ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd19e22 |
|---|---|
| Clone Library Name | barley_pub |
>WA_EMENI (Q03149) Conidial yellow pigment biosynthesis polyketide synthase (EC| 2.3.1.-) (PKS) Length = 2157 Score = 32.3 bits (72), Expect = 1.1 Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 6/97 (6%) Frame = +3 Query: 201 PACLLVVSPVDEAQEEPAHDSPGDWVGYVAAQPTVHVSDDAGSCEPPNGPQPAPLNQGSS 380 P L + +D + P + +W G + V D G C P P P P GS Sbjct: 2032 PHFLAFIDSLDAYKAVPLPFNEQEWKGKLPKTYLVWAKD--GVCPKPGDPWPEPAEDGSK 2089 Query: 381 AGRRFTFVFAS------SGWSLHFGRDLRYGLGGLPV 473 R ++ ++ +GW G++ +GG+ V Sbjct: 2090 DPREMVWLLSNRTDLGPNGWDTLVGKE---NIGGITV 2123
>SACB_STRSL (Q55242) Levansucrase precursor (EC 2.4.1.10)| (Beta-D-fructofuranosyl transferase) (Sucrose 6-fructosyl transferase) Length = 969 Score = 31.6 bits (70), Expect = 1.9 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 4/63 (6%) Frame = +3 Query: 168 SRGCIAGGDRQ----PACLLVVSPVDEAQEEPAHDSPGDWVGYVAAQPTVHVSDDAGSCE 335 +RG IAG + + P+ L+ ++ D + P + GDW+ +++ VHV D S + Sbjct: 645 NRGGIAGAENKSTWAPSFLIKMNADDTTEVLPKMTNQGDWIWDKSSESLVHVGDQ-NSAK 703 Query: 336 PPN 344 PN Sbjct: 704 LPN 706
>SOX17_MOUSE (Q61473) Transcription factor SOX-17| Length = 419 Score = 31.2 bits (69), Expect = 2.5 Identities = 40/130 (30%), Positives = 50/130 (38%), Gaps = 10/130 (7%) Frame = +3 Query: 144 LATHGGQLSRGCIAGG----DRQPACLLVVSPVDEAQEEPAHDS---PGDWVGYVAAQPT 302 ++ H G R C G D P SP+D +++PA + PGD Sbjct: 195 MSPHMGPHYRDCQGLGAPALDGYPLPTPDTSPLDGVEQDPAFFAAPLPGDCPA-AGTYTY 253 Query: 303 VHVSDDAGSCEPPNGPQ---PAPLNQGSSAGRRFTFVFASSGWSLHFGRDLRYGLGGLPV 473 VSD A S EPP GP P P +G + A +LH L YG G P Sbjct: 254 APVSDYAVSVEPPAGPMRVGPDP------SGPAMPGILAPPS-ALH----LYYGAMGSPA 302 Query: 474 QQAHREAHKQ 503 A R H Q Sbjct: 303 ASAGRGFHAQ 312
>VG29_HAEIN (P44225) Mu-like prophage FluMu protein gp29| Length = 520 Score = 29.6 bits (65), Expect = 7.2 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 11/67 (16%) Frame = -1 Query: 211 KQAGWRSPP----------AMHPRDSWPPCVASFVQQF-WPRHVHTLRTEHFVRFFLAAL 65 K WR P ++ RD P + +QQF W +HV +T + R L Sbjct: 155 KNVHWRDPAWFMTPAYQRNSLRLRDGTPE--GAEMQQFGWVKHVARAKTGYLSRIGLVRT 212 Query: 64 LVWPEIW 44 LVWP I+ Sbjct: 213 LVWPFIF 219
>YJDB_ECOLI (P30845) UPF0141 protein yjdB| Length = 547 Score = 29.6 bits (65), Expect = 7.2 Identities = 17/59 (28%), Positives = 29/59 (49%) Frame = +3 Query: 402 VFASSGWSLHFGRDLRYGLGGLPVQQAHREAHKQVLAQGEHRRRNLXLRLISQTAPGSN 578 + AS W H L LP+ + +AH+ L Q E +R+NL + ++ +T+ N Sbjct: 199 IVASWSWYSH------QRLANLPLVRIGEDAHRNPLMQNE-KRKNLTILIVGETSRAEN 250
>SOX17_HUMAN (Q9H6I2) Transcription factor SOX-17| Length = 414 Score = 29.6 bits (65), Expect = 7.2 Identities = 35/129 (27%), Positives = 47/129 (36%), Gaps = 10/129 (7%) Frame = +3 Query: 144 LATHGGQLSRGCIAGG----DRQPACLLVVSPVDEAQEEPAHDS---PGDWVGYVAAQPT 302 L H G R C + G D P SP+D +PA + PGD Sbjct: 195 LPPHMGGHYRDCQSLGAPPLDGYPLPTPDTSPLDGVDPDPAFFAAPMPGDCPA-AGTYSY 253 Query: 303 VHVSDDAGSCEPPNGPQPAPLNQGSSAGRRFTFVFASSGWSLHFGRDLRYGLG---GLPV 473 VSD AG EPP GP L + + S +++G G G G + Sbjct: 254 AQVSDYAGPPEPPAGPMHPRLGPEPAGPSIPGLLAPPSALHVYYGAMGSPGAGGGRGFQM 313 Query: 474 QQAHREAHK 500 Q H+ H+ Sbjct: 314 QPQHQHQHQ 322
>SOX13_MOUSE (Q04891) SOX-13 protein| Length = 985 Score = 29.6 bits (65), Expect = 7.2 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 4/76 (5%) Frame = +3 Query: 234 EAQEEPAHDSPGDWVGYVAAQP--TVHVSDDAGSCEPPNGPQPAPLNQGSSAGRRFTFVF 407 E ++EP H++P V QP S DA + + P +P + GS +R Sbjct: 9 EEKKEPCHEAPQGAAPAVETQPGDPAPASQDAATAKAPPQDCASPESSGSPEPKRPAASE 68 Query: 408 ASSGWS--LHFGRDLR 449 A+SG L F R+L+ Sbjct: 69 AASGSQERLDFNRNLQ 84
>COX10_MAGGR (P0C150) Protoheme IX farnesyltransferase, mitochondrial precursor| (EC 2.5.1.-) (Heme O synthase) Length = 552 Score = 29.6 bits (65), Expect = 7.2 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = -2 Query: 294 VPPHTQPNRQENRERVPPELHRQERRRVSRQA 199 +PP T R + E +PP RQ RR + QA Sbjct: 121 IPPSTSTPRPQVDEELPPHRRRQAARRTAEQA 152
>LYAG_HUMAN (P10253) Lysosomal alpha-glucosidase precursor (EC 3.2.1.20) (Acid| maltase) (Aglucosidase alfa) [Contains: 76 kDa lysosomal alpha-glucosidase; 70 kDa lysosomal alpha-glucosidase] Length = 952 Score = 29.3 bits (64), Expect = 9.5 Identities = 17/42 (40%), Positives = 19/42 (45%) Frame = +3 Query: 225 PVDEAQEEPAHDSPGDWVGYVAAQPTVHVSDDAGSCEPPNGP 350 P A EPA S G WV A T++V AG P GP Sbjct: 788 PPPAAPREPAIHSEGQWVTLPAPLDTINVHLRAGYIIPLQGP 829
>NOL10_HUMAN (Q9BSC4) Nucleolar protein 10| Length = 688 Score = 29.3 bits (64), Expect = 9.5 Identities = 11/26 (42%), Positives = 19/26 (73%) Frame = -2 Query: 273 NRQENRERVPPELHRQERRRVSRQAG 196 + Q+ +++ +LHRQER+R+ R AG Sbjct: 650 SEQQKKQQEAEKLHRQERKRLRRSAG 675 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,547,642 Number of Sequences: 219361 Number of extensions: 1676037 Number of successful extensions: 5723 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 5419 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5719 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5481822624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
