ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd19e22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 147 5e-32
2gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 147 5e-32
3emb|AL928754.2|CNS08CBR Oryza sativa chromosome 12, . BAC OSJNBa... 147 5e-32
4gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 48 0.034
5gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 42 2.1
6emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 42 2.1
7gb|CP000141.1| Carboxydothermus hydrogenoformans Z-2901, complet... 40 8.3
8ref|XM_616991.2| PREDICTED: Bos taurus similar to transient rece... 40 8.3
9gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome 40 8.3
10ref|XM_748660.1| Aspergillus fumigatus Af293 hypothetical protei... 40 8.3
11emb|AL135921.5| Human DNA sequence from clone RP4-682C13 on chro... 40 8.3
12emb|AJ297786.2|RGR297786 Ruta graveolens mRNA for putative acrid... 40 8.3
13emb|AJ297787.1|RGR297787 Ruta graveolens mRNA for putative acrid... 40 8.3
14emb|BX465851.5| Zebrafish DNA sequence from clone CH211-215H21 i... 40 8.3
15gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 8.3
16gb|AC121765.2| Homo sapiens chromosome 3 clone RP11-767D18, comp... 40 8.3
17emb|BX322661.17| Zebrafish DNA sequence from clone RP71-78H1 in ... 40 8.3
18emb|AL929549.16| Zebrafish DNA sequence from clone CH211-149L22 ... 40 8.3
19emb|BX324136.11| Zebrafish DNA sequence from clone DKEY-31C13 in... 40 8.3
20gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 40 8.3
21gb|AC159259.2| Mus musculus BAC clone RP24-83G17 from chromosome... 40 8.3
22emb|BX005328.9| Zebrafish DNA sequence from clone DKEY-63D15 in ... 40 8.3
23gb|AC117517.7| Homo sapiens X BAC RP13-356M24 (Roswell Park Canc... 40 8.3
24gb|AC134025.2| Homo sapiens 3 BAC RP11-231I13 (Roswell Park Canc... 40 8.3
25emb|Z34088.1|RGACRSYN R.graveolens (AIG) mRNA for acridone synthase 40 8.3
26emb|CR388132.9| Zebrafish DNA sequence from clone DKEY-23A23 in ... 40 8.3
27emb|BX649380.7| Zebrafish DNA sequence from clone CH211-87P6 in ... 40 8.3
28emb|CR377223.6| Zebrafish DNA sequence from clone DKEY-12O15 in ... 40 8.3
29emb|AL928707.5| Zebrafish DNA sequence from clone CH211-207M2 in... 40 8.3
30emb|BX088721.5| Zebrafish DNA sequence from clone DKEY-14M2 in l... 40 8.3
31gb|AF069555.1|AF069555 Meleagris gallopavo G protein-coupled rec... 40 8.3
32gb|AE015925.1| Chlamydophila caviae GPIC, complete genome 40 8.3

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  147 bits (74), Expect = 5e-32
 Identities = 131/150 (87%)
 Strand = Plus / Minus

                                                                            
Query: 214      tcgtcgtctctcctgtcgatgaagctcaggaggaacccgctcacgattctcctggcgatt 273
                |||| |||||| ||||| |||||||||| |||||| ||||| ||||||||||||||||| 
Sbjct: 24976995 tcgttgtctctgctgtcaatgaagctcaagaggaagccgctgacgattctcctggcgatg 24976936

                                                                            
Query: 274      gggttgggtatgtggcggcacagccgaccgtccacgtaagcgacgacgccggaagctgcg 333
                |||||||||||||||||||| ||||| ||||| ||||| ||||| | ||||||  | |||
Sbjct: 24976935 gggttgggtatgtggcggcagagccggccgtcgacgtaggcgaccatgccggagacggcg 24976876

                                              
Query: 334      aacctcccaacggtccacagcctgctccgc 363
                |||||||| ||| |||||| ||||||||||
Sbjct: 24976875 aacctccccacgctccacaccctgctccgc 24976846



 Score =  119 bits (60), Expect = 1e-23
 Identities = 86/95 (90%)
 Strand = Plus / Minus

                                                                            
Query: 451      atggccttggtggcctcccggtgcagcaggcgcaccgcgaagctcacaaacaggtgctcg 510
                |||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||| 
Sbjct: 24976746 atggccttggtggcctcccggtgcagcacgcgcacggcgaagctcacgaacaggtgctct 24976687

                                                   
Query: 511      cacagggtgagcaccgtcggcgcaatcttncactc 545
                   |||||||||||||||||||||||| | |||||
Sbjct: 24976686 gcgagggtgagcaccgtcggcgcaatcctccactc 24976652



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  147 bits (74), Expect = 5e-32
 Identities = 131/150 (87%)
 Strand = Plus / Minus

                                                                            
Query: 214      tcgtcgtctctcctgtcgatgaagctcaggaggaacccgctcacgattctcctggcgatt 273
                |||| |||||| ||||| |||||||||| |||||| ||||| ||||||||||||||||| 
Sbjct: 24905201 tcgttgtctctgctgtcaatgaagctcaagaggaagccgctgacgattctcctggcgatg 24905142

                                                                            
Query: 274      gggttgggtatgtggcggcacagccgaccgtccacgtaagcgacgacgccggaagctgcg 333
                |||||||||||||||||||| ||||| ||||| ||||| ||||| | ||||||  | |||
Sbjct: 24905141 gggttgggtatgtggcggcagagccggccgtcgacgtaggcgaccatgccggagacggcg 24905082

                                              
Query: 334      aacctcccaacggtccacagcctgctccgc 363
                |||||||| ||| |||||| ||||||||||
Sbjct: 24905081 aacctccccacgctccacaccctgctccgc 24905052



 Score =  119 bits (60), Expect = 1e-23
 Identities = 86/95 (90%)
 Strand = Plus / Minus

                                                                            
Query: 451      atggccttggtggcctcccggtgcagcaggcgcaccgcgaagctcacaaacaggtgctcg 510
                |||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||| 
Sbjct: 24904952 atggccttggtggcctcccggtgcagcacgcgcacggcgaagctcacgaacaggtgctct 24904893

                                                   
Query: 511      cacagggtgagcaccgtcggcgcaatcttncactc 545
                   |||||||||||||||||||||||| | |||||
Sbjct: 24904892 gcgagggtgagcaccgtcggcgcaatcctccactc 24904858



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>emb|AL928754.2|CNS08CBR Oryza sativa chromosome 12, . BAC OSJNBa0056D07 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 146686

 Score =  147 bits (74), Expect = 5e-32
 Identities = 131/150 (87%)
 Strand = Plus / Plus

                                                                          
Query: 214    tcgtcgtctctcctgtcgatgaagctcaggaggaacccgctcacgattctcctggcgatt 273
              |||| |||||| ||||| |||||||||| |||||| ||||| ||||||||||||||||| 
Sbjct: 130172 tcgttgtctctgctgtcaatgaagctcaagaggaagccgctgacgattctcctggcgatg 130231

                                                                          
Query: 274    gggttgggtatgtggcggcacagccgaccgtccacgtaagcgacgacgccggaagctgcg 333
              |||||||||||||||||||| ||||| ||||| ||||| ||||| | ||||||  | |||
Sbjct: 130232 gggttgggtatgtggcggcagagccggccgtcgacgtaggcgaccatgccggagacggcg 130291

                                            
Query: 334    aacctcccaacggtccacagcctgctccgc 363
              |||||||| ||| |||||| ||||||||||
Sbjct: 130292 aacctccccacgctccacaccctgctccgc 130321



 Score =  119 bits (60), Expect = 1e-23
 Identities = 86/95 (90%)
 Strand = Plus / Plus

                                                                          
Query: 451    atggccttggtggcctcccggtgcagcaggcgcaccgcgaagctcacaaacaggtgctcg 510
              |||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||| 
Sbjct: 130421 atggccttggtggcctcccggtgcagcacgcgcacggcgaagctcacgaacaggtgctct 130480

                                                 
Query: 511    cacagggtgagcaccgtcggcgcaatcttncactc 545
                 |||||||||||||||||||||||| | |||||
Sbjct: 130481 gcgagggtgagcaccgtcggcgcaatcctccactc 130515



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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                               
Query: 175     gatgcattgcaggcggtgatcgccagcctgcc 206
               |||||||||||| ||||||||| |||||||||
Sbjct: 3515839 gatgcattgcagccggtgatcgacagcctgcc 3515870



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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 516     ggtgagcaccgtcggcgcaat 536
               |||||||||||||||||||||
Sbjct: 1492913 ggtgagcaccgtcggcgcaat 1492933



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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 516     ggtgagcaccgtcggcgcaat 536
               |||||||||||||||||||||
Sbjct: 2827681 ggtgagcaccgtcggcgcaat 2827701



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>gb|CP000141.1| Carboxydothermus hydrogenoformans Z-2901, complete genome
          Length = 2401520

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 496     acaaacaggtgctcgcacagggtg 519
               ||||||||||| ||||||||||||
Sbjct: 1134761 acaaacaggtgttcgcacagggtg 1134784



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>ref|XM_616991.2| PREDICTED: Bos taurus similar to transient receptor potential cation
            channel, subfamily M, member 6 (LOC536844), partial mRNA
          Length = 2952

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 231  gatgaagctcaggaggaacc 250
            ||||||||||||||||||||
Sbjct: 1194 gatgaagctcaggaggaacc 1213



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>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
          Length = 2467205

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 407    cgcctccagtgggtggtccc 426
              ||||||||||||||||||||
Sbjct: 489461 cgcctccagtgggtggtccc 489442



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>ref|XM_748660.1| Aspergillus fumigatus Af293 hypothetical protein (Afu5g08840)
           partial mRNA
          Length = 1887

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 487 gcgaagctcacaaacaggtg 506
           ||||||||||||||||||||
Sbjct: 890 gcgaagctcacaaacaggtg 909



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>emb|AL135921.5| Human DNA sequence from clone RP4-682C13 on chromosome Xq23-24,
            complete sequence
          Length = 10610

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 25   tatagaaagaaggaaaattc 44
            ||||||||||||||||||||
Sbjct: 1087 tatagaaagaaggaaaattc 1068



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>emb|AJ297786.2|RGR297786 Ruta graveolens mRNA for putative acridone synthase (acs3 gene)
          Length = 1435

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 544 tcaggctcatttcgcagacggcgc 567
           |||||||| |||||||||||||||
Sbjct: 680 tcaggctcttttcgcagacggcgc 703



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>emb|AJ297787.1|RGR297787 Ruta graveolens mRNA for putative acridone synthase (acs4 gene)
          Length = 1406

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 544 tcaggctcatttcgcagacggcgc 567
           |||||||| |||||||||||||||
Sbjct: 677 tcaggctcttttcgcagacggcgc 700



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>emb|BX465851.5| Zebrafish DNA sequence from clone CH211-215H21 in linkage group 6,
             complete sequence
          Length = 145469

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    aattccaaatttcaggccaa 59
             ||||||||||||||||||||
Sbjct: 19719 aattccaaatttcaggccaa 19738



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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 499     aacaggtgctcgcacagggt 518
               ||||||||||||||||||||
Sbjct: 5908041 aacaggtgctcgcacagggt 5908022



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>gb|AC121765.2| Homo sapiens chromosome 3 clone RP11-767D18, complete sequence
          Length = 194455

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 30    aaagaaggaaaattccaaatttca 53
             |||||| |||||||||||||||||
Sbjct: 17690 aaagaaagaaaattccaaatttca 17667



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>emb|BX322661.17| Zebrafish DNA sequence from clone RP71-78H1 in linkage group 9,
             complete sequence
          Length = 146527

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    tgactatagaaagaaggaaa 40
             ||||||||||||||||||||
Sbjct: 77294 tgactatagaaagaaggaaa 77275



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>emb|AL929549.16| Zebrafish DNA sequence from clone CH211-149L22 in linkage group 5,
            complete sequence
          Length = 146059

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 40   aattccaaatttcaggccaa 59
            ||||||||||||||||||||
Sbjct: 5487 aattccaaatttcaggccaa 5468



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>emb|BX324136.11| Zebrafish DNA sequence from clone DKEY-31C13 in linkage group 10,
             complete sequence
          Length = 255306

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 122   gggccaaaactgttgtacaa 141
             ||||||||||||||||||||
Sbjct: 75094 gggccaaaactgttgtacaa 75075



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>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 471     gtgcagcaggcgcaccgcga 490
               ||||||||||||||||||||
Sbjct: 1540167 gtgcagcaggcgcaccgcga 1540186



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>gb|AC159259.2| Mus musculus BAC clone RP24-83G17 from chromosome 3, complete sequence
          Length = 191517

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    aattccaaatttcaggccaa 59
             ||||||||||||||||||||
Sbjct: 94702 aattccaaatttcaggccaa 94721



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>emb|BX005328.9| Zebrafish DNA sequence from clone DKEY-63D15 in linkage group 8, complete
              sequence
          Length = 272840

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 40     aattccaaatttcaggccaa 59
              ||||||||||||||||||||
Sbjct: 269407 aattccaaatttcaggccaa 269388



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>gb|AC117517.7| Homo sapiens X BAC RP13-356M24 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 121628

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 38    aaaattccaaatttcaggcc 57
             ||||||||||||||||||||
Sbjct: 61260 aaaattccaaatttcaggcc 61241



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>gb|AC134025.2| Homo sapiens 3 BAC RP11-231I13 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 183111

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 30     aaagaaggaaaattccaaatttca 53
              |||||| |||||||||||||||||
Sbjct: 140087 aaagaaagaaaattccaaatttca 140110



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>emb|Z34088.1|RGACRSYN R.graveolens (AIG) mRNA for acridone synthase
          Length = 1398

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 544 tcaggctcatttcgcagacggcgc 567
           |||||||| |||||||||||||||
Sbjct: 687 tcaggctcttttcgcagacggcgc 710



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>emb|CR388132.9| Zebrafish DNA sequence from clone DKEY-23A23 in linkage group 4,
            complete sequence
          Length = 206525

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 40   aattccaaatttcaggccaa 59
            ||||||||||||||||||||
Sbjct: 5735 aattccaaatttcaggccaa 5716



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>emb|BX649380.7| Zebrafish DNA sequence from clone CH211-87P6 in linkage group 4, complete
              sequence
          Length = 172167

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 40     aattccaaatttcaggccaa 59
              ||||||||||||||||||||
Sbjct: 113043 aattccaaatttcaggccaa 113024



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 40     aattccaaatttcaggccaa 59
              ||||||||||||||||||||
Sbjct: 109231 aattccaaatttcaggccaa 109212



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>emb|CR377223.6| Zebrafish DNA sequence from clone DKEY-12O15 in linkage group 18,
              complete sequence
          Length = 211465

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 40     aattccaaatttcaggccaa 59
              ||||||||||||||||||||
Sbjct: 201227 aattccaaatttcaggccaa 201246



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 40     aattccaaatttcaggccaa 59
              ||||||||||||||||||||
Sbjct: 197834 aattccaaatttcaggccaa 197853



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>emb|AL928707.5| Zebrafish DNA sequence from clone CH211-207M2 in linkage group 21,
              complete sequence
          Length = 206304

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 40     aattccaaatttcaggccaa 59
              ||||||||||||||||||||
Sbjct: 140371 aattccaaatttcaggccaa 140390



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>emb|BX088721.5| Zebrafish DNA sequence from clone DKEY-14M2 in linkage group 14, complete
              sequence
          Length = 231054

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 40     aattccaaatttcaggccaa 59
              ||||||||||||||||||||
Sbjct: 162501 aattccaaatttcaggccaa 162520



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>gb|AF069555.1|AF069555 Meleagris gallopavo G protein-coupled receptor p2y3 (p2y3) gene,
           complete cds
          Length = 1074

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 395 caccttcgtcttcgcctcca 414
           ||||||||||||||||||||
Sbjct: 468 caccttcgtcttcgcctcca 487



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>gb|AE015925.1| Chlamydophila caviae GPIC, complete genome
          Length = 1173390

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 3      atgcgttcttcctgtaattg 22
              ||||||||||||||||||||
Sbjct: 443958 atgcgttcttcctgtaattg 443977


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,032,155
Number of Sequences: 3902068
Number of extensions: 4032155
Number of successful extensions: 74663
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74316
Number of HSP's gapped (non-prelim): 344
length of query: 613
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 590
effective length of database: 17,143,297,704
effective search space: 10114545645360
effective search space used: 10114545645360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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