Clone Name | rbasd19e21 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 58.0 bits (29), Expect = 1e-05 Identities = 71/85 (83%) Strand = Plus / Plus Query: 10 aactcctccgggtcgtcaggccagcttgtcgggtccctgccaatggcccatgcattcaca 69 ||||||||||| || || |||||||| | ||| || || || || ||||||||||| || Sbjct: 19890122 aactcctccggctcatcgggccagctcgccggatctctaccgatcgcccatgcattgacg 19890181 Query: 70 tagatccgtgtcttggcgggcacat 94 |||||||| |||||||| ||||||| Sbjct: 19890182 tagatccgcgtcttggccggcacat 19890206
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 58.0 bits (29), Expect = 1e-05 Identities = 71/85 (83%) Strand = Plus / Plus Query: 10 aactcctccgggtcgtcaggccagcttgtcgggtccctgccaatggcccatgcattcaca 69 ||||||||||| || || |||||||| | ||| || || || || ||||||||||| || Sbjct: 19816336 aactcctccggctcatcgggccagctcgccggatctctaccgatcgcccatgcattgacg 19816395 Query: 70 tagatccgtgtcttggcgggcacat 94 |||||||| |||||||| ||||||| Sbjct: 19816396 tagatccgcgtcttggccggcacat 19816420
>emb|AL731888.5|CNS08C8S Oryza sativa chromosome 12, . BAC OJ1118_C12 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 165433 Score = 58.0 bits (29), Expect = 1e-05 Identities = 71/85 (83%) Strand = Plus / Minus Query: 10 aactcctccgggtcgtcaggccagcttgtcgggtccctgccaatggcccatgcattcaca 69 ||||||||||| || || |||||||| | ||| || || || || ||||||||||| || Sbjct: 137138 aactcctccggctcatcgggccagctcgccggatctctaccgatcgcccatgcattgacg 137079 Query: 70 tagatccgtgtcttggcgggcacat 94 |||||||| |||||||| ||||||| Sbjct: 137078 tagatccgcgtcttggccggcacat 137054
>ref|NM_185174.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1584 Score = 50.1 bits (25), Expect = 0.003 Identities = 25/25 (100%) Strand = Plus / Minus Query: 170 gtctccttcaccaccatcttgaggt 194 ||||||||||||||||||||||||| Sbjct: 1157 gtctccttcaccaccatcttgaggt 1133
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 50.1 bits (25), Expect = 0.003 Identities = 25/25 (100%) Strand = Plus / Minus Query: 170 gtctccttcaccaccatcttgaggt 194 ||||||||||||||||||||||||| Sbjct: 35476677 gtctccttcaccaccatcttgaggt 35476653 Score = 42.1 bits (21), Expect = 0.63 Identities = 24/25 (96%) Strand = Plus / Minus Query: 170 gtctccttcaccaccatcttgaggt 194 |||||||||||||||||||| |||| Sbjct: 20365046 gtctccttcaccaccatcttcaggt 20365022
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 50.1 bits (25), Expect = 0.003 Identities = 25/25 (100%) Strand = Plus / Minus Query: 170 gtctccttcaccaccatcttgaggt 194 ||||||||||||||||||||||||| Sbjct: 35566749 gtctccttcaccaccatcttgaggt 35566725 Score = 42.1 bits (21), Expect = 0.63 Identities = 24/25 (96%) Strand = Plus / Minus Query: 170 gtctccttcaccaccatcttgaggt 194 |||||||||||||||||||| |||| Sbjct: 20358075 gtctccttcaccaccatcttcaggt 20358051
>gb|AC092559.4| Oryza sativa chromosome 3 BAC OSJNBb0096M04 genomic sequence, complete sequence Length = 133846 Score = 50.1 bits (25), Expect = 0.003 Identities = 25/25 (100%) Strand = Plus / Plus Query: 170 gtctccttcaccaccatcttgaggt 194 ||||||||||||||||||||||||| Sbjct: 10949 gtctccttcaccaccatcttgaggt 10973
>gb|AC096688.4| Oryza sativa chromosome 3 BAC OSJNBa0015N08 genomic sequence, complete sequence Length = 145290 Score = 50.1 bits (25), Expect = 0.003 Identities = 25/25 (100%) Strand = Plus / Minus Query: 170 gtctccttcaccaccatcttgaggt 194 ||||||||||||||||||||||||| Sbjct: 9640 gtctccttcaccaccatcttgaggt 9616
>emb|BX248334.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 1/14 Length = 343050 Score = 44.1 bits (22), Expect = 0.16 Identities = 22/22 (100%) Strand = Plus / Minus Query: 135 cagcaacatcggcgctggtggg 156 |||||||||||||||||||||| Sbjct: 335033 cagcaacatcggcgctggtggg 335012
>ref|NM_184768.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1050 Score = 42.1 bits (21), Expect = 0.63 Identities = 24/25 (96%) Strand = Plus / Minus Query: 170 gtctccttcaccaccatcttgaggt 194 |||||||||||||||||||| |||| Sbjct: 674 gtctccttcaccaccatcttcaggt 650
>gb|AC084319.5|AC084319 Oryza sativa chromosome 3 BAC OSJNBa0004B24 genomic sequence, complete sequence Length = 152883 Score = 42.1 bits (21), Expect = 0.63 Identities = 24/25 (96%) Strand = Plus / Minus Query: 170 gtctccttcaccaccatcttgaggt 194 |||||||||||||||||||| |||| Sbjct: 9346 gtctccttcaccaccatcttcaggt 9322
>ref|XM_390281.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG10105.1) partial mRNA Length = 2025 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 ctccttcaccaccatcttga 191 |||||||||||||||||||| Sbjct: 1969 ctccttcaccaccatcttga 1950
>emb|AL356305.11| Human DNA sequence from clone RP11-109K20 on chromosome 13, complete sequence Length = 132436 Score = 40.1 bits (20), Expect = 2.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 169 tgtctccttcaccaccatcttgag 192 ||||||| |||||||||||||||| Sbjct: 61797 tgtctccatcaccaccatcttgag 61774
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 cggcgctggtgggtgtagcc 163 |||||||||||||||||||| Sbjct: 20469027 cggcgctggtgggtgtagcc 20469008
>dbj|AP005682.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1531_B07 Length = 115245 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 cggcgctggtgggtgtagcc 163 |||||||||||||||||||| Sbjct: 97166 cggcgctggtgggtgtagcc 97147
>gb|AY870915.1| Lobelia inflata isolate cy450P2C2 cytochrome P450 gene, partial cds Length = 356 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 caatggcccatgcattcaca 69 |||||||||||||||||||| Sbjct: 111 caatggcccatgcattcaca 130
>gb|AF029858.1|AF029858 Sorghum bicolor cytochrome P450 CYP71E1 (CYP71E1) mRNA, complete cds Length = 1929 Score = 40.1 bits (20), Expect = 2.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 28 ggccagcttgtcgggtccctgccaatggccca 59 |||||||| | |||||||||||| |||||||| Sbjct: 1381 ggccagctcgccgggtccctgccgatggccca 1350
>ref|NM_112904.2| Arabidopsis thaliana CYP705A22; heme binding / iron ion binding / monooxygenase/ oxygen binding AT3G20130 (CYP705A22) mRNA, complete cds Length = 1824 Score = 38.2 bits (19), Expect = 9.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 1 tctggtttaaactcctccgggtc 23 ||||||||||||||||| ||||| Sbjct: 1321 tctggtttaaactcctcagggtc 1299
>emb|AL713960.17| Mouse DNA sequence from clone RP23-448I9 on chromosome 11 Contains the 5' end of the Car10 gene for carbonic anhydrase 10 and one CpG island, complete sequence Length = 203449 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 98 aacccccaatttggatgtc 116 ||||||||||||||||||| Sbjct: 13761 aacccccaatttggatgtc 13743
>gb|AC154607.2| Mus musculus BAC clone RP23-331D17 from chromosome 16, complete sequence Length = 202496 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 44 ccctgccaatggcccatgc 62 ||||||||||||||||||| Sbjct: 123304 ccctgccaatggcccatgc 123322
>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome Length = 2696255 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 130 ctcggcagcaacatcggcg 148 ||||||||||||||||||| Sbjct: 523898 ctcggcagcaacatcggcg 523880
>gb|AC084702.4| Homo sapiens chromosome 18, clone RP11-1133K3, complete sequence Length = 141820 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 169 tgtctccttcaccaccatc 187 ||||||||||||||||||| Sbjct: 53764 tgtctccttcaccaccatc 53746
>gb|BT006472.1| Arabidopsis thaliana At3g20130 gene, complete cds Length = 1548 Score = 38.2 bits (19), Expect = 9.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 1 tctggtttaaactcctccgggtc 23 ||||||||||||||||| ||||| Sbjct: 1268 tctggtttaaactcctcagggtc 1246
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 81 cttggcgggcacatgataa 99 ||||||||||||||||||| Sbjct: 5931074 cttggcgggcacatgataa 5931056
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 89 gcacatgataacccccaat 107 ||||||||||||||||||| Sbjct: 18033032 gcacatgataacccccaat 18033050
>dbj|AP004741.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0024N18 Length = 128739 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 81 cttggcgggcacatgataa 99 ||||||||||||||||||| Sbjct: 52726 cttggcgggcacatgataa 52708
>dbj|AP003525.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0537F07 Length = 147724 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 81 cttggcgggcacatgataa 99 ||||||||||||||||||| Sbjct: 131849 cttggcgggcacatgataa 131831
>dbj|AB122088.1| Oryza sativa (japonica cultivar-group) OPDAR1 gene for 12-oxo-phytodienoic acid reductase, complete cds Length = 2492 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 81 cttggcgggcacatgataa 99 ||||||||||||||||||| Sbjct: 378 cttggcgggcacatgataa 396
>dbj|AP005285.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1003_F04 Length = 139563 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 89 gcacatgataacccccaat 107 ||||||||||||||||||| Sbjct: 94626 gcacatgataacccccaat 94644
>dbj|AP000383.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MAL21 Length = 83253 Score = 38.2 bits (19), Expect = 9.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 1 tctggtttaaactcctccgggtc 23 ||||||||||||||||| ||||| Sbjct: 48551 tctggtttaaactcctcagggtc 48529
>emb|AL731692.8| Mouse DNA sequence from clone RP23-245M18 on chromosome X, complete sequence Length = 169309 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 173 tccttcaccaccatcttga 191 ||||||||||||||||||| Sbjct: 113642 tccttcaccaccatcttga 113660
>gb|CP000036.1| Shigella boydii Sb227, complete genome Length = 4519823 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 135 cagcaacatcggcgctggt 153 ||||||||||||||||||| Sbjct: 3426051 cagcaacatcggcgctggt 3426069
>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome Length = 2695903 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 130 ctcggcagcaacatcggcg 148 ||||||||||||||||||| Sbjct: 1096905 ctcggcagcaacatcggcg 1096923
>dbj|D16436.1|SYOPACL Synechococcus sp. DNA for PacL, complete cds Length = 3796 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 130 ctcggcagcaacatcggcg 148 ||||||||||||||||||| Sbjct: 2979 ctcggcagcaacatcggcg 2997 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,202,588 Number of Sequences: 3902068 Number of extensions: 1202588 Number of successful extensions: 75666 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75379 Number of HSP's gapped (non-prelim): 287 length of query: 199 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 177 effective length of database: 17,147,199,772 effective search space: 3035054359644 effective search space used: 3035054359644 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)