ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd19e21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 58 1e-05
2gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 58 1e-05
3emb|AL731888.5|CNS08C8S Oryza sativa chromosome 12, . BAC OJ1118... 58 1e-05
4ref|NM_185174.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.003
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 50 0.003
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.003
7gb|AC092559.4| Oryza sativa chromosome 3 BAC OSJNBb0096M04 genom... 50 0.003
8gb|AC096688.4| Oryza sativa chromosome 3 BAC OSJNBa0015N08 genom... 50 0.003
9emb|BX248334.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 44 0.16
10ref|NM_184768.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.63
11gb|AC084319.5|AC084319 Oryza sativa chromosome 3 BAC OSJNBa0004B... 42 0.63
12ref|XM_390281.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 40 2.5
13emb|AL356305.11| Human DNA sequence from clone RP11-109K20 on ch... 40 2.5
14dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.5
15dbj|AP005682.2| Oryza sativa (japonica cultivar-group) genomic D... 40 2.5
16gb|AY870915.1| Lobelia inflata isolate cy450P2C2 cytochrome P450... 40 2.5
17gb|AF029858.1|AF029858 Sorghum bicolor cytochrome P450 CYP71E1 (... 40 2.5
18ref|NM_112904.2| Arabidopsis thaliana CYP705A22; heme binding / ... 38 9.9
19emb|AL713960.17| Mouse DNA sequence from clone RP23-448I9 on chr... 38 9.9
20gb|AC154607.2| Mus musculus BAC clone RP23-331D17 from chromosom... 38 9.9
21dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete g... 38 9.9
22gb|AC084702.4| Homo sapiens chromosome 18, clone RP11-1133K3, co... 38 9.9
23gb|BT006472.1| Arabidopsis thaliana At3g20130 gene, complete cds 38 9.9
24dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.9
25dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.9
26dbj|AP004741.3| Oryza sativa (japonica cultivar-group) genomic D... 38 9.9
27dbj|AP003525.2| Oryza sativa (japonica cultivar-group) genomic D... 38 9.9
28dbj|AB122088.1| Oryza sativa (japonica cultivar-group) OPDAR1 g... 38 9.9
29dbj|AP005285.2| Oryza sativa (japonica cultivar-group) genomic D... 38 9.9
30dbj|AP000383.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 38 9.9
31emb|AL731692.8| Mouse DNA sequence from clone RP23-245M18 on chr... 38 9.9
32gb|CP000036.1| Shigella boydii Sb227, complete genome 38 9.9
33gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome 38 9.9
34dbj|D16436.1|SYOPACL Synechococcus sp. DNA for PacL, complete cds 38 9.9

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 71/85 (83%)
 Strand = Plus / Plus

                                                                            
Query: 10       aactcctccgggtcgtcaggccagcttgtcgggtccctgccaatggcccatgcattcaca 69
                ||||||||||| || || |||||||| | ||| || || || || ||||||||||| || 
Sbjct: 19890122 aactcctccggctcatcgggccagctcgccggatctctaccgatcgcccatgcattgacg 19890181

                                         
Query: 70       tagatccgtgtcttggcgggcacat 94
                |||||||| |||||||| |||||||
Sbjct: 19890182 tagatccgcgtcttggccggcacat 19890206



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 71/85 (83%)
 Strand = Plus / Plus

                                                                            
Query: 10       aactcctccgggtcgtcaggccagcttgtcgggtccctgccaatggcccatgcattcaca 69
                ||||||||||| || || |||||||| | ||| || || || || ||||||||||| || 
Sbjct: 19816336 aactcctccggctcatcgggccagctcgccggatctctaccgatcgcccatgcattgacg 19816395

                                         
Query: 70       tagatccgtgtcttggcgggcacat 94
                |||||||| |||||||| |||||||
Sbjct: 19816396 tagatccgcgtcttggccggcacat 19816420



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>emb|AL731888.5|CNS08C8S Oryza sativa chromosome 12, . BAC OJ1118_C12 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 165433

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 71/85 (83%)
 Strand = Plus / Minus

                                                                          
Query: 10     aactcctccgggtcgtcaggccagcttgtcgggtccctgccaatggcccatgcattcaca 69
              ||||||||||| || || |||||||| | ||| || || || || ||||||||||| || 
Sbjct: 137138 aactcctccggctcatcgggccagctcgccggatctctaccgatcgcccatgcattgacg 137079

                                       
Query: 70     tagatccgtgtcttggcgggcacat 94
              |||||||| |||||||| |||||||
Sbjct: 137078 tagatccgcgtcttggccggcacat 137054



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>ref|NM_185174.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1584

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 170  gtctccttcaccaccatcttgaggt 194
            |||||||||||||||||||||||||
Sbjct: 1157 gtctccttcaccaccatcttgaggt 1133



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                         
Query: 170      gtctccttcaccaccatcttgaggt 194
                |||||||||||||||||||||||||
Sbjct: 35476677 gtctccttcaccaccatcttgaggt 35476653



 Score = 42.1 bits (21), Expect = 0.63
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 170      gtctccttcaccaccatcttgaggt 194
                |||||||||||||||||||| ||||
Sbjct: 20365046 gtctccttcaccaccatcttcaggt 20365022



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                         
Query: 170      gtctccttcaccaccatcttgaggt 194
                |||||||||||||||||||||||||
Sbjct: 35566749 gtctccttcaccaccatcttgaggt 35566725



 Score = 42.1 bits (21), Expect = 0.63
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 170      gtctccttcaccaccatcttgaggt 194
                |||||||||||||||||||| ||||
Sbjct: 20358075 gtctccttcaccaccatcttcaggt 20358051



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>gb|AC092559.4| Oryza sativa chromosome 3 BAC OSJNBb0096M04 genomic sequence, complete
             sequence
          Length = 133846

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                      
Query: 170   gtctccttcaccaccatcttgaggt 194
             |||||||||||||||||||||||||
Sbjct: 10949 gtctccttcaccaccatcttgaggt 10973



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>gb|AC096688.4| Oryza sativa chromosome 3 BAC OSJNBa0015N08 genomic sequence,
            complete sequence
          Length = 145290

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 170  gtctccttcaccaccatcttgaggt 194
            |||||||||||||||||||||||||
Sbjct: 9640 gtctccttcaccaccatcttgaggt 9616



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>emb|BX248334.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 1/14
          Length = 343050

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 135    cagcaacatcggcgctggtggg 156
              ||||||||||||||||||||||
Sbjct: 335033 cagcaacatcggcgctggtggg 335012



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>ref|NM_184768.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1050

 Score = 42.1 bits (21), Expect = 0.63
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 170 gtctccttcaccaccatcttgaggt 194
           |||||||||||||||||||| ||||
Sbjct: 674 gtctccttcaccaccatcttcaggt 650



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>gb|AC084319.5|AC084319 Oryza sativa chromosome 3 BAC OSJNBa0004B24 genomic sequence,
            complete sequence
          Length = 152883

 Score = 42.1 bits (21), Expect = 0.63
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 170  gtctccttcaccaccatcttgaggt 194
            |||||||||||||||||||| ||||
Sbjct: 9346 gtctccttcaccaccatcttcaggt 9322



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>ref|XM_390281.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG10105.1)
            partial mRNA
          Length = 2025

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 172  ctccttcaccaccatcttga 191
            ||||||||||||||||||||
Sbjct: 1969 ctccttcaccaccatcttga 1950



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>emb|AL356305.11| Human DNA sequence from clone RP11-109K20 on chromosome 13, complete
             sequence
          Length = 132436

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 169   tgtctccttcaccaccatcttgag 192
             ||||||| ||||||||||||||||
Sbjct: 61797 tgtctccatcaccaccatcttgag 61774



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 144      cggcgctggtgggtgtagcc 163
                ||||||||||||||||||||
Sbjct: 20469027 cggcgctggtgggtgtagcc 20469008



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>dbj|AP005682.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1531_B07
          Length = 115245

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   cggcgctggtgggtgtagcc 163
             ||||||||||||||||||||
Sbjct: 97166 cggcgctggtgggtgtagcc 97147



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>gb|AY870915.1| Lobelia inflata isolate cy450P2C2 cytochrome P450 gene, partial cds
          Length = 356

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 50  caatggcccatgcattcaca 69
           ||||||||||||||||||||
Sbjct: 111 caatggcccatgcattcaca 130



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>gb|AF029858.1|AF029858 Sorghum bicolor cytochrome P450 CYP71E1 (CYP71E1) mRNA, complete cds
          Length = 1929

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 28   ggccagcttgtcgggtccctgccaatggccca 59
            |||||||| | |||||||||||| ||||||||
Sbjct: 1381 ggccagctcgccgggtccctgccgatggccca 1350



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>ref|NM_112904.2| Arabidopsis thaliana CYP705A22; heme binding / iron ion binding /
            monooxygenase/ oxygen binding AT3G20130 (CYP705A22) mRNA,
            complete cds
          Length = 1824

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 1    tctggtttaaactcctccgggtc 23
            ||||||||||||||||| |||||
Sbjct: 1321 tctggtttaaactcctcagggtc 1299



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>emb|AL713960.17| Mouse DNA sequence from clone RP23-448I9 on chromosome 11 Contains the
             5' end of the Car10 gene for carbonic anhydrase 10 and one
             CpG island, complete sequence
          Length = 203449

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 98    aacccccaatttggatgtc 116
             |||||||||||||||||||
Sbjct: 13761 aacccccaatttggatgtc 13743



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>gb|AC154607.2| Mus musculus BAC clone RP23-331D17 from chromosome 16, complete sequence
          Length = 202496

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 44     ccctgccaatggcccatgc 62
              |||||||||||||||||||
Sbjct: 123304 ccctgccaatggcccatgc 123322



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>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome
          Length = 2696255

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 130    ctcggcagcaacatcggcg 148
              |||||||||||||||||||
Sbjct: 523898 ctcggcagcaacatcggcg 523880



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>gb|AC084702.4| Homo sapiens chromosome 18, clone RP11-1133K3, complete sequence
          Length = 141820

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 169   tgtctccttcaccaccatc 187
             |||||||||||||||||||
Sbjct: 53764 tgtctccttcaccaccatc 53746



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>gb|BT006472.1| Arabidopsis thaliana At3g20130 gene, complete cds
          Length = 1548

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 1    tctggtttaaactcctccgggtc 23
            ||||||||||||||||| |||||
Sbjct: 1268 tctggtttaaactcctcagggtc 1246



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 81      cttggcgggcacatgataa 99
               |||||||||||||||||||
Sbjct: 5931074 cttggcgggcacatgataa 5931056



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 89       gcacatgataacccccaat 107
                |||||||||||||||||||
Sbjct: 18033032 gcacatgataacccccaat 18033050



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>dbj|AP004741.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBb0024N18
          Length = 128739

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 81    cttggcgggcacatgataa 99
             |||||||||||||||||||
Sbjct: 52726 cttggcgggcacatgataa 52708



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>dbj|AP003525.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0537F07
          Length = 147724

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 81     cttggcgggcacatgataa 99
              |||||||||||||||||||
Sbjct: 131849 cttggcgggcacatgataa 131831



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>dbj|AB122088.1| Oryza sativa (japonica cultivar-group) OPDAR1  gene for
           12-oxo-phytodienoic acid reductase, complete cds
          Length = 2492

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 81  cttggcgggcacatgataa 99
           |||||||||||||||||||
Sbjct: 378 cttggcgggcacatgataa 396



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>dbj|AP005285.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1003_F04
          Length = 139563

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 89    gcacatgataacccccaat 107
             |||||||||||||||||||
Sbjct: 94626 gcacatgataacccccaat 94644



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>dbj|AP000383.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MAL21
          Length = 83253

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 1     tctggtttaaactcctccgggtc 23
             ||||||||||||||||| |||||
Sbjct: 48551 tctggtttaaactcctcagggtc 48529



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>emb|AL731692.8| Mouse DNA sequence from clone RP23-245M18 on chromosome X, complete
              sequence
          Length = 169309

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 173    tccttcaccaccatcttga 191
              |||||||||||||||||||
Sbjct: 113642 tccttcaccaccatcttga 113660



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>gb|CP000036.1| Shigella boydii Sb227, complete genome
          Length = 4519823

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 135     cagcaacatcggcgctggt 153
               |||||||||||||||||||
Sbjct: 3426051 cagcaacatcggcgctggt 3426069



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>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome
          Length = 2695903

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 130     ctcggcagcaacatcggcg 148
               |||||||||||||||||||
Sbjct: 1096905 ctcggcagcaacatcggcg 1096923



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>dbj|D16436.1|SYOPACL Synechococcus sp. DNA for PacL, complete cds
          Length = 3796

 Score = 38.2 bits (19), Expect = 9.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 130  ctcggcagcaacatcggcg 148
            |||||||||||||||||||
Sbjct: 2979 ctcggcagcaacatcggcg 2997


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,202,588
Number of Sequences: 3902068
Number of extensions: 1202588
Number of successful extensions: 75666
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75379
Number of HSP's gapped (non-prelim): 287
length of query: 199
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 177
effective length of database: 17,147,199,772
effective search space: 3035054359644
effective search space used: 3035054359644
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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