Clone Name | rbasd19e22 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 147 bits (74), Expect = 5e-32 Identities = 131/150 (87%) Strand = Plus / Minus Query: 214 tcgtcgtctctcctgtcgatgaagctcaggaggaacccgctcacgattctcctggcgatt 273 |||| |||||| ||||| |||||||||| |||||| ||||| ||||||||||||||||| Sbjct: 24976995 tcgttgtctctgctgtcaatgaagctcaagaggaagccgctgacgattctcctggcgatg 24976936 Query: 274 gggttgggtatgtggcggcacagccgaccgtccacgtaagcgacgacgccggaagctgcg 333 |||||||||||||||||||| ||||| ||||| ||||| ||||| | |||||| | ||| Sbjct: 24976935 gggttgggtatgtggcggcagagccggccgtcgacgtaggcgaccatgccggagacggcg 24976876 Query: 334 aacctcccaacggtccacagcctgctccgc 363 |||||||| ||| |||||| |||||||||| Sbjct: 24976875 aacctccccacgctccacaccctgctccgc 24976846 Score = 119 bits (60), Expect = 1e-23 Identities = 86/95 (90%) Strand = Plus / Minus Query: 451 atggccttggtggcctcccggtgcagcaggcgcaccgcgaagctcacaaacaggtgctcg 510 |||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||| Sbjct: 24976746 atggccttggtggcctcccggtgcagcacgcgcacggcgaagctcacgaacaggtgctct 24976687 Query: 511 cacagggtgagcaccgtcggcgcaatcttncactc 545 |||||||||||||||||||||||| | ||||| Sbjct: 24976686 gcgagggtgagcaccgtcggcgcaatcctccactc 24976652
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 147 bits (74), Expect = 5e-32 Identities = 131/150 (87%) Strand = Plus / Minus Query: 214 tcgtcgtctctcctgtcgatgaagctcaggaggaacccgctcacgattctcctggcgatt 273 |||| |||||| ||||| |||||||||| |||||| ||||| ||||||||||||||||| Sbjct: 24905201 tcgttgtctctgctgtcaatgaagctcaagaggaagccgctgacgattctcctggcgatg 24905142 Query: 274 gggttgggtatgtggcggcacagccgaccgtccacgtaagcgacgacgccggaagctgcg 333 |||||||||||||||||||| ||||| ||||| ||||| ||||| | |||||| | ||| Sbjct: 24905141 gggttgggtatgtggcggcagagccggccgtcgacgtaggcgaccatgccggagacggcg 24905082 Query: 334 aacctcccaacggtccacagcctgctccgc 363 |||||||| ||| |||||| |||||||||| Sbjct: 24905081 aacctccccacgctccacaccctgctccgc 24905052 Score = 119 bits (60), Expect = 1e-23 Identities = 86/95 (90%) Strand = Plus / Minus Query: 451 atggccttggtggcctcccggtgcagcaggcgcaccgcgaagctcacaaacaggtgctcg 510 |||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||| Sbjct: 24904952 atggccttggtggcctcccggtgcagcacgcgcacggcgaagctcacgaacaggtgctct 24904893 Query: 511 cacagggtgagcaccgtcggcgcaatcttncactc 545 |||||||||||||||||||||||| | ||||| Sbjct: 24904892 gcgagggtgagcaccgtcggcgcaatcctccactc 24904858
>emb|AL928754.2|CNS08CBR Oryza sativa chromosome 12, . BAC OSJNBa0056D07 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 146686 Score = 147 bits (74), Expect = 5e-32 Identities = 131/150 (87%) Strand = Plus / Plus Query: 214 tcgtcgtctctcctgtcgatgaagctcaggaggaacccgctcacgattctcctggcgatt 273 |||| |||||| ||||| |||||||||| |||||| ||||| ||||||||||||||||| Sbjct: 130172 tcgttgtctctgctgtcaatgaagctcaagaggaagccgctgacgattctcctggcgatg 130231 Query: 274 gggttgggtatgtggcggcacagccgaccgtccacgtaagcgacgacgccggaagctgcg 333 |||||||||||||||||||| ||||| ||||| ||||| ||||| | |||||| | ||| Sbjct: 130232 gggttgggtatgtggcggcagagccggccgtcgacgtaggcgaccatgccggagacggcg 130291 Query: 334 aacctcccaacggtccacagcctgctccgc 363 |||||||| ||| |||||| |||||||||| Sbjct: 130292 aacctccccacgctccacaccctgctccgc 130321 Score = 119 bits (60), Expect = 1e-23 Identities = 86/95 (90%) Strand = Plus / Plus Query: 451 atggccttggtggcctcccggtgcagcaggcgcaccgcgaagctcacaaacaggtgctcg 510 |||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||| Sbjct: 130421 atggccttggtggcctcccggtgcagcacgcgcacggcgaagctcacgaacaggtgctct 130480 Query: 511 cacagggtgagcaccgtcggcgcaatcttncactc 545 |||||||||||||||||||||||| | ||||| Sbjct: 130481 gcgagggtgagcaccgtcggcgcaatcctccactc 130515
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 48.1 bits (24), Expect = 0.034 Identities = 30/32 (93%) Strand = Plus / Plus Query: 175 gatgcattgcaggcggtgatcgccagcctgcc 206 |||||||||||| ||||||||| ||||||||| Sbjct: 3515839 gatgcattgcagccggtgatcgacagcctgcc 3515870
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 516 ggtgagcaccgtcggcgcaat 536 ||||||||||||||||||||| Sbjct: 1492913 ggtgagcaccgtcggcgcaat 1492933
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 516 ggtgagcaccgtcggcgcaat 536 ||||||||||||||||||||| Sbjct: 2827681 ggtgagcaccgtcggcgcaat 2827701
>gb|CP000141.1| Carboxydothermus hydrogenoformans Z-2901, complete genome Length = 2401520 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 496 acaaacaggtgctcgcacagggtg 519 ||||||||||| |||||||||||| Sbjct: 1134761 acaaacaggtgttcgcacagggtg 1134784
>ref|XM_616991.2| PREDICTED: Bos taurus similar to transient receptor potential cation channel, subfamily M, member 6 (LOC536844), partial mRNA Length = 2952 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 gatgaagctcaggaggaacc 250 |||||||||||||||||||| Sbjct: 1194 gatgaagctcaggaggaacc 1213
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 407 cgcctccagtgggtggtccc 426 |||||||||||||||||||| Sbjct: 489461 cgcctccagtgggtggtccc 489442
>ref|XM_748660.1| Aspergillus fumigatus Af293 hypothetical protein (Afu5g08840) partial mRNA Length = 1887 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 487 gcgaagctcacaaacaggtg 506 |||||||||||||||||||| Sbjct: 890 gcgaagctcacaaacaggtg 909
>emb|AL135921.5| Human DNA sequence from clone RP4-682C13 on chromosome Xq23-24, complete sequence Length = 10610 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 tatagaaagaaggaaaattc 44 |||||||||||||||||||| Sbjct: 1087 tatagaaagaaggaaaattc 1068
>emb|AJ297786.2|RGR297786 Ruta graveolens mRNA for putative acridone synthase (acs3 gene) Length = 1435 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 544 tcaggctcatttcgcagacggcgc 567 |||||||| ||||||||||||||| Sbjct: 680 tcaggctcttttcgcagacggcgc 703
>emb|AJ297787.1|RGR297787 Ruta graveolens mRNA for putative acridone synthase (acs4 gene) Length = 1406 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 544 tcaggctcatttcgcagacggcgc 567 |||||||| ||||||||||||||| Sbjct: 677 tcaggctcttttcgcagacggcgc 700
>emb|BX465851.5| Zebrafish DNA sequence from clone CH211-215H21 in linkage group 6, complete sequence Length = 145469 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 aattccaaatttcaggccaa 59 |||||||||||||||||||| Sbjct: 19719 aattccaaatttcaggccaa 19738
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 499 aacaggtgctcgcacagggt 518 |||||||||||||||||||| Sbjct: 5908041 aacaggtgctcgcacagggt 5908022
>gb|AC121765.2| Homo sapiens chromosome 3 clone RP11-767D18, complete sequence Length = 194455 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 30 aaagaaggaaaattccaaatttca 53 |||||| ||||||||||||||||| Sbjct: 17690 aaagaaagaaaattccaaatttca 17667
>emb|BX322661.17| Zebrafish DNA sequence from clone RP71-78H1 in linkage group 9, complete sequence Length = 146527 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tgactatagaaagaaggaaa 40 |||||||||||||||||||| Sbjct: 77294 tgactatagaaagaaggaaa 77275
>emb|AL929549.16| Zebrafish DNA sequence from clone CH211-149L22 in linkage group 5, complete sequence Length = 146059 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 aattccaaatttcaggccaa 59 |||||||||||||||||||| Sbjct: 5487 aattccaaatttcaggccaa 5468
>emb|BX324136.11| Zebrafish DNA sequence from clone DKEY-31C13 in linkage group 10, complete sequence Length = 255306 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 gggccaaaactgttgtacaa 141 |||||||||||||||||||| Sbjct: 75094 gggccaaaactgttgtacaa 75075
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 471 gtgcagcaggcgcaccgcga 490 |||||||||||||||||||| Sbjct: 1540167 gtgcagcaggcgcaccgcga 1540186
>gb|AC159259.2| Mus musculus BAC clone RP24-83G17 from chromosome 3, complete sequence Length = 191517 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 aattccaaatttcaggccaa 59 |||||||||||||||||||| Sbjct: 94702 aattccaaatttcaggccaa 94721
>emb|BX005328.9| Zebrafish DNA sequence from clone DKEY-63D15 in linkage group 8, complete sequence Length = 272840 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 aattccaaatttcaggccaa 59 |||||||||||||||||||| Sbjct: 269407 aattccaaatttcaggccaa 269388
>gb|AC117517.7| Homo sapiens X BAC RP13-356M24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 121628 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 aaaattccaaatttcaggcc 57 |||||||||||||||||||| Sbjct: 61260 aaaattccaaatttcaggcc 61241
>gb|AC134025.2| Homo sapiens 3 BAC RP11-231I13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 183111 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 30 aaagaaggaaaattccaaatttca 53 |||||| ||||||||||||||||| Sbjct: 140087 aaagaaagaaaattccaaatttca 140110
>emb|Z34088.1|RGACRSYN R.graveolens (AIG) mRNA for acridone synthase Length = 1398 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 544 tcaggctcatttcgcagacggcgc 567 |||||||| ||||||||||||||| Sbjct: 687 tcaggctcttttcgcagacggcgc 710
>emb|CR388132.9| Zebrafish DNA sequence from clone DKEY-23A23 in linkage group 4, complete sequence Length = 206525 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 aattccaaatttcaggccaa 59 |||||||||||||||||||| Sbjct: 5735 aattccaaatttcaggccaa 5716
>emb|BX649380.7| Zebrafish DNA sequence from clone CH211-87P6 in linkage group 4, complete sequence Length = 172167 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 aattccaaatttcaggccaa 59 |||||||||||||||||||| Sbjct: 113043 aattccaaatttcaggccaa 113024 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 aattccaaatttcaggccaa 59 |||||||||||||||||||| Sbjct: 109231 aattccaaatttcaggccaa 109212
>emb|CR377223.6| Zebrafish DNA sequence from clone DKEY-12O15 in linkage group 18, complete sequence Length = 211465 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 aattccaaatttcaggccaa 59 |||||||||||||||||||| Sbjct: 201227 aattccaaatttcaggccaa 201246 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 aattccaaatttcaggccaa 59 |||||||||||||||||||| Sbjct: 197834 aattccaaatttcaggccaa 197853
>emb|AL928707.5| Zebrafish DNA sequence from clone CH211-207M2 in linkage group 21, complete sequence Length = 206304 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 aattccaaatttcaggccaa 59 |||||||||||||||||||| Sbjct: 140371 aattccaaatttcaggccaa 140390
>emb|BX088721.5| Zebrafish DNA sequence from clone DKEY-14M2 in linkage group 14, complete sequence Length = 231054 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 aattccaaatttcaggccaa 59 |||||||||||||||||||| Sbjct: 162501 aattccaaatttcaggccaa 162520
>gb|AF069555.1|AF069555 Meleagris gallopavo G protein-coupled receptor p2y3 (p2y3) gene, complete cds Length = 1074 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 caccttcgtcttcgcctcca 414 |||||||||||||||||||| Sbjct: 468 caccttcgtcttcgcctcca 487
>gb|AE015925.1| Chlamydophila caviae GPIC, complete genome Length = 1173390 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 atgcgttcttcctgtaattg 22 |||||||||||||||||||| Sbjct: 443958 atgcgttcttcctgtaattg 443977 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,032,155 Number of Sequences: 3902068 Number of extensions: 4032155 Number of successful extensions: 74663 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74316 Number of HSP's gapped (non-prelim): 344 length of query: 613 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 590 effective length of database: 17,143,297,704 effective search space: 10114545645360 effective search space used: 10114545645360 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)