ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd19e17 |
|---|---|
| Clone Library Name | barley_pub |
>VCLA_GOSHI (P09799) Vicilin GC72-A precursor (Alpha-globulin A)| Length = 605 Score = 42.7 bits (99), Expect = 0.001 Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 2/95 (2%) Frame = -3 Query: 683 DPARKEQ-CVQQCMRYGLNLXXXXXXXVIERPHAEEVEVDDQSNDSCDHKCQ-HHKVPAR 510 DP R+ Q C Q C + L E+ ++ + D+ C +CQ + P R Sbjct: 79 DPQRRYQDCRQHCQQEERRLRPHCEQSCREQYEKQQQQQPDKQFKECQQRCQWQEQRPER 138 Query: 509 KKQCVDECHRREHHHPSRAACERKCSHWRDPTRKE 405 K+QCV EC + P + E K WR+ +E Sbjct: 139 KQQCVKECREQYQEDPWKGERENK---WREEEEEE 170 Score = 30.8 bits (68), Expect = 4.4 Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 7/61 (11%) Frame = -3 Query: 548 CDHKCQHHKVPAR---KKQCVDECHRREHHHPSRA--ACERKCSHWRD--PTRKERCVQT 390 C CQ + R ++ C ++ +++ P + C+++C W++ P RK++CV+ Sbjct: 87 CRQHCQQEERRLRPHCEQSCREQYEKQQQQQPDKQFKECQQRCQ-WQEQRPERKQQCVKE 145 Query: 389 C 387 C Sbjct: 146 C 146
>VCLB_GOSHI (P09801) Vicilin C72 precursor (Alpha-globulin B)| Length = 588 Score = 39.7 bits (91), Expect = 0.010 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 1/83 (1%) Frame = -3 Query: 683 DPARK-EQCVQQCMRYGLNLXXXXXXXVIERPHAEEVEVDDQSNDSCDHKCQHHKVPARK 507 DP R+ E+C Q+C + ++R E+ + Q + H Q + P RK Sbjct: 82 DPQRRYEECQQECRQQEERQRPQCQQRCLKRFEQEQQQSQRQFQECQQHCHQQEQRPERK 141 Query: 506 KQCVDECHRREHHHPSRAACERK 438 +QCV EC R +P R E + Sbjct: 142 QQCVRECRERYQENPWRREREEE 164 Score = 34.7 bits (78), Expect = 0.31 Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 6/114 (5%) Frame = -3 Query: 710 CERKCSHWRDPARKEQCVQQCMRYGLNLXXXXXXXVIERPHAEEVEVDDQSNDSCDHKCQ 531 C R+C W +KEQ QQC + RP E + + C +C+ Sbjct: 44 CRRRCE-WDTRGQKEQ--QQCEESCKSQYGEKDQQQRHRP-----EDPQRRYEECQQECR 95 Query: 530 HHKVPARKKQCVDECHRREHHHPSRAA-----CERKCSHWRD-PTRKERCVQTC 387 + ++ QC C +R ++ C++ C P RK++CV+ C Sbjct: 96 QQE-ERQRPQCQQRCLKRFEQEQQQSQRQFQECQQHCHQQEQRPERKQQCVREC 148
>MST2_DROHY (Q08696) Axoneme-associated protein mst101(2)| Length = 1391 Score = 38.5 bits (88), Expect = 0.021 Identities = 22/118 (18%), Positives = 49/118 (41%), Gaps = 8/118 (6%) Frame = -3 Query: 710 CERKCSHWRDPARKEQCVQQCMRYGLNLXXXXXXXVIERPHAEEVEVDDQSND------- 552 CE + ++ A K+QC ++ + E+ AE+ + ++++ Sbjct: 1064 CEERAKKLKEAAEKKQCEERAKK--------------EKEAAEKKQCEERAKKLKEAAEK 1109 Query: 551 -SCDHKCQHHKVPARKKQCVDECHRREHHHPSRAACERKCSHWRDPTRKERCVQTCMR 381 C+ + + K A KK+C +E +RE + C ++ T K++C + + Sbjct: 1110 KQCEERAKKEKEAAEKKRC-EEAAKREKEAAEKKKCAEAAKKEKEATEKQKCAEAAKK 1166 Score = 37.0 bits (84), Expect = 0.062 Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 12/120 (10%) Frame = -3 Query: 722 SRASCERKCSHWRDPARKEQCVQ------------QCMRYGLNLXXXXXXXVIERPHAEE 579 ++ CE + ++ A K+QC + QC L E + Sbjct: 996 TKKKCEERAKKQKEAAEKKQCEERAKKLKEAAEQKQCEERAKKLKEAAEKKQCEERAKKL 1055 Query: 578 VEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRAACERKCSHWRDPTRKERC 399 E +Q C+ + + K A KKQC +E ++E + CE + ++ K++C Sbjct: 1056 KEAAEQK--QCEERAKKLKEAAEKKQC-EERAKKEKEAAEKKQCEERAKKLKEAAEKKQC 1112 Score = 32.7 bits (73), Expect = 1.2 Identities = 21/113 (18%), Positives = 42/113 (37%) Frame = -3 Query: 719 RASCERKCSHWRDPARKEQCVQQCMRYGLNLXXXXXXXVIERPHAEEVEVDDQSNDSCDH 540 + CE + ++ A K+QC ++ + E+ AE+ C+ Sbjct: 1093 KKQCEERAKKLKEAAEKKQCEERAKK--------------EKEAAEK--------KRCEE 1130 Query: 539 KCQHHKVPARKKQCVDECHRREHHHPSRAACERKCSHWRDPTRKERCVQTCMR 381 + K A KK+C E ++E + C ++ K++C + R Sbjct: 1131 AAKREKEAAEKKKCA-EAAKKEKEATEKQKCAEAAKKEKEAAEKKKCAEAAKR 1182 Score = 31.6 bits (70), Expect = 2.6 Identities = 21/109 (19%), Positives = 42/109 (38%) Frame = -3 Query: 707 ERKCSHWRDPARKEQCVQQCMRYGLNLXXXXXXXVIERPHAEEVEVDDQSNDSCDHKCQH 528 ++KC + +K ++C + E +E E ++ C+ ++ Sbjct: 380 KKKCEEAANKEKKAAEKKKCEKAAKERKEAAEKKKCEEAAKKEKEAAERKK--CEELAKN 437 Query: 527 HKVPARKKQCVDECHRREHHHPSRAACERKCSHWRDPTRKERCVQTCMR 381 K A KK+C E ++E R CE + K++C +T + Sbjct: 438 IKKAAEKKKC-KEAAKKEKEAAERKKCEELAKKIKKAAEKKKCEETAKK 485 Score = 30.4 bits (67), Expect = 5.8 Identities = 20/113 (17%), Positives = 43/113 (38%) Frame = -3 Query: 719 RASCERKCSHWRDPARKEQCVQQCMRYGLNLXXXXXXXVIERPHAEEVEVDDQSNDSCDH 540 + CE+ ++ A K++C + + E+ + E ++ C+ Sbjct: 524 KKKCEKAAKKRKEAAEKKKCEKAAKKR----KEAAEKKKCEKSAKKRKEAAEKKK--CEK 577 Query: 539 KCQHHKVPARKKQCVDECHRREHHHPSRAACERKCSHWRDPTRKERCVQTCMR 381 + K A KK+C +E ++E R CE + K++C + + Sbjct: 578 AAKERKEAAEKKKC-EEAAKKEKEVAERKKCEELAKKIKKAAEKKKCKEAAKK 629
>LHX8_MOUSE (O35652) LIM/homeobox protein Lhx8 (LIM homeodomain Lhx7) (L3)| Length = 367 Score = 32.7 bits (73), Expect = 1.2 Identities = 17/59 (28%), Positives = 27/59 (45%) Frame = +3 Query: 27 SSCGKHT*QTNLLKEGKGTEFHGALF*ERHRQSCCYCKLLVFYSHAFAVIASKTYTRAY 203 S CG+H T+ ++ KG +H A F +C CK + FA++ K R + Sbjct: 158 SRCGRHIHSTDWVRRAKGNVYHLACF------ACFSCKRQLSTGEEFALVEEKVLCRVH 210
>VCL_THECC (Q43358) Vicilin precursor| Length = 525 Score = 32.3 bits (72), Expect = 1.5 Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 1/104 (0%) Frame = -3 Query: 710 CERKC-SHWRDPARKEQCVQQCMRYGLNLXXXXXXXVIERPHAEEVEVDDQSNDSCDHKC 534 C+R+C S + +EQC Q+C ER + E+ + Sbjct: 45 CQRRCESEATEEREQEQCEQRC----------------EREYKEQ------------QRQ 76 Query: 533 QHHKVPARKKQCVDECHRREHHHPSRAACERKCSHWRDPTRKER 402 Q ++ + +QC C ++ + C+RKC W +ER Sbjct: 77 QEEELQRQYQQCQGRCQEQQQGQREQQQCQRKC--WEQYKEQER 118
>MST1_DROHY (Q08695) Axoneme-associated protein mst101(1)| Length = 344 Score = 30.8 bits (68), Expect = 4.4 Identities = 18/116 (15%), Positives = 42/116 (36%), Gaps = 3/116 (2%) Frame = -3 Query: 719 RASCERKCSHWRDPARKEQCVQQCMRYGLNLXXXXXXXVIERPHAEEVEVDDQS---NDS 549 + C ++ A K++C + + ++ E+ +Q Sbjct: 138 KKKCAEAAKKEKEAAEKKKCAEAAKKEKEAAEKKKCAEAAQKKKCAELAKKEQEAAEKKK 197 Query: 548 CDHKCQHHKVPARKKQCVDECHRREHHHPSRAACERKCSHWRDPTRKERCVQTCMR 381 C + K A KK+C +E ++E + CE + ++ K++C + + Sbjct: 198 CAEAAKKEKEAAEKKKC-EERAKKEKEAAEKKKCEERAKKEKEAAEKKKCAEAAKK 252
>ADA19_HUMAN (Q9H013) ADAM 19 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 19) (Meltrin beta) (Metalloprotease and disintegrin dentritic antigen marker) (MADDAM) Length = 956 Score = 30.4 bits (67), Expect = 5.8 Identities = 18/52 (34%), Positives = 29/52 (55%) Frame = +1 Query: 70 KEKEQSSMELSSRRGIANHAATASYWSFILTPLPS*LARRIRGRIYRSVYTR 225 +E E SS+ LS+ RGI +S S+++ PLP + + IYRS + + Sbjct: 121 RETELSSVTLSTCRGIRGLITVSSNLSYVIEPLPDSKGQHL---IYRSEHLK 169
>VNCS_PAVPN (P18547) Noncapsid protein NS-1 (Nonstructural protein NS1)| Length = 660 Score = 29.6 bits (65), Expect = 9.9 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = -1 Query: 544 TTSANIIKFRRGRSSAWTSATDGSIITRAGRLARGSVAI 428 TT A +I +RG ++W ATD + L +G V I Sbjct: 52 TTDAEMINLQRGAETSWDQATDMEWESEIDSLTKGQVLI 90 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,946,156 Number of Sequences: 219361 Number of extensions: 1539764 Number of successful extensions: 4418 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 4037 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4402 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7479594804 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
