEAVKLSE-SELHGRQIKVAPKR-TNVPGLKQPRG 101 ++ K G+P+G+A++E+ + A K ++ ++ GR++ V +R V G + R Sbjct: 133 HMVYNKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRL 192 Query: 100 GRG 92 G G Sbjct: 193 GGG 195
>RU17_XENLA (P09406) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 42.4 bits (98), Expect = 6e-04 Identities = 31/126 (24%), Positives = 62/126 (49%), Gaps = 6/126 (4%) Frame = -2 Query: 451 LREMQAKVAKEMQGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRV 272 + Q V E++ DP+ + + +++FV V Y T ++++ F G + R+ Sbjct: 75 IERRQQDVENELKIWDPHNDQNAQGDAF--KTLFVARVNYDTTESKLRREFEVYGPIKRI 132 Query: 271 TILXXK----FGQPKGFAYVEFVEAEAIQEAVKLSE-SELHGRQIKVAPKR-TNVPGLKQ 110 I+ K G+P+G+A++E+ + A K ++ ++ GR++ V +R V G + Sbjct: 133 HIVYNKGSEGSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRP 192 Query: 109 PRGGRG 92 R G G Sbjct: 193 RRLGGG 198
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 42.0 bits (97), Expect = 8e-04 Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 1/78 (1%) Frame = -2 Query: 376 EEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQ-PKGFAYVEFVEAEAI 200 EE D+R+VF + P ++++ F++ G V V ++ + + +G AYVEFV+ ++ Sbjct: 148 EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSRGIAYVEFVDVSSV 207 Query: 199 QEAVKLSESELHGRQIKV 146 + A+ L+ + G I V Sbjct: 208 RLAIGLTGQRVLGVPIIV 225
>RNP4F_DROME (Q9W4D2) RNA-binding protein 4F| Length = 941 Score = 42.0 bits (97), Expect = 8e-04 Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 4/78 (5%) Frame = -2 Query: 409 GDPNAXXSEAK----EEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQP 242 G NA E+ M+ +FV N+ AC+ EE+ + F+ G + V ++ Q Sbjct: 704 GPANAEAKESNFKYSPNMEINKIFVRNLHPACSKEELHELFSPFGTIKDVRLVHKLNKQF 763 Query: 241 KGFAYVEFVEAEAIQEAV 188 KG AYVEF + Q AV Sbjct: 764 KGIAYVEFEKPGEAQRAV 781
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 41.6 bits (96), Expect = 0.001 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 3/91 (3%) Frame = -2 Query: 355 VFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQ-PKGFAYVEFVEAEAIQEAVKLS 179 +FVG + + + ++ HF+S G + V ++ + Q +GF ++ F E +A++ Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67 Query: 178 ESE-LHGRQIKVAPKRTNVPGLKQPR-GGRG 92 E L GRQI+V + G + GGRG Sbjct: 68 NGESLDGRQIRVDHAGKSARGSRGGAFGGRG 98
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 41.6 bits (96), Expect = 0.001 Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 2/74 (2%) Frame = -2 Query: 355 VFVGNVXYACTPEEVQQHFNSCGXVXRVTI-LXXKFGQPKGFAYVEFVEAE-AIQEAVKL 182 +F+ N+ Y T E+ +Q F+ G + V + + + GQ KGFAYV F + E A ++L Sbjct: 303 LFLRNILYDATEEDFKQLFSPYGELEEVHVAVDTRTGQSKGFAYVLFKDPEHAANAYIEL 362 Query: 181 SESELHGRQIKVAP 140 + GR + + P Sbjct: 363 DKQIFQGRLLHILP 376 Score = 31.6 bits (70), Expect = 1.1 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 1/80 (1%) Frame = -2 Query: 388 SEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEF-VE 212 S+ ++ S + V N+ + T ++V + F+S G + V + +GFA+VEF + Sbjct: 703 SKGSKKKISGKIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLP 762 Query: 211 AEAIQEAVKLSESELHGRQI 152 +EA +L L GR++ Sbjct: 763 SEAENAMDQLQGVHLLGRRL 782
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 41.6 bits (96), Expect = 0.001 Identities = 21/81 (25%), Positives = 46/81 (56%), Gaps = 1/81 (1%) Frame = -2 Query: 367 DSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAV 188 +S+++ + N+ Y+ T E +++ F + + G+PKG+A++EF E +EA+ Sbjct: 484 ESKTLVLSNLSYSATKETLEEVFEKATFIK---VPQNPHGKPKGYAFIEFASFEDAKEAL 540 Query: 187 -KLSESELHGRQIKVAPKRTN 128 ++ E+ GR I++ + +N Sbjct: 541 NSCNKMEIEGRTIRLELQGSN 561 Score = 38.5 bits (88), Expect = 0.009 Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 4/112 (3%) Frame = -2 Query: 469 EEEXXALREMQAKVAKEM--QGGDPNAXXS--EAKEEMDSRSVFVGNVXYACTPEEVQQH 302 EEE ++ K KEM Q P A E E ++F+GN+ + E++ Sbjct: 268 EEEEEPVKAAPGKRKKEMTKQKEAPEAKKQKVEGSEPTTPFNLFIGNLNPNKSVNELKFA 327 Query: 301 FNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 146 + + ++ + G + F YV+F AE +++A++L+ ++ G +IK+ Sbjct: 328 ISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 379 Score = 32.0 bits (71), Expect = 0.83 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 4/95 (4%) Frame = -2 Query: 364 SRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEF---VEAEAIQE 194 S+++FV + T E +++ F G V + + G KGF +V+F +A+A +E Sbjct: 567 SKTLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKE 624 Query: 193 AVKLSESELHGRQIKVA-PKRTNVPGLKQPRGGRG 92 A + + E+ G ++ + K G GGRG Sbjct: 625 A--MEDGEIDGNKVTLDWAKPKGEGGFGGRGGGRG 657
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 41.6 bits (96), Expect = 0.001 Identities = 20/68 (29%), Positives = 33/68 (48%) Frame = -2 Query: 388 SEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEA 209 SE ++ R +F+G + CT +++ F+S G + IL G +G A+V F Sbjct: 99 SEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTR 158 Query: 208 EAIQEAVK 185 Q A+K Sbjct: 159 TMAQTAIK 166
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 41.6 bits (96), Expect = 0.001 Identities = 20/68 (29%), Positives = 33/68 (48%) Frame = -2 Query: 388 SEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEA 209 SE ++ R +F+G + CT +++ F+S G + IL G +G A+V F Sbjct: 99 SEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTR 158 Query: 208 EAIQEAVK 185 Q A+K Sbjct: 159 AMAQTAIK 166
>RBM7_MOUSE (Q9CQT2) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 265 Score = 41.2 bits (95), Expect = 0.001 Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Frame = -2 Query: 361 RSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVKL 182 R++FVGN+ T E + + F+ G V +V I K G+ K FA+V F ++ A+ L Sbjct: 10 RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKLKQFAFVNFKHEVSVPYAMNL 69 Query: 181 SES-ELHGRQIKV 146 +L GR IK+ Sbjct: 70 LNGIKLFGRPIKI 82
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 40.8 bits (94), Expect = 0.002 Identities = 25/99 (25%), Positives = 54/99 (54%), Gaps = 1/99 (1%) Frame = -2 Query: 445 EMQAKVAKEMQGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTI 266 ++Q K++ Q + +E K+ +DS+ + + N+ + T ++VQ+ F + G + V + Sbjct: 680 KLQLKISNRGQDEE----TTETKKAIDSK-ILIKNLPFEATKKDVQKLFGAFGSLKTVRV 734 Query: 265 LXXKFGQPKGFAYVEFVEAEAIQEAVK-LSESELHGRQI 152 + +GFA+ E+V A+ + A+ L + L GR++ Sbjct: 735 PKKFNSESRGFAFAEYVSAKEAEHAMSALQGTHLLGRRL 773 Score = 39.3 bits (90), Expect = 0.005 Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 12/121 (9%) Frame = -2 Query: 466 EEXXALREMQAKV-AKEMQGGDPNAXXSEAKEEMDSRSV---------FVGNVXYACTPE 317 EE R ++K K+ +G P A +E + ++ F+ N+ Y E Sbjct: 256 EEDRENRHTESKSEGKKGKGNAPKAATPVDEEPSEDPTIVSIRKTGRLFLRNLLYTAKEE 315 Query: 316 EVQQHFNSCGXVXRVTI-LXXKFGQPKGFAYVEFVEAEAIQEAVKLSESEL-HGRQIKVA 143 + +Q F+ G + V + + K GQ KGFA+V+F + E A + + ++ GR + + Sbjct: 316 DFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPENAIAAYEAQDGKIFQGRLLHIL 375 Query: 142 P 140 P Sbjct: 376 P 376
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 40.4 bits (93), Expect = 0.002 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 2/74 (2%) Frame = -2 Query: 355 VFVGNVXYACTPEEVQQHFNSCGXVXRVTI-LXXKFGQPKGFAYVEFVEAE-AIQEAVKL 182 +F+ N+ Y E+ ++ F+ G + V + L + GQ KGFAYV F +++ A+ V+L Sbjct: 347 LFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGFAYVLFKDSKNAVNAYVEL 406 Query: 181 SESELHGRQIKVAP 140 + GR + + P Sbjct: 407 DKQIFQGRLLHILP 420 Score = 35.0 bits (79), Expect = 0.099 Identities = 21/76 (27%), Positives = 38/76 (50%) Frame = -2 Query: 388 SEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEA 209 ++ K S + V N+ + T ++V + FNS G + V + +GFA+VEF+ Sbjct: 754 TKTKSNKKSGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFLLP 813 Query: 208 EAIQEAVKLSESELHG 161 + + A+ +LHG Sbjct: 814 KEAENAM----DQLHG 825
>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1| Length = 827 Score = 40.0 bits (92), Expect = 0.003 Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 3/109 (2%) Frame = -2 Query: 445 EMQAKVAKEMQGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTI 266 E A+ ++EM + S + +F+ N+ Y T ++V++HF G + V + Sbjct: 280 EHPAEDSREMAATSTHDPESAISLIEKTSRLFLRNLSYTVTEDDVREHFAKFGILVEVHV 339 Query: 265 LXXKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAP---KRTN 128 G KGFA + + + + A + + GR + + P KR N Sbjct: 340 PLDSKGHSKGFAMIRYEKPASALAAFQTDGTVFQGRIVHILPAAAKREN 388
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 40.0 bits (92), Expect = 0.003 Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 18/139 (12%) Frame = -2 Query: 454 ALREMQAK------VAKEMQGGDPNAXXSEAKEEMDSRS-----VFVGNVXYACTPEEVQ 308 A++EMQ K + +M P AK+ D+ S +F+GN+ + + + Sbjct: 225 AIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIF 284 Query: 307 QHFNSCGXVXRVTILXX-KFGQPKGFAYVEFVEAEAIQEAVKLSESE-LHGRQIKV---A 143 + F G V V I + QPKGF YV+F E ++A+ + E + R +++ + Sbjct: 285 ELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSS 344 Query: 142 PKRTNVPGLKQPR--GGRG 92 P+ N G R GGRG Sbjct: 345 PRPNNDGGRGGSRGFGGRG 363
>DAZ1_CAEEL (Q20870) DAZ protein 1| Length = 499 Score = 39.7 bits (91), Expect = 0.004 Identities = 21/76 (27%), Positives = 37/76 (48%) Frame = -2 Query: 373 EMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQE 194 E+ +FVG + T E+++HF V V ++ GQ KG+ ++ F + +E Sbjct: 63 ELIPNRIFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLDGQSKGYGFITFETEDQAEE 122 Query: 193 AVKLSESELHGRQIKV 146 KL+ +L R K+ Sbjct: 123 IRKLTPKQLEFRSRKL 138
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 39.7 bits (91), Expect = 0.004 Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 2/83 (2%) Frame = -2 Query: 382 AKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTI-LXXKFGQPKGFAYVEFVEAE 206 A++ ++ +F+ N+ Y + E+ + F+ G + V I + + G+ KGF YV+F++ E Sbjct: 303 AQKIEETGRLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKE 362 Query: 205 AIQEAVK-LSESELHGRQIKVAP 140 A + L + GR + + P Sbjct: 363 DATRAYRSLDKQIFQGRLLHILP 385 Score = 33.1 bits (74), Expect = 0.37 Identities = 14/47 (29%), Positives = 29/47 (61%) Frame = -2 Query: 325 TPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVK 185 T E++++ F+ G V V ++ + G+ + FA++ + A+A + AVK Sbjct: 14 TEEKLREFFSKQGDVTDVKLMKKRNGESRKFAFIGYKSADAAERAVK 60 Score = 30.0 bits (66), Expect = 3.2 Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 2/100 (2%) Frame = -2 Query: 445 EMQAKVAKEMQGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTI 266 ++Q K++ + G S K+ S + + N+ + T +++ + F + G + V + Sbjct: 692 KLQLKLSHKQGTG---TSASSIKKSGKSSKIIIKNLPFEATRKDLLELFGAFGQLKSVRV 748 Query: 265 LXXKFGQP-KGFAYVEF-VEAEAIQEAVKLSESELHGRQI 152 KF Q +GFA+VEF + EA +L L GR++ Sbjct: 749 -PKKFDQSARGFAFVEFNLMKEAETAMSQLEGVHLLGRRL 787
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 39.3 bits (90), Expect = 0.005 Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 20/130 (15%) Frame = -2 Query: 448 REMQAKVAKEMQGGDPNAXX---------SEAKEEM-DSRSVFVGNVXYACTPEEVQQHF 299 RE QA A+ G P + +E +E++ DS +FV N+ Y + E++++ F Sbjct: 365 REKQAPTAR----GPPKSTTPWQGRTLGENEEEEDLADSGRLFVRNLSYTSSEEDLEKLF 420 Query: 298 NSCGXVXRVTI-LXXKFGQPKGFAYVEFVEAE-AIQEAVKLSESELHGRQIKVAP----- 140 ++ G + + + +PKGFA+V F+ E A++ ++ GR + V P Sbjct: 421 SAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKK 480 Query: 139 ---KRTNVPG 119 + N PG Sbjct: 481 EASQEANAPG 490 Score = 35.0 bits (79), Expect = 0.099 Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 6/100 (6%) Frame = -2 Query: 385 EAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQ----PKGFAYVEF 218 E +E + ++F+ N+ ++ T E ++ F+ G + TI K GF +VE+ Sbjct: 714 EEEESIPGCTLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEY 773 Query: 217 VEAEAIQEAVK-LSESELHGRQIKV-APKRTNVPGLKQPR 104 + E Q+A+K L + G +++V +R P L R Sbjct: 774 KKPEQAQKALKQLQGHTVDGHKLEVRISERATKPALTSTR 813
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 39.3 bits (90), Expect = 0.005 Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Frame = -2 Query: 367 DSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAV 188 +S+++ + N+ Y+ T E +Q+ F + + G+ KG+A++EF E +EA+ Sbjct: 486 ESKTLVLSNLSYSATEETLQEVFEKATFIK---VPQNPHGKSKGYAFIEFASFEDAKEAL 542 Query: 187 -KLSESELHGRQIKVAPKRTNVPGLKQPRG 101 ++ E+ GR I++ L+ PRG Sbjct: 543 NSCNKMEIEGRTIRLE--------LQGPRG 564 Score = 37.0 bits (84), Expect = 0.026 Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 4/112 (3%) Frame = -2 Query: 469 EEEXXALREMQAKVAKEM--QGGDPNAXXS--EAKEEMDSRSVFVGNVXYACTPEEVQQH 302 EEE ++ K KEM Q P A E E ++F+GN+ + E++ Sbjct: 270 EEEEEPVKAAPGKRKKEMTKQKEAPEAKKQKIEGSEPTTPFNLFIGNLNPNKSVAELKVA 329 Query: 301 FNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 146 + + + + G + F YV+F AE +++A++L+ ++ G +IK+ Sbjct: 330 ISELFAKNDLAAVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 381 Score = 35.8 bits (81), Expect = 0.058 Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 6/116 (5%) Frame = -2 Query: 421 EMQG--GDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFG 248 E+QG G PNA S+++FV + T E +++ F G V + + G Sbjct: 558 ELQGPRGSPNA------RSQPSKTLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETG 609 Query: 247 QPKGFAYVEF---VEAEAIQEAVKLSESELHGRQIKVA-PKRTNVPGLKQPRGGRG 92 KGF +V+F +A+A +EA + + E+ G ++ + K G GGRG Sbjct: 610 SSKGFGFVDFNSEEDAKAAKEA--MEDGEIDGNKVTLDWAKPKGEGGFGGRGGGRG 663
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 39.3 bits (90), Expect = 0.005 Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Frame = -2 Query: 367 DSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAV 188 +S+++ + N+ Y+ T E +Q+ F + + + G+ KG+A++EF E +EA+ Sbjct: 483 ESKTLVLSNLSYSATEETLQEVFEKATFIK---VPQNQQGKSKGYAFIEFASFEDAKEAL 539 Query: 187 -KLSESELHGRQIKVAPKRTNVPGLKQPRG 101 ++ E+ GR I++ L+ PRG Sbjct: 540 NSCNKMEIEGRTIRLE--------LQGPRG 561 Score = 37.7 bits (86), Expect = 0.015 Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 4/112 (3%) Frame = -2 Query: 469 EEEXXALREMQAKVAKEM--QGGDPNAXXS--EAKEEMDSRSVFVGNVXYACTPEEVQQH 302 EEE ++ K KEM Q P A E E ++F+GN+ + E++ Sbjct: 267 EEEEEPVKPAPGKRKKEMTKQKEVPEAKKQKVEGSESTTPFNLFIGNLNPNKSVAELKVA 326 Query: 301 FNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 146 + + ++ + G + F YV+F AE +++A++L+ ++ G +IK+ Sbjct: 327 ISEPFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 378 Score = 35.8 bits (81), Expect = 0.058 Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 6/116 (5%) Frame = -2 Query: 421 EMQG--GDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFG 248 E+QG G PNA S+++FV + T E +++ F G V + + G Sbjct: 555 ELQGPRGSPNA------RSQPSKTLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETG 606 Query: 247 QPKGFAYVEF---VEAEAIQEAVKLSESELHGRQIKVA-PKRTNVPGLKQPRGGRG 92 KGF +V+F +A+A +EA + + E+ G ++ + K G GGRG Sbjct: 607 SSKGFGFVDFNSEEDAKAAKEA--MEDGEIDGNKVTLDWAKPKGEGGFGGRGGGRG 660
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 39.3 bits (90), Expect = 0.005 Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 1/74 (1%) Frame = -2 Query: 358 SVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAV-KL 182 ++F+ N+ + + + F+S G + + GQ KG+ +V++ E+ Q+A+ KL Sbjct: 125 NIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKL 184 Query: 181 SESELHGRQIKVAP 140 + L+ +Q+ V P Sbjct: 185 NGMLLNDKQVYVGP 198
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 39.3 bits (90), Expect = 0.005 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 1/89 (1%) Frame = -2 Query: 451 LREMQAKVAKEMQGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRV 272 +R + KV+ GG E + +++V N+ T +E+++ F G + + Sbjct: 168 VRNKRLKVSYARPGG----------ESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQK 217 Query: 271 TILXXKF-GQPKGFAYVEFVEAEAIQEAV 188 IL K G+P+G A+V F + E QEA+ Sbjct: 218 NILRDKLTGRPRGVAFVRFNKREEAQEAI 246 Score = 31.2 bits (69), Expect = 1.4 Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 2/102 (1%) Frame = -2 Query: 412 GGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXX-KFGQPKG 236 GGD ++A ++ ++ V + T E+ F +CG + I+ K G G Sbjct: 88 GGDGGGGDTQA---VNGTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFG 144 Query: 235 FAYVEFVEAEAIQEAVK-LSESELHGRQIKVAPKRTNVPGLK 113 +A+V+F Q A+K ++ + +++KV+ R +K Sbjct: 145 YAFVDFASEIDAQNAIKTVNGITVRNKRLKVSYARPGGESIK 186
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 39.3 bits (90), Expect = 0.005 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 1/89 (1%) Frame = -2 Query: 451 LREMQAKVAKEMQGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRV 272 +R + KV+ GG E + +++V N+ T +E+++ F G + + Sbjct: 151 VRNKRLKVSYARPGG----------ESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQK 200 Query: 271 TILXXKF-GQPKGFAYVEFVEAEAIQEAV 188 IL K G+P+G A+V F + E QEA+ Sbjct: 201 NILRDKLTGKPRGVAFVRFNKREEAQEAI 229 Score = 29.6 bits (65), Expect = 4.1 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 2/73 (2%) Frame = -2 Query: 325 TPEEVQQHFNSCGXVXRVTILXX-KFGQPKGFAYVEFVEAEAIQEAVK-LSESELHGRQI 152 T E+ F +CG + I+ K G G+A+V+F Q A+K L+ + +++ Sbjct: 97 TDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSLNGVTVRNKRL 156 Query: 151 KVAPKRTNVPGLK 113 KV+ R +K Sbjct: 157 KVSYARPGGESIK 169
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 38.9 bits (89), Expect = 0.007 Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 1/83 (1%) Frame = -2 Query: 379 KEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXX-KFGQPKGFAYVEFVEAEA 203 KE R +F+G + + T E ++ HF G + ++ + +GF +V + E Sbjct: 7 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 66 Query: 202 IQEAVKLSESELHGRQIKVAPKR 134 + A+ ++ GR ++ PKR Sbjct: 67 VDAAMNARPHKVDGRVVE--PKR 87
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 38.9 bits (89), Expect = 0.007 Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Frame = -2 Query: 364 SRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTI-LXXKFGQPKGFAYVEFVEAEAIQEAV 188 S +FV N+ Y E++ F+ G + + + +F KGFAYV++ + +A EA Sbjct: 294 SARLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAY 353 Query: 187 KLSESEL-HGRQIKVAP 140 + + ++ GR + + P Sbjct: 354 RNLDGKIFQGRLLHILP 370 Score = 30.8 bits (68), Expect = 1.9 Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 2/93 (2%) Frame = -2 Query: 424 KEMQGGDPNAXXSEAKEEMDSRS-VFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFG 248 K M + AK+ R+ + + N+ + T ++V+ F + G + V + Sbjct: 675 KGMDAAEERRKEDTAKKIAARRTKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDR 734 Query: 247 QPKGFAYVEFVEAEAIQEAV-KLSESELHGRQI 152 +GF + +FV A + A+ L + L GR++ Sbjct: 735 SARGFGFADFVSAREAENAMDALKNTHLLGRRL 767
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 38.9 bits (89), Expect = 0.007 Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 1/85 (1%) Frame = -2 Query: 385 EAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXX-KFGQPKGFAYVEFVEA 209 E E R +F+G + Y T + ++ HF G + V ++ K + +GF ++ + ++ Sbjct: 16 EITEPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQS 75 Query: 208 EAIQEAVKLSESELHGRQIKVAPKR 134 I A ++ GR ++ PKR Sbjct: 76 YMIDNAQNARPHKIDGRTVE--PKR 98 Score = 32.7 bits (73), Expect = 0.49 Identities = 19/86 (22%), Positives = 43/86 (50%), Gaps = 8/86 (9%) Frame = -2 Query: 379 KEEMDS-------RSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXK-FGQPKGFAYV 224 ++E+DS + +FVG + E ++++F G + V I+ K G+ +GFA++ Sbjct: 102 RQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFI 161 Query: 223 EFVEAEAIQEAVKLSESELHGRQIKV 146 EF + + + + + + + + V Sbjct: 162 EFDDYDPVDKIILQKTHSIKNKTLDV 187
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 38.9 bits (89), Expect = 0.007 Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 9/99 (9%) Frame = -2 Query: 361 RSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXK-FGQPKGFAYVEFVEAEAIQEA-- 191 + +FVG + ++ +HF+ G V + I+ K G+ +GF +V F +A +A Sbjct: 98 KKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAV 157 Query: 190 VKLSESELHGRQIKVAPKRTNV------PGLKQPRGGRG 92 VK + H ++K A + ++ G + RGGRG Sbjct: 158 VKFHPIQGHRVEVKKAVPKEDIYSGGGGGGSRSSRGGRG 196
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 38.9 bits (89), Expect = 0.007 Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 2/72 (2%) Frame = -2 Query: 355 VFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQ-PKGFAYVEFVEAEAIQEAVKLS 179 +FVG + + + ++ HF+S G + V ++ + Q +GF ++ F E A++ Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67 Query: 178 ESE-LHGRQIKV 146 E L GRQI+V Sbjct: 68 NGESLDGRQIRV 79
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 38.9 bits (89), Expect = 0.007 Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 1/83 (1%) Frame = -2 Query: 379 KEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXX-KFGQPKGFAYVEFVEAEA 203 KE R +F+G + + T E ++ HF G + ++ + +GF +V + E Sbjct: 7 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 66 Query: 202 IQEAVKLSESELHGRQIKVAPKR 134 + A+ ++ GR ++ PKR Sbjct: 67 VDAAMNARPHKVDGRVVE--PKR 87
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 38.9 bits (89), Expect = 0.007 Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 1/83 (1%) Frame = -2 Query: 379 KEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXX-KFGQPKGFAYVEFVEAEA 203 KE R +F+G + + T E ++ HF G + ++ + +GF +V + E Sbjct: 7 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 66 Query: 202 IQEAVKLSESELHGRQIKVAPKR 134 + A+ ++ GR ++ PKR Sbjct: 67 VDAAMNARPHKVDGRVVE--PKR 87
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 38.9 bits (89), Expect = 0.007 Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 1/83 (1%) Frame = -2 Query: 379 KEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXX-KFGQPKGFAYVEFVEAEA 203 KE R +F+G + + T E ++ HF G + ++ + +GF +V + E Sbjct: 7 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEK 66 Query: 202 IQEAVKLSESELHGRQIKVAPKR 134 + A+ ++ GR ++ PKR Sbjct: 67 VDAAMNARPHKVDGRVVE--PKR 87
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 38.9 bits (89), Expect = 0.007 Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 1/98 (1%) Frame = -2 Query: 376 EEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXK-FGQPKGFAYVEFVEAEAI 200 E+ + +FVG + P+E ++ F+ G + ++ K GQ +GF +V + A+A+ Sbjct: 238 EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAV 297 Query: 199 QEAVKLSESELHGRQIKVAPKRTNVPGLKQPRGGRGFN 86 + + R+I++ KR ++Q G N Sbjct: 298 DRVCQNKFIDFKDRKIEI--KRAEPRHMQQKSSNNGGN 333
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 38.9 bits (89), Expect = 0.007 Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 1/83 (1%) Frame = -2 Query: 379 KEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXX-KFGQPKGFAYVEFVEAEA 203 KE R +F+G + + T E ++ HF G + ++ + +GF +V + E Sbjct: 7 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 66 Query: 202 IQEAVKLSESELHGRQIKVAPKR 134 + A+ ++ GR ++ PKR Sbjct: 67 VDAAMNARPHKVDGRVVE--PKR 87
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 38.9 bits (89), Expect = 0.007 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Frame = -2 Query: 385 EAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXV-XRVTILXXKFGQPKGFAYVEFVEA 209 +A+ + + SVFV NV Y T E + HF+ G V + ++ G KG A+V F + Sbjct: 282 KAQNKREDFSVFVRNVPYDATEESLAPHFSKFGSVKYALPVIDKSTGLAKGTAFVAFKDQ 341 Query: 208 EAIQEAVK 185 E +K Sbjct: 342 YTYNECIK 349
>NOP12_CANAL (Q5AHI7) Nucleolar protein 12| Length = 454 Score = 38.9 bits (89), Expect = 0.007 Identities = 28/97 (28%), Positives = 52/97 (53%), Gaps = 10/97 (10%) Frame = -2 Query: 367 DSRSVFVGNVXYACTPEEVQQHFNS--CGXVXRVTIL-XXKFGQPKGFAYVEFVEAEAIQ 197 + R++FVGN+ + E + ++FNS V V I+ K KGFA V+F + ++ Sbjct: 263 NKRTIFVGNLDFEEKEETLWKYFNSKLDQDVESVRIIRDSKTNLGKGFALVQFKDTLSVN 322 Query: 196 EAVKLSESELH------GRQIKVAPKRTNV-PGLKQP 107 +A+ L++ L GR+++++ ++N P L P Sbjct: 323 KALLLNDKPLETGTQKKGRKLRISRAKSNAKPSLMSP 359
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 38.9 bits (89), Expect = 0.007 Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 2/87 (2%) Frame = -2 Query: 388 SEAKEEMDS-RSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXX-KFGQPKGFAYVEFV 215 SEA E + R +F+G + + T E +++HF G + ++ + +GF +V ++ Sbjct: 4 SEAPNEPEQLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYL 63 Query: 214 EAEAIQEAVKLSESELHGRQIKVAPKR 134 + + A+ ++ GR ++ PKR Sbjct: 64 STDEVDAAMTARPHKVDGRVVE--PKR 88
>DAZL_BRARE (Q9YGW7) Deleted in azoospermia-like (DAZ-like protein) (zDazl)| Length = 229 Score = 38.5 bits (88), Expect = 0.009 Identities = 23/78 (29%), Positives = 38/78 (48%) Frame = -2 Query: 373 EMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQE 194 +M ++FVG + E+++ F G V V I+ + G KG+ +V F E IQ Sbjct: 43 KMTPNTLFVGGIDMKVDENEIREFFAKYGSVKEVKIITYRGGICKGYGFVYFSEDVDIQT 102 Query: 193 AVKLSESELHGRQIKVAP 140 V S G+++K+ P Sbjct: 103 IVDQPIS-FKGKKLKLGP 119
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 38.5 bits (88), Expect = 0.009 Identities = 27/103 (26%), Positives = 54/103 (52%), Gaps = 4/103 (3%) Frame = -2 Query: 445 EMQAKVAKEMQG-GDPNAXXSEA---KEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVX 278 E ++ A++ QG DP+ + A E R ++VGN+ A T + ++Q+F G + Sbjct: 42 EGNSEQAEDNQGENDPSVVPANAITGGRETSDRVLYVGNLDKAITEDILKQYFQVGGPIA 101 Query: 277 RVTILXXKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIK 149 + I+ K + +A+VE+ ++ A++ L+G+QI+ Sbjct: 102 NIKIMIDKNNKNVNYAFVEYHQSHDANIALQ----TLNGKQIE 140
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 38.5 bits (88), Expect = 0.009 Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 7/120 (5%) Frame = -2 Query: 424 KEMQGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKF-G 248 ++++ GD E + +FVGN+ ++ + + F G V V ++ K G Sbjct: 68 EDVEDGDDGV--EEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTG 125 Query: 247 QPKGFAYVEFVEAEAIQEAV-KLSESELHGRQIKV-----APKRTNVPGLKQPRGGRGFN 86 + +GF +V E ++ A + + EL GR ++V KR N RGG F+ Sbjct: 126 RSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFD 185
>IF4B_HUMAN (P23588) Eukaryotic translation initiation factor 4B (eIF-4B)| Length = 611 Score = 38.5 bits (88), Expect = 0.009 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 1/72 (1%) Frame = -2 Query: 358 SVFVGNVXYACTPEEVQQHFNSCG-XVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVKL 182 + F+GN+ Y T E +++ F R+ + KGF Y EF + +++ A+ L Sbjct: 97 TAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSL 156 Query: 181 SESELHGRQIKV 146 +E L R+I+V Sbjct: 157 NEESLGNRRIRV 168
>SXL_MEGSC (O01671) Sex-lethal homolog| Length = 321 Score = 38.5 bits (88), Expect = 0.009 Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Frame = -2 Query: 376 EEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKF-GQPKGFAYVEFVEAEAI 200 E++ +++V N+ + T E+++ F G + + IL K G P+G A++ F + E Sbjct: 159 EQLRDTNLYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEA 218 Query: 199 QEAV 188 QEA+ Sbjct: 219 QEAI 222
>IF4H_MOUSE (Q9WUK2) Eukaryotic translation initiation factor 4H (eIF-4H)| (Williams-Beuren syndrome chromosome region 1 protein homolog) Length = 247 Score = 38.1 bits (87), Expect = 0.012 Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 3/110 (2%) Frame = -2 Query: 409 GDPNAXXSEAKEEMDSR---SVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPK 239 G S +++E+ + + +VGN+ + ++ F + + K Sbjct: 22 GSAGGHGSRSQKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFK 81 Query: 238 GFAYVEFVEAEAIQEAVKLSESELHGRQIKVAPKRTNVPGLKQPRGGRGF 89 GF YVEF E ++++EA+ + L R ++V G KQ +GG GF Sbjct: 82 GFCYVEFDEVDSLKEALTYDGALLGDRSLRV----DIAEGRKQDKGGFGF 127
>IF4H_HUMAN (Q15056) Eukaryotic translation initiation factor 4H (eIF-4H)| (Williams-Beuren syndrome chromosome region 1 protein) Length = 247 Score = 38.1 bits (87), Expect = 0.012 Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 3/110 (2%) Frame = -2 Query: 409 GDPNAXXSEAKEEMDSR---SVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPK 239 G S +++E+ + + +VGN+ + ++ F + + K Sbjct: 22 GSAGGHGSRSQKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFK 81 Query: 238 GFAYVEFVEAEAIQEAVKLSESELHGRQIKVAPKRTNVPGLKQPRGGRGF 89 GF YVEF E ++++EA+ + L R ++V G KQ +GG GF Sbjct: 82 GFCYVEFDEVDSLKEALTYDGALLGDRSLRV----DIAEGRKQDKGGFGF 127
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 38.1 bits (87), Expect = 0.012 Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 4/85 (4%) Frame = -2 Query: 364 SRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXK-FGQPKGFAYVEFVEAEAIQEAV 188 ++ +FVG + T E+V+Q+F G V ++ K + +GF +V F + +++ Sbjct: 108 TKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVC 167 Query: 187 KLSESELHGRQI---KVAPKRTNVP 122 ++ E++ + + K PK P Sbjct: 168 EIHFHEINNKMVECKKAQPKEVMSP 192
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 38.1 bits (87), Expect = 0.012 Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 12/114 (10%) Frame = -2 Query: 445 EMQAKVAKEMQGGDPNAXXSEAKEE----------MDSRSVFVGNVXYACTPEEVQQHFN 296 E +K + D A S +EE + SR +FV N+ Y + +++ F+ Sbjct: 264 ETVSKAGAQHSDDDKAAVESSVEEEEVDTNIEHIRLSSR-LFVRNLPYDASESDLEPVFS 322 Query: 295 SCGXVXRVTI-LXXKFGQPKGFAYVEFVEAEAIQEAVK-LSESELHGRQIKVAP 140 G + + + + KGFAYV+++E +A +A K L GR + + P Sbjct: 323 KFGKIEEIHVAFDTRSTTSKGFAYVQYIEPDAAVQAYKELDGKHFQGRLMHILP 376 Score = 31.2 bits (69), Expect = 1.4 Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 2/93 (2%) Frame = -2 Query: 424 KEMQGGDPNAXXSEAKEEMDSRS-VFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFG 248 K M + AK+ R+ + + N+ + T ++V+ F + G + V + Sbjct: 680 KAMDAAEERRREDTAKKIAARRTKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDR 739 Query: 247 QPKGFAYVEFVEAEAIQEAV-KLSESELHGRQI 152 +GF + +FV A + A+ L + L GR++ Sbjct: 740 SARGFGFADFVSAREAENAMDALKNTHLLGRRL 772
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 38.1 bits (87), Expect = 0.012 Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 1/75 (1%) Frame = -2 Query: 367 DSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAV 188 + + V+VGN+ +EV+ F+ G + V I K G+ FA+VEF + ++AV Sbjct: 7 EDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDI---KSGRGPAFAFVEFEDHRDAEDAV 63 Query: 187 KLSES-ELHGRQIKV 146 + + E GR+I+V Sbjct: 64 RARDGYEFDGRRIRV 78
>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)| Length = 633 Score = 38.1 bits (87), Expect = 0.012 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 1/81 (1%) Frame = -2 Query: 412 GGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKF-GQPKG 236 GG P + VFVG + +E+ F G + + ++ GQ +G Sbjct: 148 GGPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRG 207 Query: 235 FAYVEFVEAEAIQEAVKLSES 173 +A++ F EA QEAVKL +S Sbjct: 208 YAFITFCGKEAAQEAVKLCDS 228
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 37.7 bits (86), Expect = 0.015 Identities = 23/85 (27%), Positives = 40/85 (47%) Frame = -2 Query: 406 DPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAY 227 + A ++ +VFV N+ E++++ F G V ++ G+ KGF + Sbjct: 184 EERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGF 243 Query: 226 VEFVEAEAIQEAVKLSESELHGRQI 152 V + EA Q+AV +LHG+ I Sbjct: 244 VRYETHEAAQKAV----LDLHGKSI 264
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 37.7 bits (86), Expect = 0.015 Identities = 23/85 (27%), Positives = 40/85 (47%) Frame = -2 Query: 406 DPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAY 227 + A ++ +VFV N+ E++++ F G V ++ G+ KGF + Sbjct: 184 EERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGF 243 Query: 226 VEFVEAEAIQEAVKLSESELHGRQI 152 V + EA Q+AV +LHG+ I Sbjct: 244 VRYETHEAAQKAV----LDLHGKSI 264
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 37.7 bits (86), Expect = 0.015 Identities = 23/85 (27%), Positives = 40/85 (47%) Frame = -2 Query: 406 DPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAY 227 + A ++ +VFV N+ E++++ F G V ++ G+ KGF + Sbjct: 184 EERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGF 243 Query: 226 VEFVEAEAIQEAVKLSESELHGRQI 152 V + EA Q+AV +LHG+ I Sbjct: 244 VRYETHEAAQKAV----LDLHGKSI 264
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 37.7 bits (86), Expect = 0.015 Identities = 23/85 (27%), Positives = 40/85 (47%) Frame = -2 Query: 406 DPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAY 227 + A ++ +VFV N+ E++++ F G V ++ G+ KGF + Sbjct: 184 EERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGF 243 Query: 226 VEFVEAEAIQEAVKLSESELHGRQI 152 V + EA Q+AV +LHG+ I Sbjct: 244 VRYETHEAAQKAV----LDLHGKSI 264
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 37.7 bits (86), Expect = 0.015 Identities = 23/85 (27%), Positives = 40/85 (47%) Frame = -2 Query: 406 DPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAY 227 + A ++ +VFV N+ E++++ F G V ++ G+ KGF + Sbjct: 184 EERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGF 243 Query: 226 VEFVEAEAIQEAVKLSESELHGRQI 152 V + EA Q+AV +LHG+ I Sbjct: 244 VRYETHEAAQKAV----LDLHGKSI 264
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 37.7 bits (86), Expect = 0.015 Identities = 23/85 (27%), Positives = 40/85 (47%) Frame = -2 Query: 406 DPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAY 227 + A ++ +VFV N+ E++++ F G V ++ G+ KGF + Sbjct: 184 EERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGF 243 Query: 226 VEFVEAEAIQEAVKLSESELHGRQI 152 V + EA Q+AV +LHG+ I Sbjct: 244 VRYETHEAAQKAV----LDLHGKSI 264
>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (mLark) Length = 361 Score = 37.4 bits (85), Expect = 0.020 Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 4/111 (3%) Frame = -2 Query: 421 EMQGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQP 242 ++ G + N S+ K + ++ + VGN+ CT +E++ F G V I+ Sbjct: 59 KLHGVNINVEASKNKSKASTK-LHVGNISPTCTNQELRAKFEEYGPVIECDIV------- 110 Query: 241 KGFAYVEFVEAEAIQEAVK-LSESELHGRQIKV---APKRTNVPGLKQPRG 101 K +A+V AE EA++ L +E G+++ V + PG+ G Sbjct: 111 KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSG 161
>TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein| Length = 348 Score = 37.4 bits (85), Expect = 0.020 Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 6/96 (6%) Frame = -2 Query: 376 EEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQ-----PKGFAYVEFVE 212 ++ D VFVG + + E++ F + G V +VTI + + P G A+V F Sbjct: 39 QQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNN 98 Query: 211 AEAIQEAVK-LSESELHGRQIKVAPKRTNVPGLKQP 107 E + +A++ L+ L R+I V R P +QP Sbjct: 99 QEDVDKAIETLNGKTLDDREIVVQKAR---PVQEQP 131
>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) (Zinc-responsive protein ZD7) Length = 357 Score = 37.4 bits (85), Expect = 0.020 Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 4/111 (3%) Frame = -2 Query: 421 EMQGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQP 242 ++ G + N S+ K + ++ + VGN+ CT +E++ F G V I+ Sbjct: 59 KLHGVNINVEASKNKSKASTK-LHVGNISPTCTNQELRAKFEEYGPVIECDIV------- 110 Query: 241 KGFAYVEFVEAEAIQEAVK-LSESELHGRQIKV---APKRTNVPGLKQPRG 101 K +A+V AE EA++ L +E G+++ V + PG+ G Sbjct: 111 KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSG 161
>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 357 Score = 37.4 bits (85), Expect = 0.020 Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 4/111 (3%) Frame = -2 Query: 421 EMQGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQP 242 ++ G + N S+ K + ++ + VGN+ CT +E++ F G V I+ Sbjct: 59 KLHGVNINVEASKNKSKASTK-LHVGNISPTCTNQELRAKFEEYGPVIECDIV------- 110 Query: 241 KGFAYVEFVEAEAIQEAVK-LSESELHGRQIKV---APKRTNVPGLKQPRG 101 K +A+V AE EA++ L +E G+++ V + PG+ G Sbjct: 111 KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSG 161
>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark| homolog) Length = 359 Score = 37.4 bits (85), Expect = 0.020 Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 4/111 (3%) Frame = -2 Query: 421 EMQGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQP 242 ++ G + N S+ K + ++ + VGN+ CT +E++ F G V I+ Sbjct: 59 KLHGVNINVEASKNKSKASTK-LHVGNISPTCTNQELRAKFEEYGPVIECDIV------- 110 Query: 241 KGFAYVEFVEAEAIQEAVK-LSESELHGRQIKV---APKRTNVPGLKQPRG 101 K +A+V AE EA++ L +E G+++ V + PG+ G Sbjct: 111 KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSG 161
>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 359 Score = 37.4 bits (85), Expect = 0.020 Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 4/111 (3%) Frame = -2 Query: 421 EMQGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQP 242 ++ G + N S+ K + ++ + VGN+ CT +E++ F G V I+ Sbjct: 59 KLHGVNINVEASKNKSKASTK-LHVGNISPTCTNQELRAKFEEYGPVIECDIV------- 110 Query: 241 KGFAYVEFVEAEAIQEAVK-LSESELHGRQIKV---APKRTNVPGLKQPRG 101 K +A+V AE EA++ L +E G+++ V + PG+ G Sbjct: 111 KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSG 161
>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (hLark) Length = 364 Score = 37.0 bits (84), Expect = 0.026 Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 4/111 (3%) Frame = -2 Query: 421 EMQGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQP 242 ++ G + N S+ K + ++ + VGN+ CT +E++ F G V I+ Sbjct: 59 KLHGVNINVEASKNKSKTSTK-LHVGNISPTCTNKELRAKFEEYGPVIECDIV------- 110 Query: 241 KGFAYVEFVEAEAIQEAVK-LSESELHGRQIKV---APKRTNVPGLKQPRG 101 K +A+V AE EA++ L +E G+++ V + PG+ G Sbjct: 111 KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSG 161
>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) Length = 362 Score = 37.0 bits (84), Expect = 0.026 Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 4/111 (3%) Frame = -2 Query: 421 EMQGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQP 242 ++ G + N S+ K + ++ + VGN+ CT +E++ F G V I+ Sbjct: 59 KLHGVNINVEASKNKSKTSTK-LHVGNISPTCTNKELRAKFEEYGPVIECDIV------- 110 Query: 241 KGFAYVEFVEAEAIQEAVK-LSESELHGRQIKV---APKRTNVPGLKQPRG 101 K +A+V AE EA++ L +E G+++ V + PG+ G Sbjct: 111 KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSG 161
>U2AF2_CAEEL (P90978) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 496 Score = 37.0 bits (84), Expect = 0.026 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 6/87 (6%) Frame = -2 Query: 364 SRSVFVGNVXYACTPEEVQQHFNS----CGXVXRV--TILXXKFGQPKGFAYVEFVEAEA 203 SR ++VGN+ + C E + FN CG IL + K FA++EF + Sbjct: 183 SRRLYVGNIPFGCNEEAMLDFFNQQMHLCGLAQAPGNPILLCQINLDKNFAFIEFRSIDE 242 Query: 202 IQEAVKLSESELHGRQIKVAPKRTNVP 122 + G+Q+KV R P Sbjct: 243 TTAGMAFDGINFMGQQLKVRRPRDYQP 269 Score = 30.0 bits (66), Expect = 3.2 Identities = 16/74 (21%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Frame = -2 Query: 364 SRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVK 185 + +F+G + T ++V++ S G + ++ G KG+A+ E+++ +A+ Sbjct: 290 ANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIA 349 Query: 184 -LSESELHGRQIKV 146 L+ +L +Q+ V Sbjct: 350 GLNGMQLGDKQLVV 363
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 37.0 bits (84), Expect = 0.026 Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 1/95 (1%) Frame = -2 Query: 415 QGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXX-KFGQPK 239 QG DP KE R +F+G + + T + +++HF G + ++ + + + Sbjct: 16 QGHDP-------KEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSR 68 Query: 238 GFAYVEFVEAEAIQEAVKLSESELHGRQIKVAPKR 134 GF +V + E + ++ ++ GR ++ PKR Sbjct: 69 GFGFVTYSCVEEVDASMSARPHKVDGRVVE--PKR 101
>RSP6_CAEEL (Q18409) Probable splicing factor, arginine/serine-rich 6| (RNA-binding protein srp-1) (CeSRp20) Length = 179 Score = 37.0 bits (84), Expect = 0.026 Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 1/94 (1%) Frame = -2 Query: 370 MDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEA 191 MD++ V+VG + T +E+++ F+ G + +V + +P GFA+VE+ + ++A Sbjct: 1 MDAK-VYVGGLPSDATSQELEEIFDRFGRIRKVWVAR----RPPGFAFVEYDDVRDAEDA 55 Query: 190 VK-LSESELHGRQIKVAPKRTNVPGLKQPRGGRG 92 V+ L S + G + +V G ++ GGRG Sbjct: 56 VRALDGSRICGVRARVELS----TGQRRGGGGRG 85
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 37.0 bits (84), Expect = 0.026 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Frame = -2 Query: 355 VFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAE----AIQEAV 188 +FVG + + ++++ F+ G V V I+ + G KG+ +V F E +QEA Sbjct: 35 IFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAE 94 Query: 187 KLSESELHGRQIKVAP 140 KL+ + +++ + P Sbjct: 95 KLNYKD---KKLNIGP 107
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 37.0 bits (84), Expect = 0.026 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Frame = -2 Query: 355 VFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAE----AIQEAV 188 +FVG + + ++++ F+ G V V I+ + G KG+ +V F E +QEA Sbjct: 35 IFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAE 94 Query: 187 KLSESELHGRQIKVAP 140 KL+ + +++ + P Sbjct: 95 KLNYKD---KKLNIGP 107
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 37.0 bits (84), Expect = 0.026 Identities = 24/88 (27%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Frame = -2 Query: 364 SRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXX-KFGQPKGFAYVEFVEAEAIQEAV 188 SR V++G++ Y T E++ ++ G V + ++ + G+ KG+A++EF + E+ AV Sbjct: 17 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAV 76 Query: 187 K-LSESELHGRQIKVA-PKRTNVPGLKQ 110 + L+ +L R +K +++ G+ Q Sbjct: 77 RNLNGYQLGSRFLKCGYSSNSDISGVSQ 104
>IF4B_MOUSE (Q8BGD9) Eukaryotic translation initiation factor 4B (eIF-4B)| Length = 611 Score = 37.0 bits (84), Expect = 0.026 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%) Frame = -2 Query: 358 SVFVGNVXYACTPEEVQQHFNSCG-XVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVKL 182 + F+GN+ Y T + ++ F R+ + KGF Y EF + +++ A+ L Sbjct: 97 TAFLGNLPYDVTEDSIKDFFRGLNISAVRLPREPSNPDRLKGFGYAEFEDLDSLLSALSL 156 Query: 181 SESELHGRQIKV 146 +E L R+I+V Sbjct: 157 NEESLGNRRIRV 168
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 37.0 bits (84), Expect = 0.026 Identities = 19/85 (22%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Frame = -2 Query: 385 EAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXX-KFGQPKGFAYVEFVEA 209 E KE R +F+G + + T + +++HF G + ++ + + +GF +V + Sbjct: 19 EPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCV 78 Query: 208 EAIQEAVKLSESELHGRQIKVAPKR 134 E + ++ ++ GR ++ PKR Sbjct: 79 EEVDASMSARPHKVDGRVVE--PKR 101
>U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 auxiliary factor| 50 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 416 Score = 37.0 bits (84), Expect = 0.026 Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 14/98 (14%) Frame = -2 Query: 364 SRSVFVGNVXYACTPEEVQQHFN------SCGXVXRVTILXXKFGQPKGFAYVEFVEAEA 203 +R ++VGN+ + T EE+ + FN +L + K FA++EF + Sbjct: 92 ARRLYVGNIPFGVTEEEMMEFFNQQMHLVGLAQAAGSPVLACQINLDKNFAFLEFRSIDE 151 Query: 202 IQEAVKLSESELHGRQIKV--------APKRTNVPGLK 113 +A+ L G+ +K+ P T+ P +K Sbjct: 152 TTQAMAFDGINLKGQSLKIRRPHDYQPMPGITDTPAIK 189
>FUSIP_MOUSE (Q9R0U0) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (Neural-specific SR pro Length = 262 Score = 37.0 bits (84), Expect = 0.026 Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 2/73 (2%) Frame = -2 Query: 358 SVFVGNVXYACTPEEVQQHFNSCGXVXRVTI-LXXKFGQPKGFAYVEFVEAEAIQEAV-K 185 S+FV NV E++++ F G + V + L +P+GFAYV+F + ++A+ Sbjct: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70 Query: 184 LSESELHGRQIKV 146 L + GRQI++ Sbjct: 71 LDRKWICGRQIEI 83
>FUSIP_HUMAN (O75494) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (40 kDa SR-repressor pr Length = 262 Score = 37.0 bits (84), Expect = 0.026 Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 2/73 (2%) Frame = -2 Query: 358 SVFVGNVXYACTPEEVQQHFNSCGXVXRVTI-LXXKFGQPKGFAYVEFVEAEAIQEAV-K 185 S+FV NV E++++ F G + V + L +P+GFAYV+F + ++A+ Sbjct: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70 Query: 184 LSESELHGRQIKV 146 L + GRQI++ Sbjct: 71 LDRKWICGRQIEI 83
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 36.6 bits (83), Expect = 0.034 Identities = 19/85 (22%), Positives = 41/85 (48%), Gaps = 4/85 (4%) Frame = -2 Query: 364 SRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXK-FGQPKGFAYVEFVEAEAIQEAV 188 ++ +FVG + E+V+Q+F G V ++ K + +GF +V F + +++ Sbjct: 109 TKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVC 168 Query: 187 KLSESELHGRQI---KVAPKRTNVP 122 ++ E++ + + K PK P Sbjct: 169 EIHFHEINNKMVECKKAQPKEVMFP 193
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 36.6 bits (83), Expect = 0.034 Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 3/105 (2%) Frame = -2 Query: 451 LREMQAKVAKEMQGGDPNAXXSEAKEEMDSRS--VFVGNVXYACTPEEVQQHFNSCGXVX 278 LR + K P K ++ + + + N+ + C+ ++++ F G V Sbjct: 81 LRNKSKETRKNENAESPKKEPKHKKAKVADKKARLIIRNLSFKCSEDDLKAVFTHYGTVL 140 Query: 277 RVTILXXKFGQPKGFAYVEFVEAEAIQEAVK-LSESELHGRQIKV 146 V I G+ +GFA+V+F +A+K + E+ GR + V Sbjct: 141 EVNIPKKPDGKMRGFAFVQFKNLLEAGKALKGANMKEIKGRTVAV 185
>GRSF1_MOUSE (Q8C5Q4) G-rich sequence factor 1 (GRSF-1)| Length = 479 Score = 36.6 bits (83), Expect = 0.034 Identities = 18/69 (26%), Positives = 32/69 (46%) Frame = -2 Query: 334 YACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQ 155 Y+C +++ F V ++ + + G AYV+F E E +A+ E+ R Sbjct: 258 YSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRY 317 Query: 154 IKVAPKRTN 128 I++ P R N Sbjct: 318 IEIFPSRRN 326
>RBM10_HUMAN (P98175) RNA-binding protein 10 (RNA-binding motif protein 10)| (DXS8237E) Length = 929 Score = 36.6 bits (83), Expect = 0.034 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 2/90 (2%) Frame = -2 Query: 415 QGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXR-VTILXXKF-GQP 242 QG + E +EE S V + + A T ++++ S G R V ++ K GQ Sbjct: 111 QGEEEEEEEDEEEEEKASNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQS 170 Query: 241 KGFAYVEFVEAEAIQEAVKLSESELHGRQI 152 +GFA+VEF +Q+A + E+ H I Sbjct: 171 RGFAFVEF---SHLQDATRWMEANQHSLNI 197
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 36.6 bits (83), Expect = 0.034 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 1/89 (1%) Frame = -2 Query: 451 LREMQAKVAKEMQGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRV 272 +R + KV+ GG E + +++V N+ T +++ F G + + Sbjct: 176 VRNKRLKVSYARPGG----------ESIKDTNLYVTNLPRTITDDQLDTIFGKYGMIVQK 225 Query: 271 TILXXKF-GQPKGFAYVEFVEAEAIQEAV 188 IL K G+P+G A+V F + E QEA+ Sbjct: 226 NILRDKLTGKPRGVAFVRFNKREEAQEAI 254
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 36.6 bits (83), Expect = 0.034 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Frame = -2 Query: 364 SRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAV- 188 S ++F+ N+ + + F+ G + I + G+ KGF +V F E A +EA+ Sbjct: 124 SGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAID 183 Query: 187 KLSESELHGRQIKVAP 140 L+ L+G++I VAP Sbjct: 184 ALNGMLLNGQEIYVAP 199
>GRSF1_HUMAN (Q12849) G-rich sequence factor 1 (GRSF-1)| Length = 447 Score = 36.6 bits (83), Expect = 0.034 Identities = 18/69 (26%), Positives = 32/69 (46%) Frame = -2 Query: 334 YACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQ 155 Y+C +++ F V ++ + + G AYV+F E E +A+ E+ R Sbjct: 226 YSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRY 285 Query: 154 IKVAPKRTN 128 I++ P R N Sbjct: 286 IEIFPSRRN 294
>RU17_DROME (P17133) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) Length = 448 Score = 36.6 bits (83), Expect = 0.034 Identities = 17/89 (19%), Positives = 47/89 (52%), Gaps = 1/89 (1%) Frame = -2 Query: 433 KVAKEMQGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXK 254 K+ +E+ DP + ++ R++F+ + Y + ++++ F G + ++ ++ + Sbjct: 80 KLEREIALWDPTEIKNATEDPF--RTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQ 137 Query: 253 -FGQPKGFAYVEFVEAEAIQEAVKLSESE 170 G+PKG+A++E+ + A K ++ + Sbjct: 138 ESGKPKGYAFIEYEHERDMHAAYKHADGK 166
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 36.6 bits (83), Expect = 0.034 Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 2/95 (2%) Frame = -2 Query: 424 KEMQGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKF-G 248 ++++ GD E + +FVGN+ ++ + + F G V V ++ K G Sbjct: 68 EDVEDGDEGV--EEERNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTG 125 Query: 247 QPKGFAYVEFVEAEAIQEAV-KLSESELHGRQIKV 146 + +GF +V E ++ A + + EL GR ++V Sbjct: 126 RSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRV 160
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 36.6 bits (83), Expect = 0.034 Identities = 19/85 (22%), Positives = 41/85 (48%), Gaps = 4/85 (4%) Frame = -2 Query: 364 SRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXK-FGQPKGFAYVEFVEAEAIQEAV 188 ++ +FVG + E+V+Q+F G V ++ K + +GF +V F + +++ Sbjct: 109 TKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVC 168 Query: 187 KLSESELHGRQI---KVAPKRTNVP 122 ++ E++ + + K PK P Sbjct: 169 EIHFHEINNKMVECKKAQPKEVMFP 193 Score = 36.6 bits (83), Expect = 0.034 Identities = 21/96 (21%), Positives = 45/96 (46%), Gaps = 4/96 (4%) Frame = -2 Query: 409 GDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXX-KFGQPKGF 233 G P S + D +F+G + + +P+ ++ +F+ G + ++ + +GF Sbjct: 5 GSPGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGF 64 Query: 232 AYVEFVEAEAIQEAVKLSESELHGRQI--KVA-PKR 134 +V F + ++ + + EL + I KVA P+R Sbjct: 65 GFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRR 100
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 36.6 bits (83), Expect = 0.034 Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Frame = -2 Query: 355 VFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAE----AIQEAV 188 +FVG + + ++++ F+ G V V I+ + G KG+ ++ F E +QEA Sbjct: 35 IFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFITFETQEDAQKILQEAE 94 Query: 187 KLSESELHGRQIKVAP 140 KL+ + +++ + P Sbjct: 95 KLNYKD---KKLNIGP 107
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 36.2 bits (82), Expect = 0.044 Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 2/84 (2%) Frame = -2 Query: 385 EAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTI-LXXKFGQPKGFAYVEFVEA 209 E ++ +S +FV N+ Y T E++++ F+ G + + + +PKGFA++ F+ Sbjct: 394 EEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFP 453 Query: 208 E-AIQEAVKLSESELHGRQIKVAP 140 E A++ ++ GR + V P Sbjct: 454 EHAVKAYSEVDGQVFQGRMLHVLP 477 Score = 34.7 bits (78), Expect = 0.13 Identities = 21/92 (22%), Positives = 47/92 (51%), Gaps = 7/92 (7%) Frame = -2 Query: 385 EAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQ----PKGFAYVEF 218 E +E + ++F+ N+ + T E++++ F+ G V +I K GF +VE+ Sbjct: 722 EEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEY 781 Query: 217 VEAEAIQEAVKLSESEL---HGRQIKVAPKRT 131 + E Q+A+K + + H +++++ + T Sbjct: 782 RKPEQAQKALKQLQGHVVDGHKLEVRISERAT 813
>PABPX_SCHPO (Q9P6M8) mRNA export factor crp79 (Polyadenylate-binding protein| crp79) (Poly(A)-binding protein) (PABP) (Meiotic expression up-regulated protein 5) Length = 710 Score = 36.2 bits (82), Expect = 0.044 Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 13/76 (17%) Frame = -2 Query: 373 EMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRV--TILXXKFGQPKG-----------F 233 E +S +++VGN+ + EE+ +HF+ G V + +L + + K + Sbjct: 13 EDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAKPFKPPKNGVQY 72 Query: 232 AYVEFVEAEAIQEAVK 185 +V+FV AE+I+E +K Sbjct: 73 GFVKFVNAESIEEVLK 88
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 36.2 bits (82), Expect = 0.044 Identities = 19/85 (22%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Frame = -2 Query: 385 EAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXX-KFGQPKGFAYVEFVEA 209 + KE R +F+G + + T + +++HF G + ++ + + +GF +V + Sbjct: 27 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 86 Query: 208 EAIQEAVKLSESELHGRQIKVAPKR 134 E + A+ ++ GR ++ PKR Sbjct: 87 EEVDAAMCARPHKVDGRVVE--PKR 109
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 36.2 bits (82), Expect = 0.044 Identities = 19/85 (22%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Frame = -2 Query: 385 EAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXX-KFGQPKGFAYVEFVEA 209 + KE R +F+G + + T + +++HF G + ++ + + +GF +V + Sbjct: 27 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 86 Query: 208 EAIQEAVKLSESELHGRQIKVAPKR 134 E + A+ ++ GR ++ PKR Sbjct: 87 EEVDAAMCARPHKVDGRVVE--PKR 109
>RSP7_CAEEL (O01159) Probable splicing factor, arginine/serine-rich 7 (p54)| Length = 452 Score = 36.2 bits (82), Expect = 0.044 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 1/92 (1%) Frame = -2 Query: 397 AXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSC-GXVXRVTILXXKFGQPKGFAYVE 221 A AK E R+V+VGN+ EV + FN G V + P +AYVE Sbjct: 151 ADTDSAKVEEIRRTVYVGNLPKGVDGNEVLELFNMYFGEVMYARMASGPDALPCAYAYVE 210 Query: 220 FVEAEAIQEAVKLSESELHGRQIKVAPKRTNV 125 F + ++ A++ E R +K+ R + Sbjct: 211 FSQQASVCNALQNDGFEFKERPLKIQHSRVAI 242
>SCE3_SCHPO (O14369) Probable RNA-binding protein sce3| Length = 388 Score = 36.2 bits (82), Expect = 0.044 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 3/76 (3%) Frame = -2 Query: 349 VGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVKLSESE 170 VGN+ + T ++ F G ++ + +GF YVEF A+ + A+ LS + Sbjct: 98 VGNLSFDLTENDLGDFFGE-GVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGED 156 Query: 169 LHGRQIKVA---PKRT 131 L GR +++ P+R+ Sbjct: 157 LMGRPVRITVAEPRRS 172
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 36.2 bits (82), Expect = 0.044 Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 1/87 (1%) Frame = -2 Query: 355 VFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXK-FGQPKGFAYVEFVEAEAIQEAVKLS 179 V+VGN+ + ++Q F+ G V ++ + G+ +GF +V + + + EA+ Sbjct: 246 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAI--- 302 Query: 178 ESELHGRQIKVAPKRTNVPGLKQPRGG 98 S L G+ ++ R NV + PR G Sbjct: 303 -SALDGQNLEGRAIRVNVAEERPPRRG 328
>MODU_DROME (P13469) DNA-binding protein modulo| Length = 542 Score = 36.2 bits (82), Expect = 0.044 Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 2/101 (1%) Frame = -2 Query: 442 MQAKVAKEMQGGDPNAXXSEA--KEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVT 269 +QAK K + GD S+ KEE + R+V VG + T ++++ F V VT Sbjct: 230 LQAK-PKALTLGDNVLSVSQPRNKEENNERTVVVGLIGPNITKDDLKTFFEKVAPVEAVT 288 Query: 268 ILXXKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 146 I + P+ A+V + I +A+KL +EL R I V Sbjct: 289 ISSNRL-MPR--AFVRLASVDDIPKALKLHSTELFSRFITV 326
>FCA_ARATH (O04425) Flowering time control protein FCA| Length = 747 Score = 36.2 bits (82), Expect = 0.044 Identities = 17/75 (22%), Positives = 39/75 (52%), Gaps = 1/75 (1%) Frame = -2 Query: 388 SEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXK-FGQPKGFAYVEFVE 212 ++ + + +FVG+V T EE++ +F G V V ++ K GQ +G +V++ Sbjct: 111 TDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYAT 170 Query: 211 AEAIQEAVKLSESEL 167 ++ A++ +++ Sbjct: 171 SKDADRAIRALHNQI 185
>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 475 Score = 36.2 bits (82), Expect = 0.044 Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 6/79 (7%) Frame = -2 Query: 364 SRSVFVGNVXYACTPEEVQQHFNSCGXVXRVT------ILXXKFGQPKGFAYVEFVEAEA 203 +R ++VGN+ + T E + FN+ + +T +L + Q K FA++EF + Sbjct: 148 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDE 207 Query: 202 IQEAVKLSESELHGRQIKV 146 +A+ G+ +K+ Sbjct: 208 TTQAMAFDGIIFQGQSLKI 226
>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (hU2AF(65)) Length = 475 Score = 36.2 bits (82), Expect = 0.044 Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 6/79 (7%) Frame = -2 Query: 364 SRSVFVGNVXYACTPEEVQQHFNSCGXVXRVT------ILXXKFGQPKGFAYVEFVEAEA 203 +R ++VGN+ + T E + FN+ + +T +L + Q K FA++EF + Sbjct: 148 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDE 207 Query: 202 IQEAVKLSESELHGRQIKV 146 +A+ G+ +K+ Sbjct: 208 TTQAMAFDGIIFQGQSLKI 226
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 36.2 bits (82), Expect = 0.044 Identities = 19/85 (22%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Frame = -2 Query: 385 EAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXX-KFGQPKGFAYVEFVEA 209 + KE R +F+G + + T + +++HF G + ++ + + +GF +V + Sbjct: 27 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 86 Query: 208 EAIQEAVKLSESELHGRQIKVAPKR 134 E + A+ ++ GR ++ PKR Sbjct: 87 EEVDAAMCARPHKVDGRVVE--PKR 109
>RX21_DROME (Q24491) RNA-binding protein Rsf1 (RNA-binding protein Rox21)| Length = 197 Score = 36.2 bits (82), Expect = 0.044 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 5/92 (5%) Frame = -2 Query: 355 VFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVK-LS 179 V+VGN+ ++++ F G + V I P GFA+VEF + ++A L+ Sbjct: 9 VYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAF----NPPGFAFVEFEHRDDAEKACDILN 64 Query: 178 ESELHGRQIKV----APKRTNVPGLKQPRGGR 95 SEL G Q++V R G RGGR Sbjct: 65 GSELLGSQLRVEISKGRPRQGRRGGPMDRGGR 96
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 35.8 bits (81), Expect = 0.058 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Frame = -2 Query: 412 GGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKF-GQPKG 236 GG P ++ +FVG + +E+ F G + + ++ G +G Sbjct: 145 GGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRG 204 Query: 235 FAYVEFVEAEAIQEAVKL 182 +A+V F EA QEAVKL Sbjct: 205 YAFVTFCTKEAAQEAVKL 222
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 35.8 bits (81), Expect = 0.058 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Frame = -2 Query: 412 GGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKF-GQPKG 236 GG P ++ +FVG + +E+ F G + + ++ G +G Sbjct: 145 GGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRG 204 Query: 235 FAYVEFVEAEAIQEAVKL 182 +A+V F EA QEAVKL Sbjct: 205 YAFVTFCTKEAAQEAVKL 222
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 35.8 bits (81), Expect = 0.058 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 1/89 (1%) Frame = -2 Query: 451 LREMQAKVAKEMQGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRV 272 +R + KV+ GG E + +++V N+ T +++ F G + + Sbjct: 193 VRNKRLKVSYARPGG----------ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQK 242 Query: 271 TILXXKF-GQPKGFAYVEFVEAEAIQEAV 188 IL K G+P+G A+V + + E QEA+ Sbjct: 243 NILRDKLTGRPRGVAFVRYNKREEAQEAI 271
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 35.8 bits (81), Expect = 0.058 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 1/89 (1%) Frame = -2 Query: 451 LREMQAKVAKEMQGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRV 272 +R + KV+ GG E + +++V N+ T +++ F G + + Sbjct: 191 VRNKRLKVSYARPGG----------ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQK 240 Query: 271 TILXXKF-GQPKGFAYVEFVEAEAIQEAV 188 IL K G+P+G A+V + + E QEA+ Sbjct: 241 NILRDKLTGRPRGVAFVRYNKREEAQEAI 269
>MK67I_XENLA (Q7SYS2) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 278 Score = 35.8 bits (81), Expect = 0.058 Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Frame = -2 Query: 355 VFVGNVXYACTPEEVQQHFNSCGXVXRVTI-LXXKFGQPKGFAYVEF 218 +++G++ + ++Q++FN G V R+ + K G KG+AYVE+ Sbjct: 43 IYIGHIPKSLIEPQLQEYFNQFGTVTRLRLSRSKKTGNSKGYAYVEY 89
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 35.8 bits (81), Expect = 0.058 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Frame = -2 Query: 412 GGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKF-GQPKG 236 GG P ++ +FVG + +E+ F G + + ++ G +G Sbjct: 55 GGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRG 114 Query: 235 FAYVEFVEAEAIQEAVKL 182 +A+V F EA QEAVKL Sbjct: 115 YAFVTFCTKEAAQEAVKL 132
>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)| Length = 591 Score = 35.4 bits (80), Expect = 0.075 Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 1/71 (1%) Frame = -2 Query: 355 VFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVKLSE 176 +FV N+ + T +++++ F+ CG V I + G+ KG V F AE+ ++A ++ Sbjct: 516 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEI-KMENGKSKGCGTVRFESAESAEKACRIMN 574 Query: 175 S-ELHGRQIKV 146 ++ GR+I V Sbjct: 575 GIKISGREIDV 585
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 35.4 bits (80), Expect = 0.075 Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Frame = -2 Query: 403 PNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKF-GQPKGFAY 227 P + + + +FVG + E ++++F G V V +L K G+ +GFA+ Sbjct: 109 PRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAF 168 Query: 226 VEFVEAEAIQEAV 188 VEF + +A+ +A+ Sbjct: 169 VEFDDYDAVDKAI 181
>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)| Length = 303 Score = 35.4 bits (80), Expect = 0.075 Identities = 22/69 (31%), Positives = 37/69 (53%) Frame = -2 Query: 364 SRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVK 185 SR+V+VGN+ EV+ F+ G V ++ + +P G+A+VEF +A ++A+ Sbjct: 6 SRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP--RPPGYAFVEFDDARDAEDAI- 62 Query: 184 LSESELHGR 158 HGR Sbjct: 63 ------HGR 65
>U2AF2_CAEBR (P90727) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 488 Score = 35.0 bits (79), Expect = 0.099 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 6/87 (6%) Frame = -2 Query: 364 SRSVFVGNVXYACTPEEVQQHFNSCGXVXRVT------ILXXKFGQPKGFAYVEFVEAEA 203 SR ++VGN+ + C E + FN + + IL + K FA++EF + Sbjct: 174 SRRLYVGNIPFGCNEEAMLDFFNQQMHLCNLAQAPGNPILLCQINLDKNFAFIEFRSIDE 233 Query: 202 IQEAVKLSESELHGRQIKVAPKRTNVP 122 + G+Q+KV R P Sbjct: 234 TTAGMAFDGINFMGQQLKVRRPRDYQP 260 Score = 31.2 bits (69), Expect = 1.4 Identities = 21/89 (23%), Positives = 45/89 (50%), Gaps = 2/89 (2%) Frame = -2 Query: 406 DPNAXXSEAKEEMDSRS-VFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFA 230 D NA + +DS + +F+G + T ++V++ S G + ++ G KG+A Sbjct: 266 DMNARMPVSSIVVDSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYA 325 Query: 229 YVEFVEAEAIQEAVK-LSESELHGRQIKV 146 + E+++ +A+ L+ +L +Q+ V Sbjct: 326 FAEYLDPTLTDQAIAGLNGMQLGDKQLVV 354
>HNRH2_MOUSE (P70333) Heterogeneous nuclear ribonucleoprotein H' (hnRNP H')| Length = 449 Score = 35.0 bits (79), Expect = 0.099 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 3/73 (4%) Frame = -2 Query: 355 VFVGNVXYACTPEEVQQHFNSC---GXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVK 185 V V + ++C+ EEV + F+ C V + + G+P G A+VE + ++ A+K Sbjct: 13 VKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLALK 72 Query: 184 LSESELHGRQIKV 146 + R ++V Sbjct: 73 KDRETMGHRYVEV 85
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 35.0 bits (79), Expect = 0.099 Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Frame = -2 Query: 358 SVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAV-KL 182 +VF+ N+ + + + + F+S G + + G+ KG+ +V+F + E Q A+ KL Sbjct: 133 NVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKL 192 Query: 181 SESELHGRQIKV 146 + L+ +Q+ V Sbjct: 193 NGMLLNDKQVFV 204 Score = 32.0 bits (71), Expect = 0.83 Identities = 15/74 (20%), Positives = 37/74 (50%) Frame = -2 Query: 376 EEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQ 197 E++ ++++ N+ + E++++ F+ G V ++ G +GF +V + E Sbjct: 323 EKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEAL 382 Query: 196 EAVKLSESELHGRQ 155 A+K ++ GR+ Sbjct: 383 LAMKEMNGKMIGRK 396 Score = 30.4 bits (67), Expect = 2.4 Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 1/85 (1%) Frame = -2 Query: 397 AXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEF 218 A +EA + + S++VG++ + + FN V + + + G+AYV F Sbjct: 33 AAAAEALQTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNF 92 Query: 217 VEAEAIQEAVK-LSESELHGRQIKV 146 E A++ L+ + + R I++ Sbjct: 93 ANPEDASRAMESLNYAPIRDRPIRI 117
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 35.0 bits (79), Expect = 0.099 Identities = 24/104 (23%), Positives = 51/104 (49%), Gaps = 2/104 (1%) Frame = -2 Query: 451 LREMQAKVAKEMQGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRV 272 L +++A V +E + S+ + +R ++VGN+ +E++ G + Sbjct: 57 LLKVRAVVTEETSSSSTASSSSDGE---GARRLYVGNIPRNLNNDELRTIVEEHGAIEIA 113 Query: 271 TILXXKF-GQPKGFAYVEFVEAEAIQEAV-KLSESELHGRQIKV 146 ++ K+ G+ + F +V E + KL+++E+ GR+IKV Sbjct: 114 EVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKV 157
>IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SNU17)| (Increased sodium tolerance protein 3) Length = 148 Score = 35.0 bits (79), Expect = 0.099 Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 7/105 (6%) Frame = -2 Query: 424 KEMQGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXK-FG 248 KE+Q G + S E D+ +++GN+ T ++ F+ G V + + G Sbjct: 10 KELQSGILSPHQSWHNEYKDNAYIYIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTG 69 Query: 247 QPKGFAYVEFVEAEAIQEAV-KLSESELHGRQIKV-----APKRT 131 + +GFAY+++ + + AV L+ ++ GR +K+ PKR+ Sbjct: 70 ESQGFAYLKYEDQRSTILAVDNLNGFKIGGRALKIDHTFYRPKRS 114
>G3BP_SCHPO (O94260) Putative G3BP-like protein| Length = 434 Score = 35.0 bits (79), Expect = 0.099 Identities = 26/110 (23%), Positives = 50/110 (45%) Frame = -2 Query: 415 QGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKG 236 Q P A +++ E +++ SVFV N+ + ++ + G V + +F + KG Sbjct: 298 QTQQPTAPYTQSNELLET-SVFVKNIPPETSDVSLKSAMSIFGPVKAI-----EFARRKG 351 Query: 235 FAYVEFVEAEAIQEAVKLSESELHGRQIKVAPKRTNVPGLKQPRGGRGFN 86 AYV+FV E +Q A+ +++ + + +R G G + N Sbjct: 352 TAYVDFVNHECVQLALNKKTLQINNATLNIEERRRLFSGKFNKSGDKKSN 401
>YHC4_YEAST (P38741) Hypothetical 80.1 kDa protein in SNF6-SPO11 intergenic| region Length = 713 Score = 35.0 bits (79), Expect = 0.099 Identities = 21/69 (30%), Positives = 37/69 (53%) Frame = -2 Query: 370 MDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEA 191 +D RS+FVG + T EE+ + F++ G + + ++ F FA++++ EA A Sbjct: 343 IDKRSIFVGQLDKETTREELNRRFSTHGKIQDINLI---FKPTNIFAFIKYETEEAAAAA 399 Query: 190 VKLSESELH 164 + ESE H Sbjct: 400 L---ESENH 405
>HNRH1_MOUSE (O35737) Heterogeneous nuclear ribonucleoprotein H (hnRNP H)| Length = 448 Score = 35.0 bits (79), Expect = 0.099 Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 3/73 (4%) Frame = -2 Query: 355 VFVGNVXYACTPEEVQQHFNSC---GXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVK 185 V V + ++C+ +EVQ+ F+ C + + + G+P G A+VE + ++ A+K Sbjct: 12 VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 71 Query: 184 LSESELHGRQIKV 146 + R ++V Sbjct: 72 KDRETMGHRYVEV 84
>HNRH1_HUMAN (P31943) Heterogeneous nuclear ribonucleoprotein H (hnRNP H)| Length = 448 Score = 35.0 bits (79), Expect = 0.099 Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 3/73 (4%) Frame = -2 Query: 355 VFVGNVXYACTPEEVQQHFNSC---GXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVK 185 V V + ++C+ +EVQ+ F+ C + + + G+P G A+VE + ++ A+K Sbjct: 12 VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 71 Query: 184 LSESELHGRQIKV 146 + R ++V Sbjct: 72 KDRETMGHRYVEV 84
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 35.0 bits (79), Expect = 0.099 Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 1/81 (1%) Frame = -2 Query: 385 EAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAE 206 +AK + + N+ + C+ ++++ F G V V I G+ +GF +V+F Sbjct: 105 KAKVADKKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLL 164 Query: 205 AIQEAVK-LSESELHGRQIKV 146 +A+K ++ E+ GR + V Sbjct: 165 EAGKALKGMNMKEIKGRTVAV 185
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 34.7 bits (78), Expect = 0.13 Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Frame = -2 Query: 355 VFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVE-AEAIQEAVKLS 179 +F+G + + ++ F G + V ++ + + +GFA++ F A+A A ++ Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMN 69 Query: 178 ESELHGRQIKV 146 LHG+ IKV Sbjct: 70 GKSLHGKAIKV 80
>BOULE_DROME (Q24207) Protein boule| Length = 228 Score = 34.7 bits (78), Expect = 0.13 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Frame = -2 Query: 355 VFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVKLSE 176 +FVG + T ++ + F++ G V I+ + G KG+ +V F E QEA +L Sbjct: 35 IFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDRAGVSKGYGFVTF---ETEQEAQRLQA 91 Query: 175 S----ELHGRQIKVAP 140 L R++ +AP Sbjct: 92 DGECVVLRDRKLNIAP 107
>HNRH2_HUMAN (P55795) Heterogeneous nuclear ribonucleoprotein H' (hnRNP H')| (FTP-3) Length = 449 Score = 34.7 bits (78), Expect = 0.13 Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 3/73 (4%) Frame = -2 Query: 355 VFVGNVXYACTPEEVQQHFNSC---GXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVK 185 V V + ++C+ +EV + F+ C + + + G+P G A+VE E ++ A+K Sbjct: 13 VKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLALK 72 Query: 184 LSESELHGRQIKV 146 + R ++V Sbjct: 73 KDRETMGHRYVEV 85
>MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3644 Score = 34.7 bits (78), Expect = 0.13 Identities = 18/59 (30%), Positives = 34/59 (57%) Frame = -2 Query: 367 DSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEA 191 ++R ++VGN+ E++ +HF G V V IL + + A+V+FV+ ++ Q+A Sbjct: 4 ETRHLWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSEGGVAAFVDFVDIKSAQKA 62
>MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3664 Score = 34.7 bits (78), Expect = 0.13 Identities = 18/59 (30%), Positives = 34/59 (57%) Frame = -2 Query: 367 DSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEA 191 ++R ++VGN+ E++ +HF G V V IL + + A+V+FV+ ++ Q+A Sbjct: 4 ETRHLWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSEGGVAAFVDFVDIKSAQKA 62
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 34.3 bits (77), Expect = 0.17 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Frame = -2 Query: 361 RSVFVGNVXYACTPEEVQQHFNSCGXVXRVTI-LXXKFGQPKGFAYVEFVEAEAIQEAV- 188 R ++VG + + + F G + + I L + + +GFA+VEF AE A+ Sbjct: 6 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65 Query: 187 KLSESELHGRQIKV 146 ++ESEL GR I+V Sbjct: 66 NMNESELFGRTIRV 79
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 34.3 bits (77), Expect = 0.17 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Frame = -2 Query: 361 RSVFVGNVXYACTPEEVQQHFNSCGXVXRVTI-LXXKFGQPKGFAYVEFVEAEAIQEAV- 188 R ++VG + + + F G + + I L + + +GFA+VEF AE A+ Sbjct: 6 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65 Query: 187 KLSESELHGRQIKV 146 ++ESEL GR I+V Sbjct: 66 NMNESELFGRTIRV 79
>MK67I_XENTR (Q6GL69) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 276 Score = 34.3 bits (77), Expect = 0.17 Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Frame = -2 Query: 355 VFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXK-FGQPKGFAYVEF 218 +++G++ A +++++F+ G V R+ + K G KG+AYVEF Sbjct: 43 IYIGHIPRALYEPQLREYFSQFGTVTRLRLSRSKKTGNSKGYAYVEF 89
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 34.3 bits (77), Expect = 0.17 Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 1/89 (1%) Frame = -2 Query: 355 VFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQP-KGFAYVEFVEAEAIQEAVKLS 179 VF+G + T +++ FN G V V I+ + + +GF ++ F E +++ Sbjct: 98 VFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNER 157 Query: 178 ESELHGRQIKVAPKRTNVPGLKQPRGGRG 92 L+G+Q+++ +PR G G Sbjct: 158 YINLNGKQVEIKK--------AEPRDGSG 178
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 33.9 bits (76), Expect = 0.22 Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 2/84 (2%) Frame = -2 Query: 355 VFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQP-KGFAYVEFVEAEAIQEAV-KL 182 V+VG++ + + ++ F G + + + Q KGFA+VE+ E Q A+ ++ Sbjct: 132 VYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQM 191 Query: 181 SESELHGRQIKVAPKRTNVPGLKQ 110 + + + GR IKV + +N+P +Q Sbjct: 192 NGALMGGRNIKVG-RPSNMPQAQQ 214
>HSH49_YEAST (Q99181) Protein HSH49| Length = 213 Score = 33.9 bits (76), Expect = 0.22 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 3/74 (4%) Frame = -2 Query: 358 SVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQP-KGFAYVEFVEAEAIQEAVKL 182 +V+VGN+ T E++ + F V R+ K Q +G+A++EF Q A+K+ Sbjct: 10 TVYVGNIDPRITKEQLYELFIQINPVLRIKYPKDKVLQAYQGYAFIEFYNQGDAQYAIKI 69 Query: 181 SES--ELHGRQIKV 146 + L+ R IKV Sbjct: 70 MNNTVRLYDRLIKV 83
>HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4| protein) Length = 689 Score = 33.9 bits (76), Expect = 0.22 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Frame = -2 Query: 355 VFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVKLSE 176 +FV N+ + T + ++ FN CG V I + G+ KG V+F E + A ++ Sbjct: 614 IFVRNLPFDFTWKMLKDKFNECGHVLYADI-KMENGKSKGCGVVKFESPEVAERACRMMN 672 Query: 175 S-ELHGRQIKV 146 +L GR+I V Sbjct: 673 GMKLSGREIDV 683
>RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1| Length = 283 Score = 33.9 bits (76), Expect = 0.22 Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 3/87 (3%) Frame = -2 Query: 355 VFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQ--PKGFAYVEFVEAEAIQEAVK- 185 V +G + T + + + F++ G + + + ++ KG+AYVEF E ++A+K Sbjct: 140 VHIGRLTRNVTKDHILEIFSTYGKIKMIDMPVDRYHPHLSKGYAYVEFEAPEEAEKALKH 199 Query: 184 LSESELHGRQIKVAPKRTNVPGLKQPR 104 + ++ G++I + T P PR Sbjct: 200 MDGGQIDGQEITASAVLTPWPMRPMPR 226
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 33.9 bits (76), Expect = 0.22 Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 1/80 (1%) Frame = -2 Query: 382 AKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEA 203 A E+ + V N+ + T E+V+ F G + V + + KGF Y+++ + Sbjct: 333 ASAEIPFHRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPIS 392 Query: 202 IQEAV-KLSESELHGRQIKV 146 + A+ K++ +L GR ++V Sbjct: 393 ARNALEKMNGFDLAGRNMRV 412
>HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 728 Score = 33.9 bits (76), Expect = 0.22 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Frame = -2 Query: 355 VFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVKLSE 176 +FV N+ + T + ++ FN CG V I + G+ KG V+F E + A ++ Sbjct: 653 IFVRNLPFDFTWKMLKDKFNECGHVLYADI-KMENGKSKGCGVVKFESPEVAERACRMMN 711 Query: 175 S-ELHGRQIKV 146 +L GR+I V Sbjct: 712 GMKLSGREIDV 722
>HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 729 Score = 33.9 bits (76), Expect = 0.22 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Frame = -2 Query: 355 VFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVKLSE 176 +FV N+ + T + ++ FN CG V I + G+ KG V+F E + A ++ Sbjct: 654 IFVRNLPFDFTWKMLKDKFNECGHVLYADI-KMENGKSKGCGVVKFESPEVAERACRMMN 712 Query: 175 S-ELHGRQIKV 146 +L GR+I V Sbjct: 713 GMKLSGREIDV 723
>MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)| Length = 600 Score = 33.5 bits (75), Expect = 0.29 Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 3/84 (3%) Frame = -2 Query: 388 SEAKEEMDSRS--VFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFV 215 S +E + S+ +FV N+ + T +++++ F+ CG V I + G+ KG V F Sbjct: 512 SGMRERIGSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEI-KMENGKSKGCGTVRFD 570 Query: 214 EAEAIQEAVKLSES-ELHGRQIKV 146 E+ ++A ++ ++ GR+I V Sbjct: 571 SPESAEKACRIMNGIKISGREIDV 594
>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3| subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3g) Length = 256 Score = 33.5 bits (75), Expect = 0.29 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 2/80 (2%) Frame = -2 Query: 379 KEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKF-GQPKGFAYVEFVEAEA 203 + D + V N+ +E++ F G V R+ I K G PKGFA+V F + Sbjct: 170 RNRSDENTCRVTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDD 229 Query: 202 IQEAV-KLSESELHGRQIKV 146 A+ +L++ ++ +KV Sbjct: 230 AARAIAELNDIRMYHMVLKV 249
>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)| Length = 419 Score = 33.1 bits (74), Expect = 0.37 Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 4/110 (3%) Frame = -2 Query: 418 MQGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPK 239 + G N S+ K + ++ + VGN+ +CT +E++ F G V I+ K Sbjct: 60 LNGMAMNVEMSKGKPKTSTK-LHVGNISSSCTNQELRAKFEEYGPVVECDIV-------K 111 Query: 238 GFAYVEFVEAEAIQEAVK-LSESELHGR--QIKVAPKR-TNVPGLKQPRG 101 +A+V E EA+ L + G+ +K++ R PG+ + G Sbjct: 112 DYAFVHMERVEDAMEAISGLDNTAFQGKLMSVKLSTSRLRTAPGMGERTG 161
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 33.1 bits (74), Expect = 0.37 Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 1/72 (1%) Frame = -2 Query: 358 SVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAV-KL 182 ++F+ N+ + + + + F+S G + + G+ KG+ +V+F + E+ Q A+ KL Sbjct: 137 NIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKL 196 Query: 181 SESELHGRQIKV 146 + ++ +Q+ V Sbjct: 197 NGMLMNDKQVFV 208 Score = 30.4 bits (67), Expect = 2.4 Identities = 17/79 (21%), Positives = 38/79 (48%) Frame = -2 Query: 376 EEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQ 197 E+ ++++ N+ + E++++ F+ G V ++ G +GF +V + E Sbjct: 327 EKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEAL 386 Query: 196 EAVKLSESELHGRQIKVAP 140 A+ SE++G+ I P Sbjct: 387 RAL----SEMNGKMIGRKP 401
>PPIE_SCHMA (Q26548) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) Length = 273 Score = 33.1 bits (74), Expect = 0.37 Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 1/33 (3%) Frame = -2 Query: 241 KGFAYVEFVEAEAIQEAV-KLSESELHGRQIKV 146 +GFA+VEF E E A+ ++ESE+ GR I+V Sbjct: 11 RGFAFVEFEEVEDAMSAIDNMNESEIFGRTIRV 43
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 33.1 bits (74), Expect = 0.37 Identities = 25/127 (19%), Positives = 56/127 (44%), Gaps = 7/127 (5%) Frame = -2 Query: 472 MEEEXXALREMQAKVAKEMQGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNS 293 ME+ AL E+ + K + + +M + +VF+ N+ A + + F++ Sbjct: 131 MEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSA 190 Query: 292 CGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVK------LSESELH-GRQIKVAPKR 134 G + + + G KG+ +V F E+ A++ L++ +++ G + ++ Sbjct: 191 FGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQ 250 Query: 133 TNVPGLK 113 + V LK Sbjct: 251 SKVEALK 257 Score = 28.5 bits (62), Expect = 9.2 Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 2/94 (2%) Frame = -2 Query: 364 SRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPK-GFAYVEFVEAEAIQEAV 188 S S++VG + + T + + FNS G V + + + G+AYV F E ++A+ Sbjct: 79 SASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKAL 138 Query: 187 -KLSESELHGRQIKVAPKRTNVPGLKQPRGGRGF 89 +L+ + + GR ++ + + P L++ G F Sbjct: 139 DELNYTLIKGRPCRIMWSQRD-PSLRKMGTGNVF 171
>NOP3_YEAST (Q01560) Nucleolar protein 3 (Mitochondrial targeting suppressor 1| protein) (Nuclear polyadenylated RNA-binding protein 1) Length = 414 Score = 33.1 bits (74), Expect = 0.37 Identities = 27/95 (28%), Positives = 41/95 (43%) Frame = -2 Query: 424 KEMQGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQ 245 + M G P E E+ + +FV E+ + F G + V IL Sbjct: 106 EHMHGRPPMHHRQEG--ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL------ 157 Query: 244 PKGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAP 140 GFA+VEF EAE+ +A++ E+HG+ P Sbjct: 158 -NGFAFVEFEEAESAAKAIE----EVHGKSFANQP 187
>SFR12_RAT (Q9JKL7) Splicing factor, arginine/serine-rich 12| (Serine-arginine-rich splicing regulatory protein 86) (SRrp86) (SR-related protein of 86 kDa) Length = 494 Score = 32.7 bits (73), Expect = 0.49 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Frame = -2 Query: 361 RSVFVGNV-XYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVK 185 R+V+VGN+ T +++ + F G V V + + QP FA+VEF + ++ A+ Sbjct: 69 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDET-QPTRFAFVEFADQNSVPRALA 127 Query: 184 LSESELHGRQIKV 146 + R +K+ Sbjct: 128 FNGVMFGDRPLKI 140
>SFR12_MOUSE (Q8BZX4) Splicing factor, arginine/serine-rich 12| (Serine-arginine-rich splicing regulatory protein 86) (SRrp86) Length = 494 Score = 32.7 bits (73), Expect = 0.49 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Frame = -2 Query: 361 RSVFVGNV-XYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVK 185 R+V+VGN+ T +++ + F G V V + + QP FA+VEF + ++ A+ Sbjct: 69 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDET-QPTRFAFVEFADQNSVPRALA 127 Query: 184 LSESELHGRQIKV 146 + R +K+ Sbjct: 128 FNGVMFGDRPLKI 140
>SFR12_HUMAN (Q8WXA9) Splicing factor, arginine/serine-rich 12| (Serine-arginine-rich splicing regulatory protein 86) (SRrp86) (Splicing regulatory protein 508) (SRrp508) Length = 508 Score = 32.7 bits (73), Expect = 0.49 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Frame = -2 Query: 361 RSVFVGNV-XYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVK 185 R+V+VGN+ T +++ + F G V V + + QP FA+VEF + ++ A+ Sbjct: 66 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDET-QPTRFAFVEFADQNSVPRALA 124 Query: 184 LSESELHGRQIKV 146 + R +K+ Sbjct: 125 FNGVMFGDRPLKI 137
>NOP12_DEBHA (Q6BTS9) Nucleolar protein 12| Length = 462 Score = 32.7 bits (73), Expect = 0.49 Identities = 22/94 (23%), Positives = 50/94 (53%), Gaps = 7/94 (7%) Frame = -2 Query: 367 DSRSVFVGNVXYACTPEEVQQHFNS--CGXVXRVTIL-XXKFGQPKGFAYVEFVEAEAIQ 197 + R++FVGN+ + E + ++FNS V V ++ K KGFA V+F + ++ Sbjct: 264 NKRTIFVGNLDFEEKEETLWRYFNSKTDNDVESVRVIRDAKTNVGKGFALVQFKDTLSVN 323 Query: 196 EAVKLSESELHG---RQIKVAPKRTNV-PGLKQP 107 +++ L++ + R+++++ + + P + P Sbjct: 324 KSLLLNDKPMSAEKKRKLRISKAKAHTKPSILSP 357
>MK67I_MOUSE (Q91VE6) MKI67 FHA domain-interacting nucleolar phosphoprotein| (Nucleolar protein interacting with the FHA domain of pKI-67) (mNIFK) Length = 317 Score = 32.7 bits (73), Expect = 0.49 Identities = 21/102 (20%), Positives = 46/102 (45%), Gaps = 1/102 (0%) Frame = -2 Query: 454 ALREMQAKVAKEMQGGDPNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXR 275 AL ++Q + K Q + KE+++ V++G++ + + + G + R Sbjct: 25 ALTQIQGRTKKPQQ---------KKKEKLNRGVVYLGHLPSTLSESHIYNYCAQFGDISR 75 Query: 274 VTILXXK-FGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQI 152 + K G KG+A+VEF + + + ++ L G ++ Sbjct: 76 FRLSRSKRTGNSKGYAFVEFESEDVAKIVAETMDNYLFGERL 117
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 32.3 bits (72), Expect = 0.64 Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 1/72 (1%) Frame = -2 Query: 358 SVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAV-KL 182 +VF+ N+ A + + F++ G + + + G KG+ +V F EA ++ K+ Sbjct: 91 NVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKV 150 Query: 181 SESELHGRQIKV 146 + L+G+++ V Sbjct: 151 NGMLLNGKKVYV 162
>YCQ9_SCHPO (O13674) Hypothetical RNA-binding protein C74.09 in chromosome III| Length = 654 Score = 32.3 bits (72), Expect = 0.64 Identities = 18/61 (29%), Positives = 34/61 (55%) Frame = -2 Query: 364 SRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVK 185 SR+VF+GN+ + +E+++ F G + + IL K A+V F+ I++A+K Sbjct: 298 SRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKIL-----SKKNIAFVHFLN---IRDAIK 349 Query: 184 L 182 + Sbjct: 350 V 350
>RBP1_DROME (Q02427) RNA-binding protein 1| Length = 144 Score = 32.0 bits (71), Expect = 0.83 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Frame = -2 Query: 355 VFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVK-LS 179 V+VGN+ + + E++ F G + V + P GFA+VEF + ++A + L Sbjct: 13 VYVGNLGSSASKHEIEGAFAKYGPLRNVWVAR----NPPGFAFVEFEDRRDAEDATRALD 68 Query: 178 ESELHGRQIKV 146 + G +I+V Sbjct: 69 GTRCCGTRIRV 79
>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I| Length = 219 Score = 32.0 bits (71), Expect = 0.83 Identities = 17/78 (21%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Frame = -2 Query: 355 VFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVKLSE 176 +FVGN+ E + Q F+ + + ++ + G+ +GF +V F +++ +A + Sbjct: 32 LFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREKN 91 Query: 175 SELHG-RQIKVAPKRTNV 125 + G R +K++ ++V Sbjct: 92 GKYIGSRPVKLSRATSDV 109
>RBM25_HUMAN (P49756) Probable RNA-binding protein 25 (RNA-binding motif protein| 25) (RNA-binding region-containing protein 7) (Protein S164) Length = 784 Score = 32.0 bits (71), Expect = 0.83 Identities = 20/69 (28%), Positives = 33/69 (47%) Frame = -2 Query: 358 SVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVKLS 179 +VFVGN+ + ++Q CG V + G+ + F + E+ E E+ A++L Sbjct: 29 TVFVGNISEKASDMLIRQLLAKCGLVLSWKRVQGASGKLQAFGFCEYKEPESTLRALRL- 87 Query: 178 ESELHGRQI 152 LH QI Sbjct: 88 ---LHDLQI 93
>SFRS7_HUMAN (Q16629) Splicing factor, arginine/serine-rich 7 (Splicing factor| 9G8) Length = 238 Score = 31.6 bits (70), Expect = 1.1 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 1/71 (1%) Frame = -2 Query: 355 VFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVK-LS 179 V+VGN+ E+++ F+ G + V I P GFA+VEF + ++AV+ L Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTVWIAR----NPPGFAFVEFEDPRDAEDAVRGLD 68 Query: 178 ESELHGRQIKV 146 + G +++V Sbjct: 69 GKVICGSRVRV 79
>SFRS7_MOUSE (Q8BL97) Splicing factor, arginine/serine-rich 7| Length = 267 Score = 31.6 bits (70), Expect = 1.1 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 1/71 (1%) Frame = -2 Query: 355 VFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVK-LS 179 V+VGN+ E+++ F+ G + V I P GFA+VEF + ++AV+ L Sbjct: 42 VYVGNLGTGAGKGELERAFSYYGPLRTVWIAR----NPPGFAFVEFEDPRDAEDAVRGLD 97 Query: 178 ESELHGRQIKV 146 + G +++V Sbjct: 98 GKVICGSRVRV 108
>NOP12_GIBZE (Q4IQW0) Nucleolar protein 12| Length = 559 Score = 31.6 bits (70), Expect = 1.1 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 5/79 (6%) Frame = -2 Query: 325 TPEEVQQH----FNSCGXVXRVTILX-XKFGQPKGFAYVEFVEAEAIQEAVKLSESELHG 161 TP ++++ F++ G V V ++ K KGFAYV+F +A ++ A+ L + Sbjct: 360 TPSDIEEGLWRTFSTQGKVENVRVVRDSKTRVGKGFAYVQFYDANDVEAALLLDGKKFP- 418 Query: 160 RQIKVAPKRTNVPGLKQPR 104 + P++ V K PR Sbjct: 419 ---PMLPRKLRVTRAKDPR 434
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 30.4 bits (67), Expect = 2.4 Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 1/103 (0%) Frame = -2 Query: 397 AXXSEAKEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEF 218 A S + +FVGN+ EV++ F G V I+ + + +V Sbjct: 74 AAKSRRAPNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIV-------RNYGFVHL 126 Query: 217 VEAEAIQEAVKLSESELHGRQIKVAPKRTNVPGLK-QPRGGRG 92 +Q+A+K EL+GR + P + V + +P+ G G Sbjct: 127 DCVGDVQDAIK----ELNGRVVDGQPLKVQVSTSRVRPKPGMG 165
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 30.4 bits (67), Expect = 2.4 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 1/72 (1%) Frame = -2 Query: 364 SRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVK 185 S + + N+ + T +++ F+S G + V + +GF +VE+ Q A++ Sbjct: 718 STKILIKNLPFEATKRDIRDLFSSQGQLKSVRLPKKFDNTTRGFGFVEYSTVREAQSAME 777 Query: 184 -LSESELHGRQI 152 L + L GR + Sbjct: 778 ALKHTHLLGRHL 789
>AKAP9_RABIT (Q28628) A-kinase anchor protein 9 (Protein kinase A-anchoring| protein 9) (PRKA9) (A-kinase anchor protein 120 kDa) (AKAP 120) (Fragment) Length = 1087 Score = 30.4 bits (67), Expect = 2.4 Identities = 19/44 (43%), Positives = 23/44 (52%) Frame = -2 Query: 232 AYVEFVEAEAIQEAVKLSESELHGRQIKVAPKRTNVPGLKQPRG 101 A V V+ EA+QE VKL + + P RT VPGL Q G Sbjct: 571 ALVSQVQLEAVQEYVKLCADK---PAVSSDPARTEVPGLSQLAG 611
>SFRS3_MOUSE (P84104) Splicing factor, arginine/serine-rich 3 (Pre-mRNA-splicing| factor SRP20) (X16 protein) Length = 164 Score = 30.0 bits (66), Expect = 3.2 Identities = 21/68 (30%), Positives = 33/68 (48%) Frame = -2 Query: 355 VFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVKLSE 176 V+VGN+ E+++ F G + V + P GFA+VEF + +AV+ Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVWVAR----NPPGFAFVEFEDPRDAADAVR--- 64 Query: 175 SELHGRQI 152 EL GR + Sbjct: 65 -ELDGRTL 71
>SFRS3_HUMAN (P84103) Splicing factor, arginine/serine-rich 3 (Pre-mRNA-splicing| factor SRP20) Length = 164 Score = 30.0 bits (66), Expect = 3.2 Identities = 21/68 (30%), Positives = 33/68 (48%) Frame = -2 Query: 355 VFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVKLSE 176 V+VGN+ E+++ F G + V + P GFA+VEF + +AV+ Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVWVAR----NPPGFAFVEFEDPRDAADAVR--- 64 Query: 175 SELHGRQI 152 EL GR + Sbjct: 65 -ELDGRTL 71
>SPEN_DROME (Q8SX83) Protein split ends| Length = 5560 Score = 30.0 bits (66), Expect = 3.2 Identities = 17/74 (22%), Positives = 40/74 (54%), Gaps = 1/74 (1%) Frame = -2 Query: 364 SRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVK 185 +R++F+GN+ T E++ HF + G + + I K +A+ ++ + ++ +A++ Sbjct: 655 TRTLFIGNLEKDITAGELRSHFEAFGEIIEIDI---KKQGLNAYAFCQYSDIVSVVKAMR 711 Query: 184 LSESE-LHGRQIKV 146 + E L +IK+ Sbjct: 712 KMDGEHLGSNRIKL 725
>SFRS1_BRARE (Q6NYA0) Splicing factor, arginine/serine-rich 1| Length = 245 Score = 30.0 bits (66), Expect = 3.2 Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 1/89 (1%) Frame = -2 Query: 355 VFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVKLSE 176 ++VGN+ ++V+ F G + + + + G P FA+VEF + ++AV + Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPP--FAFVEFEDPRDAEDAVYGRD 74 Query: 175 S-ELHGRQIKVAPKRTNVPGLKQPRGGRG 92 + G +++V R+ G + GG G Sbjct: 75 GYDYDGYRLRVEFPRSGRGGGRGGGGGGG 103
>SF1L1_BRARE (Q7SXP4) Splicing factor, arginine/serine-rich 1-like protein 1| Length = 245 Score = 30.0 bits (66), Expect = 3.2 Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 1/89 (1%) Frame = -2 Query: 355 VFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVKLSE 176 ++VGN+ ++V+ F G + + + + G P FA+VEF + ++AV + Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPP--FAFVEFEDPRDAEDAVYARD 74 Query: 175 S-ELHGRQIKVAPKRTNVPGLKQPRGGRG 92 + G +++V + PR GRG Sbjct: 75 GYDYDGYRLRV----------EFPRSGRG 93
>MK67I_HUMAN (Q9BYG3) MKI67 FHA domain-interacting nucleolar phosphoprotein| (Nucleolar protein interacting with the FHA domain of pKI-67) (hNIFK) (Nucleolar phosphoprotein Nopp34) Length = 293 Score = 29.6 bits (65), Expect = 4.1 Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 1/77 (1%) Frame = -2 Query: 379 KEEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXK-FGQPKGFAYVEFVEAEA 203 +E++ V+V ++ ++ +F+ G V R + K G KG+A+VEF + Sbjct: 39 QEQLTPGVVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDV 98 Query: 202 IQEAVKLSESELHGRQI 152 + + + L G ++ Sbjct: 99 AKIVAETMNNYLFGERL 115
>RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 29.6 bits (65), Expect = 4.1 Identities = 16/71 (22%), Positives = 37/71 (52%), Gaps = 3/71 (4%) Frame = -2 Query: 355 VFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQ--PKGFAYVEFVEAEAIQEAVK- 185 V +G + T + + + F++ G + + + + KG+AYVEF + ++A+K Sbjct: 163 VHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKH 222 Query: 184 LSESELHGRQI 152 + ++ G++I Sbjct: 223 MDGGQIDGQEI 233
>RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 29.6 bits (65), Expect = 4.1 Identities = 16/71 (22%), Positives = 37/71 (52%), Gaps = 3/71 (4%) Frame = -2 Query: 355 VFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQ--PKGFAYVEFVEAEAIQEAVK- 185 V +G + T + + + F++ G + + + + KG+AYVEF + ++A+K Sbjct: 163 VHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKH 222 Query: 184 LSESELHGRQI 152 + ++ G++I Sbjct: 223 MDGGQIDGQEI 233
>RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 29.6 bits (65), Expect = 4.1 Identities = 16/71 (22%), Positives = 37/71 (52%), Gaps = 3/71 (4%) Frame = -2 Query: 355 VFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQ--PKGFAYVEFVEAEAIQEAVK- 185 V +G + T + + + F++ G + + + + KG+AYVEF + ++A+K Sbjct: 163 VHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKH 222 Query: 184 LSESELHGRQI 152 + ++ G++I Sbjct: 223 MDGGQIDGQEI 233
>RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 29.6 bits (65), Expect = 4.1 Identities = 16/71 (22%), Positives = 37/71 (52%), Gaps = 3/71 (4%) Frame = -2 Query: 355 VFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQ--PKGFAYVEFVEAEAIQEAVK- 185 V +G + T + + + F++ G + + + + KG+AYVEF + ++A+K Sbjct: 163 VHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKH 222 Query: 184 LSESELHGRQI 152 + ++ G++I Sbjct: 223 MDGGQIDGQEI 233
>RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain 1 (SR-related| protein LDC2) Length = 305 Score = 29.6 bits (65), Expect = 4.1 Identities = 16/71 (22%), Positives = 37/71 (52%), Gaps = 3/71 (4%) Frame = -2 Query: 355 VFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQ--PKGFAYVEFVEAEAIQEAVK- 185 V +G + T + + + F++ G + + + + KG+AYVEF + ++A+K Sbjct: 163 VHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKH 222 Query: 184 LSESELHGRQI 152 + ++ G++I Sbjct: 223 MDGGQIDGQEI 233
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 29.3 bits (64), Expect = 5.4 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 2/79 (2%) Frame = -2 Query: 376 EEMDSRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKF-GQPKGFAYVEFVEAEAI 200 E +V+VG + + + + F G V + + GQ +G+ +VEF+ E Sbjct: 8 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDA 67 Query: 199 QEAVKLSES-ELHGRQIKV 146 A+K+ +L+G+ I+V Sbjct: 68 DYAIKIMNMIKLYGKPIRV 86
>PRT1_PICAN (P12806) Putative PRT1 protein| Length = 220 Score = 29.3 bits (64), Expect = 5.4 Identities = 18/52 (34%), Positives = 29/52 (55%) Frame = -2 Query: 301 FNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 146 F+ CG V + + + GQ KGF +E A A +AVK +L+G+++ V Sbjct: 63 FSQCGKVVDM-FMPLENGQTKGFLIIELDSAAAADKAVK----QLNGKKLDV 109
>NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 476 Score = 28.9 bits (63), Expect = 7.1 Identities = 17/59 (28%), Positives = 30/59 (50%) Frame = -2 Query: 364 SRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAV 188 S S+ V N+ + E +++ F+ G V R ++ G+P G VEF A ++A+ Sbjct: 152 SASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKAL 210
>SRP1_SCHPO (Q10193) Pre-mRNA-splicing factor srp1| Length = 275 Score = 28.9 bits (63), Expect = 7.1 Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 8/97 (8%) Frame = -2 Query: 361 RSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVKL 182 R+++V E+ F G + R I + + FA+VE+ ++ ++A Sbjct: 7 RTLYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDAEDAY-- 64 Query: 181 SESELHGRQIKVAPKRTNVPGLKQP--------RGGR 95 E+HGR+++ V KQP RGGR Sbjct: 65 --YEVHGRRLERGGGVLRVEWAKQPPPSGPGSKRGGR 99
>NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 471 Score = 28.9 bits (63), Expect = 7.1 Identities = 17/59 (28%), Positives = 30/59 (50%) Frame = -2 Query: 364 SRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAV 188 S S+ V N+ + E +++ F+ G V R ++ G+P G VEF A ++A+ Sbjct: 147 SASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKAL 205
>NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding protein (NonO| protein) (54 kDa nuclear RNA- and DNA-binding protein) (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55) (DNA-binding p52/p100 complex, 52 kDa subunit) Length = 471 Score = 28.9 bits (63), Expect = 7.1 Identities = 17/59 (28%), Positives = 30/59 (50%) Frame = -2 Query: 364 SRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAV 188 S S+ V N+ + E +++ F+ G V R ++ G+P G VEF A ++A+ Sbjct: 147 SASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKAL 205
>DYNA_XENLA (Q6PCJ1) Dynactin-1| Length = 1232 Score = 28.9 bits (63), Expect = 7.1 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = -2 Query: 403 PNAXXSEAKEEMDSRSVFVGNVXYACTPEEVQQH 302 P+ +AKEE +V++G V +C P + Q H Sbjct: 1181 PSTDFIKAKEEKKEDTVYIGKVTLSCQPGQGQIH 1214
>NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 473 Score = 28.9 bits (63), Expect = 7.1 Identities = 17/59 (28%), Positives = 30/59 (50%) Frame = -2 Query: 364 SRSVFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAV 188 S S+ V N+ + E +++ F+ G V R ++ G+P G VEF A ++A+ Sbjct: 149 SASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKAL 207
>SFRS1_PONPY (Q5R7H2) Splicing factor, arginine/serine-rich 1| Length = 247 Score = 28.5 bits (62), Expect = 9.2 Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 1/89 (1%) Frame = -2 Query: 355 VFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVKLSE 176 ++VGN+ ++++ F G + + + + G P FA+VEF + ++AV + Sbjct: 17 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPP--FAFVEFEDPRDAEDAVYGRD 74 Query: 175 S-ELHGRQIKVAPKRTNVPGLKQPRGGRG 92 + G +++V + PR GRG Sbjct: 75 GYDYDGYRLRV----------EFPRSGRG 93
>SFRS1_MOUSE (Q6PDM2) Splicing factor, arginine/serine-rich 1| Length = 247 Score = 28.5 bits (62), Expect = 9.2 Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 1/89 (1%) Frame = -2 Query: 355 VFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVKLSE 176 ++VGN+ ++++ F G + + + + G P FA+VEF + ++AV + Sbjct: 17 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPP--FAFVEFEDPRDAEDAVYGRD 74 Query: 175 S-ELHGRQIKVAPKRTNVPGLKQPRGGRG 92 + G +++V + PR GRG Sbjct: 75 GYDYDGYRLRV----------EFPRSGRG 93
>SFRS1_HUMAN (Q07955) Splicing factor, arginine/serine-rich 1 (pre-mRNA-splicing| factor SF2, P33 subunit) (Alternative splicing factor ASF-1) Length = 247 Score = 28.5 bits (62), Expect = 9.2 Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 1/89 (1%) Frame = -2 Query: 355 VFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVKLSE 176 ++VGN+ ++++ F G + + + + G P FA+VEF + ++AV + Sbjct: 17 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPP--FAFVEFEDPRDAEDAVYGRD 74 Query: 175 S-ELHGRQIKVAPKRTNVPGLKQPRGGRG 92 + G +++V + PR GRG Sbjct: 75 GYDYDGYRLRV----------EFPRSGRG 93
>SFRS1_XENTR (Q6DII2) Splicing factor, arginine/serine-rich 1| Length = 267 Score = 28.5 bits (62), Expect = 9.2 Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 1/89 (1%) Frame = -2 Query: 355 VFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVKLSE 176 ++VGN+ ++++ F G + + + + G P FA+VEF + ++AV + Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPP--FAFVEFEDPRDAEDAVYGRD 75 Query: 175 S-ELHGRQIKVAPKRTNVPGLKQPRGGRG 92 + G +++V + PR GRG Sbjct: 76 GYDYDGYRLRV----------EFPRSGRG 94
>CAZ_DROME (Q27294) RNA-binding protein cabeza (Sarcoma-associated RNA-binding| fly homolog) (P19) Length = 399 Score = 28.5 bits (62), Expect = 9.2 Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 10/99 (10%) Frame = -2 Query: 358 SVFVGNVXYACTPEEVQQHFNSCGXVX--------RVTILXXK-FGQPKGFAYVEFVEAE 206 ++FV + + T ++++ HF + G + ++ + K G KG A V + + Sbjct: 121 TIFVSGMDPSTTEQDIETHFGAIGIIKKDKRTMKPKIWLYKNKETGASKGEATVTYDDTN 180 Query: 205 AIQEAVKLSES-ELHGRQIKVAPKRTNVPGLKQPRGGRG 92 A Q A++ + + +G IKV+ + K GG G Sbjct: 181 AAQSAIEWFDGRDFNGNAIKVSLAQRQNNWNKGGGGGGG 219
>SFRS1_CHICK (Q5ZML3) Splicing factor, arginine/serine-rich 1| Length = 256 Score = 28.5 bits (62), Expect = 9.2 Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 1/89 (1%) Frame = -2 Query: 355 VFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXKFGQPKGFAYVEFVEAEAIQEAVKLSE 176 ++VGN+ ++++ F G + + + + G P FA+VEF + ++AV + Sbjct: 17 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPP--FAFVEFEDPRDAEDAVYGRD 74 Query: 175 S-ELHGRQIKVAPKRTNVPGLKQPRGGRG 92 + G +++V + PR GRG Sbjct: 75 GYDYDGYRLRV----------EFPRSGRG 93
>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| (Nucleolar phosphoprotein NOPP34-like protein) Length = 269 Score = 28.5 bits (62), Expect = 9.2 Identities = 21/96 (21%), Positives = 44/96 (45%), Gaps = 12/96 (12%) Frame = -2 Query: 355 VFVGNVXYACTPEEVQQHFNSCGXVXRVTILXXK-FGQPKGFAYVEFVEAEAIQEAVKLS 179 ++VG++ +++ +F G V R+ + K G KG+ +VEF E + + Sbjct: 47 LYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFECDEVAKIVAETM 106 Query: 178 ESELHGRQI----KVAPKRT-------NVPGLKQPR 104 + L G +I + P++ ++ G K+P+ Sbjct: 107 NNYLMGERIIKCHVIPPEKVHEKLFVGSIAGFKKPK 142
>ZG14_HUMAN (Q9Y3A4) Gastric cancer antigen Zg14| Length = 280 Score = 28.5 bits (62), Expect = 9.2 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 17/77 (22%) Frame = -2 Query: 361 RSVFVGNVXYACTPEEVQQHFNSCGXVXRVTI------------LXXKFGQPK---GF-- 233 R++FV NV CT E + + ++CG V V + KF PK GF Sbjct: 59 RTLFVLNVPPYCTEESLSRLLSTCGLVQSVELQEKPDLAESPKESRSKFFHPKPVPGFQV 118 Query: 232 AYVEFVEAEAIQEAVKL 182 AYV F + + A+ L Sbjct: 119 AYVVFQKPSGVSAALAL 135 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,026,128 Number of Sequences: 219361 Number of extensions: 834211 Number of successful extensions: 2722 Number of sequences better than 10.0: 249 Number of HSP's better than 10.0 without gapping: 2563 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2683 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
