ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd18p05 |
|---|---|
| Clone Library Name | barley_pub |
>RIOK1_HUMAN (Q9BRS2) Serine/threonine-protein kinase RIO1 (EC 2.7.11.1) (RIO| kinase 1) Length = 568 Score = 170 bits (430), Expect = 5e-42 Identities = 79/116 (68%), Positives = 95/116 (81%) Frame = -3 Query: 710 RNHEKADRATVEQAIDPRTRMVLFKMLNSGVFNNISGCISTEKEGNVYHATKIDGQELAI 531 R +KADRATVEQ +DPRTRM+LFKML G+ I+GCIST KE NVYHA+ +G+ AI Sbjct: 148 RIKDKADRATVEQVLDPRTRMILFKMLTRGIITEINGCISTGKEANVYHASTANGESRAI 207 Query: 530 KVYKTSVLVFKDRDRYVQGDYRFRYGYCKHNPRKMVKTWAEKEMRNLKQWDIIFIP 363 K+YKTS+LVFKDRD+YV G++RFR+GYCK NPRKMVKTWAEKEMRNL + + IP Sbjct: 208 KIYKTSILVFKDRDKYVSGEFRFRHGYCKGNPRKMVKTWAEKEMRNLIRLNTAEIP 263
>RIO1_YEAST (Q12196) Serine/threonine-protein kinase RIO1 (EC 2.7.11.1)| (Ribosomal RNA-processing protein 10) Length = 484 Score = 125 bits (315), Expect = 1e-28 Identities = 65/127 (51%), Positives = 82/127 (64%), Gaps = 21/127 (16%) Frame = -3 Query: 701 EKADRATVEQAIDPRTRMVLFKMLNSGVFNNISGCISTEKEGNVYHA------------- 561 +KA+RATVE +DPRT L M+ GV +++GC+ST KE NVYHA Sbjct: 47 DKANRATVENVLDPRTMRFLKSMVTRGVIADLNGCLSTGKEANVYHAFAGTGKAPVIDEE 106 Query: 560 ------TKIDGQ--ELAIKVYKTSVLVFKDRDRYVQGDYRFRYGYCKHNPRKMVKTWAEK 405 + DG E AIK+YKTS+LVFKDR+RYV G++RFR +HNPRKM+K WAEK Sbjct: 107 TGQYEVLETDGSRAEYAIKIYKTSILVFKDRERYVDGEFRFRNSRSQHNPRKMIKIWAEK 166 Query: 404 EMRNLKQ 384 E RNLK+ Sbjct: 167 EFRNLKR 173
>RIOK3_MOUSE (Q9DBU3) Serine/threonine-protein kinase RIO3 (EC 2.7.11.1) (RIO| kinase 3) Length = 519 Score = 120 bits (302), Expect = 3e-27 Identities = 60/127 (47%), Positives = 88/127 (69%), Gaps = 11/127 (8%) Frame = -3 Query: 710 RNHEKADRATVEQAIDPRTRMVLFKMLNSGVFNNISGCISTEKEGNVYHA-------TKI 552 R HEK + +T E+A+DP+TR++++KM+NSG+ I+GCIST KE V+HA K Sbjct: 219 RLHEKKEHSTAEKAVDPKTRLLMYKMVNSGMLETITGCISTGKESVVFHAYGGSLEDEKE 278 Query: 551 DGQ----ELAIKVYKTSVLVFKDRDRYVQGDYRFRYGYCKHNPRKMVKTWAEKEMRNLKQ 384 DG+ E AIKV+KT++ FK+RD+Y++ D+RF+ + K NPRK+++ WAEKEM NL + Sbjct: 279 DGKAIPTECAIKVFKTTLNEFKNRDKYIKDDFRFKDRFSKLNPRKIIRMWAEKEMHNLTR 338 Query: 383 WDIIFIP 363 IP Sbjct: 339 MQKAGIP 345
>RIOK3_HUMAN (O14730) Serine/threonine-protein kinase RIO3 (EC 2.7.11.1) (RIO| kinase 3) (sudD homolog) Length = 519 Score = 118 bits (296), Expect = 2e-26 Identities = 58/127 (45%), Positives = 86/127 (67%), Gaps = 11/127 (8%) Frame = -3 Query: 710 RNHEKADRATVEQAIDPRTRMVLFKMLNSGVFNNISGCISTEKEGNVYHA---------- 561 R HEK + +T E+A+DP+TR++++KM+NSG+ I+GCIST KE V+HA Sbjct: 219 RLHEKKEHSTAEKAVDPKTRLLMYKMVNSGMLETITGCISTGKESVVFHAYGGSMEDEKE 278 Query: 560 -TKIDGQELAIKVYKTSVLVFKDRDRYVQGDYRFRYGYCKHNPRKMVKTWAEKEMRNLKQ 384 +K+ E AIKV+KT++ FK+RD+Y++ D+RF+ + K NPRK+ + WAEKEM NL + Sbjct: 279 DSKVIPTECAIKVFKTTLNEFKNRDKYIKDDFRFKDRFSKLNPRKIHRMWAEKEMHNLAR 338 Query: 383 WDIIFIP 363 IP Sbjct: 339 MQRAGIP 345
>YOT3_CAEEL (P34649) Putative RIO-type serine/threonine-protein kinase ZK632.3| (EC 2.7.11.1) Length = 510 Score = 98.6 bits (244), Expect = 2e-20 Identities = 47/109 (43%), Positives = 72/109 (66%) Frame = -3 Query: 710 RNHEKADRATVEQAIDPRTRMVLFKMLNSGVFNNISGCISTEKEGNVYHATKIDGQELAI 531 RN +K ++AT++ ++D TR++L K +N GVF+++ G I+T KE V HA + AI Sbjct: 215 RNKDKEEKATMDTSVDSDTRLLLLKWINQGVFDSVDGIIATGKESAVLHAAQDSATSYAI 274 Query: 530 KVYKTSVLVFKDRDRYVQGDYRFRYGYCKHNPRKMVKTWAEKEMRNLKQ 384 KVYKT++ FK+R YV+ D+RF+ NPR ++K WAE+E NL + Sbjct: 275 KVYKTTLSEFKNRSEYVKDDFRFK------NPRGVLKIWAEREFMNLSR 317
>Y444_METJA (Q57886) Putative RIO-type serine/threonine-protein kinase MJ0444| (EC 2.7.11.1) Length = 290 Score = 62.4 bits (150), Expect = 1e-09 Identities = 36/103 (34%), Positives = 53/103 (51%) Frame = -3 Query: 692 DRATVEQAIDPRTRMVLFKMLNSGVFNNISGCISTEKEGNVYHATKIDGQELAIKVYKTS 513 D T + D RT M LF +L G +++ KE V+ A K A+KVY+ + Sbjct: 50 DLKTANEVFDKRTLMTLFSLLAGKHLTEYIGIVNSGKEAVVFKARKGKFYR-AVKVYRVA 108 Query: 512 VLVFKDRDRYVQGDYRFRYGYCKHNPRKMVKTWAEKEMRNLKQ 384 FK +Y+QGD RF K + R+++ W EKE RNL++ Sbjct: 109 TCDFKTMSKYIQGDPRFHLR--KSSRRQIIHAWVEKEFRNLRR 149
>Y396_THEAC (Q03021) Putative RIO-type serine/threonine-protein kinase Ta0396| (EC 2.7.11.1) Length = 186 Score = 36.2 bits (82), Expect = 0.10 Identities = 18/59 (30%), Positives = 30/59 (50%) Frame = -3 Query: 539 LAIKVYKTSVLVFKDRDRYVQGDYRFRYGYCKHNPRKMVKTWAEKEMRNLKQWDIIFIP 363 +A+K++K S L F +Y++GD RF + + +V W KE NL + +P Sbjct: 12 VAVKIFKMSTLKFMSIRKYIEGDQRF--SKIRIDRNDIVPVWVRKEYTNLMALENAHVP 68
>YPTM1_MAIZE (P16976) GTP-binding protein YPTM1| Length = 208 Score = 34.7 bits (78), Expect = 0.30 Identities = 20/41 (48%), Positives = 25/41 (60%) Frame = -2 Query: 315 QAFVESLGMNFLANYAKESINVERTFNVERTFLNMSSEIKK 193 QA+ + +G+ FL AKESIN VE FL MS+ IKK Sbjct: 137 QAYAQEVGIPFLETSAKESIN------VEEAFLAMSAAIKK 171
>YPT1_PHYIN (Q01890) Ras-like GTP-binding protein YPT1| Length = 201 Score = 33.1 bits (74), Expect = 0.86 Identities = 17/41 (41%), Positives = 26/41 (63%) Frame = -2 Query: 309 FVESLGMNFLANYAKESINVERTFNVERTFLNMSSEIKKKV 187 F ESLG+ FL AK + NVE+ F+ M+++IKK++ Sbjct: 139 FAESLGIEFLETSAKNAA------NVEKAFMMMAAQIKKRM 173
>RAB1A_RAT (Q6NYB7) Ras-related protein Rab-1A| Length = 204 Score = 33.1 bits (74), Expect = 0.86 Identities = 17/41 (41%), Positives = 27/41 (65%) Frame = -2 Query: 309 FVESLGMNFLANYAKESINVERTFNVERTFLNMSSEIKKKV 187 F +SLG+ FL AK + N VE++F+ M++EIKK++ Sbjct: 141 FADSLGIPFLETSAKNATN------VEQSFMTMAAEIKKRM 175
>RAB1A_PIG (Q52NJ2) Ras-related protein Rab-1A| Length = 204 Score = 33.1 bits (74), Expect = 0.86 Identities = 17/41 (41%), Positives = 27/41 (65%) Frame = -2 Query: 309 FVESLGMNFLANYAKESINVERTFNVERTFLNMSSEIKKKV 187 F +SLG+ FL AK + N VE++F+ M++EIKK++ Sbjct: 141 FADSLGIPFLETSAKNATN------VEQSFMTMAAEIKKRM 175
>RAB1A_MOUSE (P62821) Ras-related protein Rab-1A (YPT1-related protein)| Length = 204 Score = 33.1 bits (74), Expect = 0.86 Identities = 17/41 (41%), Positives = 27/41 (65%) Frame = -2 Query: 309 FVESLGMNFLANYAKESINVERTFNVERTFLNMSSEIKKKV 187 F +SLG+ FL AK + N VE++F+ M++EIKK++ Sbjct: 141 FADSLGIPFLETSAKNATN------VEQSFMTMAAEIKKRM 175
>RAB1A_HUMAN (P62820) Ras-related protein Rab-1A (YPT1-related protein)| Length = 204 Score = 33.1 bits (74), Expect = 0.86 Identities = 17/41 (41%), Positives = 27/41 (65%) Frame = -2 Query: 309 FVESLGMNFLANYAKESINVERTFNVERTFLNMSSEIKKKV 187 F +SLG+ FL AK + N VE++F+ M++EIKK++ Sbjct: 141 FADSLGIPFLETSAKNATN------VEQSFMTMAAEIKKRM 175
>RAB1A_CANFA (P62822) Ras-related protein Rab-1A| Length = 204 Score = 33.1 bits (74), Expect = 0.86 Identities = 17/41 (41%), Positives = 27/41 (65%) Frame = -2 Query: 309 FVESLGMNFLANYAKESINVERTFNVERTFLNMSSEIKKKV 187 F +SLG+ FL AK + N VE++F+ M++EIKK++ Sbjct: 141 FADSLGIPFLETSAKNATN------VEQSFMTMAAEIKKRM 175
>RAB1B_RAT (P10536) Ras-related protein Rab-1B| Length = 201 Score = 32.7 bits (73), Expect = 1.1 Identities = 17/41 (41%), Positives = 26/41 (63%) Frame = -2 Query: 309 FVESLGMNFLANYAKESINVERTFNVERTFLNMSSEIKKKV 187 F +SLG+ FL AK + N VE+ F+ M++EIKK++ Sbjct: 139 FADSLGVPFLETSAKNATN------VEQAFMTMAAEIKKRM 173
>RAB1B_MOUSE (Q9D1G1) Ras-related protein Rab-1B| Length = 201 Score = 32.7 bits (73), Expect = 1.1 Identities = 17/41 (41%), Positives = 26/41 (63%) Frame = -2 Query: 309 FVESLGMNFLANYAKESINVERTFNVERTFLNMSSEIKKKV 187 F +SLG+ FL AK + N VE+ F+ M++EIKK++ Sbjct: 139 FADSLGVPFLETSAKNATN------VEQAFMTMAAEIKKRM 173
>RAB1B_HUMAN (Q9H0U4) Ras-related protein Rab-1B| Length = 201 Score = 32.7 bits (73), Expect = 1.1 Identities = 17/41 (41%), Positives = 26/41 (63%) Frame = -2 Query: 309 FVESLGMNFLANYAKESINVERTFNVERTFLNMSSEIKKKV 187 F +SLG+ FL AK + N VE+ F+ M++EIKK++ Sbjct: 139 FADSLGIPFLETSAKNATN------VEQAFMTMAAEIKKRM 173
>RAB1_DISOM (P22125) Ras-related protein ORAB-1| Length = 202 Score = 32.7 bits (73), Expect = 1.1 Identities = 17/41 (41%), Positives = 26/41 (63%) Frame = -2 Query: 309 FVESLGMNFLANYAKESINVERTFNVERTFLNMSSEIKKKV 187 F +SLG+ FL AK + N VE+ F+ M++EIKK++ Sbjct: 139 FADSLGIPFLETSAKNATN------VEQAFMTMAAEIKKRM 173
>ENGA_ANASP (Q8YZH7) GTP-binding protein engA| Length = 453 Score = 31.2 bits (69), Expect = 3.3 Identities = 16/67 (23%), Positives = 37/67 (55%), Gaps = 1/67 (1%) Frame = -3 Query: 584 KEGNVYHATKIDGQELAIKVYKTSVLVFKDR-DRYVQGDYRFRYGYCKHNPRKMVKTWAE 408 ++G +Y+ T++ Q I ++ F D RY++ +R + G+ K P +++ W Sbjct: 380 RQGRIYYGTQVSTQPPTIALFVNEAKRFNDNYRRYIERQFRQQLGF-KGTPIRLL--WRS 436 Query: 407 KEMRNLK 387 K++R+++ Sbjct: 437 KKVRDVE 443
>YPTV1_VOLCA (P31584) GTP-binding protein yptV1| Length = 203 Score = 30.8 bits (68), Expect = 4.3 Identities = 16/47 (34%), Positives = 27/47 (57%) Frame = -2 Query: 327 YD*FQAFVESLGMNFLANYAKESINVERTFNVERTFLNMSSEIKKKV 187 Y +AF + +G+ FL AK + NVE+ F + M++EIK ++ Sbjct: 133 YQAAKAFADEIGIPFLETSAKNATNVEQAF------MTMAAEIKNRM 173
>YPTC1_CHLRE (Q39571) GTP-binding protein YPTC1| Length = 203 Score = 30.8 bits (68), Expect = 4.3 Identities = 16/47 (34%), Positives = 27/47 (57%) Frame = -2 Query: 327 YD*FQAFVESLGMNFLANYAKESINVERTFNVERTFLNMSSEIKKKV 187 Y +AF + +G+ FL AK + NVE+ F + M++EIK ++ Sbjct: 133 YSVAKAFADEIGIPFLETSAKNATNVEQAF------MTMAAEIKNRM 173
>NUOJ_RICPR (Q9ZCG3) NADH-quinone oxidoreductase chain J (EC 1.6.99.5) (NADH| dehydrogenase I, chain J) (NDH-1, chain J) Length = 205 Score = 30.0 bits (66), Expect = 7.3 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 5/87 (5%) Frame = -3 Query: 632 LNSGVFNNISGCISTEKEGNVYHAT-----KIDGQELAIKVYKTSVLVFKDRDRYVQGDY 468 ++ + NNIS +T+ GNV + +I G L + + L K RDR D Sbjct: 120 ISFAIANNIS---NTKAIGNVLYTEFMLPFQIAGLILFVAMISCITLTLKKRDRIKHQDI 176 Query: 467 RFRYGYCKHNPRKMVKTWAEKEMRNLK 387 R + + K N M K K + N+K Sbjct: 177 RKQLSHNKSNVILMTKPILNKGVENIK 203
>Y1073_METJA (Q58473) Putative RIO-type serine/threonine-protein kinase MJ1073| (EC 2.7.11.1) Length = 270 Score = 29.6 bits (65), Expect = 9.5 Identities = 15/50 (30%), Positives = 22/50 (44%) Frame = -3 Query: 632 LNSGVFNNISGCISTEKEGNVYHATKIDGQELAIKVYKTSVLVFKDRDRY 483 + G+ I + KEG+VY DG+E +K +K F RY Sbjct: 59 VKKGILKAIGNKLGVGKEGDVYTVLLSDGREAVLKFHKHGRTCFTRGKRY 108
>RIC1_ORYSA (P40392) Ras-related protein RIC1| Length = 202 Score = 29.6 bits (65), Expect = 9.5 Identities = 15/47 (31%), Positives = 27/47 (57%) Frame = -2 Query: 327 YD*FQAFVESLGMNFLANYAKESINVERTFNVERTFLNMSSEIKKKV 187 Y+ +A + +G+ FL AK++ NVE+ F + M+ EIK ++ Sbjct: 133 YEAGKALADEIGIPFLETSAKDATNVEKAF------MTMAGEIKNRM 173
>ENGA_SYNEL (Q8DKI1) GTP-binding protein engA| Length = 449 Score = 29.6 bits (65), Expect = 9.5 Identities = 21/102 (20%), Positives = 47/102 (46%), Gaps = 5/102 (4%) Frame = -3 Query: 686 ATVEQAIDPRTRMVLFKMLNSGVFNNISG----CISTEKEGNVYHATKIDGQELAIKVYK 519 A V+ A++ R V ++N + + ++G +Y+AT++ Q ++ Sbjct: 343 AAVDAAVEQHRRRVTTAVVNDVIQEALHWHTPPATRQGRQGKIYYATQVATQPPTFAIFV 402 Query: 518 TSVLVFKDR-DRYVQGDYRFRYGYCKHNPRKMVKTWAEKEMR 396 +FK+ RY++ R + G+ + P +++ W K+ R Sbjct: 403 NDAKLFKENYRRYIESQIRQQLGF-RGTPIRLL--WRSKKPR 441
>YPT1_NEUCR (P33723) GTP-binding protein ypt1| Length = 203 Score = 29.6 bits (65), Expect = 9.5 Identities = 16/41 (39%), Positives = 25/41 (60%) Frame = -2 Query: 309 FVESLGMNFLANYAKESINVERTFNVERTFLNMSSEIKKKV 187 F +SLG+ FL AK + NVE+ FL M+ +IK+++ Sbjct: 139 FADSLGIPFLETSAKNA------SNVEQAFLTMARQIKERM 173 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,789,268 Number of Sequences: 219361 Number of extensions: 1866351 Number of successful extensions: 5037 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 4855 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5014 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7196276819 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
