ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd19e09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|Y12595.1|OSGOG2 O.sativa mRNA for Fd-GOGAT, partial, clone O... 127 4e-26
2emb|Y12594.1|OSGOG1 O.sativa mRNA for Fd-GOGAT, partial, clone O... 127 4e-26
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 127 4e-26
4dbj|AP005184.5| Oryza sativa (japonica cultivar-group) genomic D... 127 4e-26
5dbj|AP003833.3| Oryza sativa (japonica cultivar-group) genomic D... 127 4e-26
6dbj|AK068130.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 4e-26
7ref|XM_479407.1| Oryza sativa (japonica cultivar-group), mRNA 125 2e-25
8gb|AY109539.1| Zea mays CL2484_1 mRNA sequence 96 1e-16
9gb|M59190.1|MZEFEGLU Zea mays ferredoxin-dependent glutamate syn... 96 1e-16
10emb|X98541.1|VVGLUSYN1 V.vinifera mRNA for ferredoxin-dependent ... 50 0.008
11ref|NM_180432.2| Arabidopsis thaliana GLU1 (FERREDOXIN-DEPENDENT... 48 0.031
12ref|NM_120496.2| Arabidopsis thaliana GLU1 (FERREDOXIN-DEPENDENT... 48 0.031
13emb|Y09667.1|ATFDGSYN A.thaliana mRNA for ferredoxin-dependent g... 48 0.031
14emb|AL391716.1|ATF21E1 Arabidopsis thaliana DNA chromosome 5, BA... 48 0.031
15emb|BX833273.1|CNS09Z3E Arabidopsis thaliana Full-length cDNA Co... 48 0.031
16gb|AY189525.1| Arabidopsis thaliana ferredoxin-dependent glutama... 48 0.031
17gb|U39287.1|ATU39287 Arabidopsis thaliana ferredoxin-dependent g... 48 0.031
18gb|AC069220.11| Homo sapiens 3 BAC RP11-115B16 (Roswell Park Can... 46 0.12
19gb|DQ127702.1| Emiliania huxleyi virus 163 clone mike215.seq par... 44 0.48
20emb|AJ890364.1| Emiliania huxleyi virus 86 isolate EhV86 44 0.48
21emb|AL929226.7| Mouse DNA sequence from clone RP23-368N20 on chr... 44 0.48
22gb|AY819158.1| Hyla palmeri proopiomelanocortin A (POMC) gene, p... 40 7.5
23gb|AY240025.1| Drosophila melanogaster SLC26 membrane transporte... 40 7.5
24emb|BX927394.14| Zebrafish DNA sequence from clone CH211-262I10 ... 40 7.5
25gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome 40 7.5
26emb|AL596171.1| Listeria innocua Clip11262 complete genome, segm... 40 7.5
27ref|NM_143553.1| Drosophila melanogaster CG9702-RA (CG9702), mRNA 40 7.5
28gb|AC068954.5| Homo sapiens chromosome 8, clone RP11-45A11, comp... 40 7.5
29gb|AY075198.1| Drosophila melanogaster AT13857 full length cDNA 40 7.5
30gb|AC058823.4| Homo sapiens BAC clone RP11-810D13 from 4, comple... 40 7.5
31gb|AC007820.5|AC007820 Drosophila melanogaster, chromosome 3R, r... 40 7.5
32gb|AC008299.5|AC008299 Drosophila melanogaster, chromosome 3R, r... 40 7.5
33gb|AC102448.15| Mus musculus chromosome 3, clone RP24-209L5, com... 40 7.5
34emb|CT010464.7| M.truncatula DNA sequence from clone MTH2-95O22 ... 40 7.5
35gb|AE003774.3| Drosophila melanogaster chromosome 3R, section 11... 40 7.5
36emb|AL833803.8| Mouse DNA sequence from clone RP23-244H7 on chro... 40 7.5 
>emb|Y12595.1|OSGOG2 O.sativa mRNA for Fd-GOGAT, partial, clone OsGog2
          Length = 4120

 Score =  127 bits (64), Expect = 4e-26
 Identities = 111/127 (87%)
 Strand = Plus / Minus

                                                                        
Query: 422  atcacttagcagattgtacagctgttttttgcctggcaagtactctctcaaactcagcac 481
            ||||||| || |||||||| | ||||  |||| ||||||||||||  |||||||| ||||
Sbjct: 3511 atcacttcgccgattgtactgttgttgcttgcttggcaagtactcgttcaaactcggcac 3452

                                                                        
Query: 482  aagcttcaggagagtcttcttcgctgggtggcaccaactgccagaagagtggcagatatg 541
            |||||||||||||||||||||| || ||||| ||||  ||||||||||||||||||||||
Sbjct: 3451 aagcttcaggagagtcttcttcacttggtggtaccagttgccagaagagtggcagatatg 3392

                   
Query: 542  cctncca 548
            ||| |||
Sbjct: 3391 cctccca 3385



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 66/74 (89%), Gaps = 3/74 (4%)
 Strand = Plus / Minus

                                                                        
Query: 30   gcacatgccactcgcatgcctacaccacaggacgggtataaatataagaactaatgtgtc 89
            |||||||| |||||||||||    |||| |||||||||||||| ||||||||||||||||
Sbjct: 3936 gcacatgcgactcgcatgccc---ccactggacgggtataaatgtaagaactaatgtgtc 3880

                          
Query: 90   cagaacaaaaaata 103
            |||||| |||||||
Sbjct: 3879 cagaaccaaaaata 3866



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                      
Query: 264  aagatgccttggacagagcttccacaaaattgcagcctttgg 305
            |||||||||||| ||||||||||||||||| |||| ||||||
Sbjct: 3687 aagatgccttgggcagagcttccacaaaatcgcagtctttgg 3646



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 171  cctagcgtcagcgaaccaatttacagggg 199
            |||||||||||| ||||||||||||||||
Sbjct: 3790 cctagcgtcagcaaaccaatttacagggg 3762
to top
>emb|Y12594.1|OSGOG1 O.sativa mRNA for Fd-GOGAT, partial, clone OsGog1
          Length = 2851

 Score =  127 bits (64), Expect = 4e-26
 Identities = 111/127 (87%)
 Strand = Plus / Minus

                                                                        
Query: 422  atcacttagcagattgtacagctgttttttgcctggcaagtactctctcaaactcagcac 481
            ||||||| || |||||||| | ||||  |||| ||||||||||||  |||||||| ||||
Sbjct: 2242 atcacttcgccgattgtactgttgttgcttgcttggcaagtactcgttcaaactcggcac 2183

                                                                        
Query: 482  aagcttcaggagagtcttcttcgctgggtggcaccaactgccagaagagtggcagatatg 541
            |||||||||||||||||||||| || ||||| ||||  ||||||||||||||||||||||
Sbjct: 2182 aagcttcaggagagtcttcttcacttggtggtaccagttgccagaagagtggcagatatg 2123

                   
Query: 542  cctncca 548
            ||| |||
Sbjct: 2122 cctccca 2116



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 66/74 (89%), Gaps = 3/74 (4%)
 Strand = Plus / Minus

                                                                        
Query: 30   gcacatgccactcgcatgcctacaccacaggacgggtataaatataagaactaatgtgtc 89
            |||||||| |||||||||||    |||| |||||||||||||| ||||||||||||||||
Sbjct: 2667 gcacatgcgactcgcatgccc---ccactggacgggtataaatgtaagaactaatgtgtc 2611

                          
Query: 90   cagaacaaaaaata 103
            |||||| |||||||
Sbjct: 2610 cagaaccaaaaata 2597



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                      
Query: 264  aagatgccttggacagagcttccacaaaattgcagcctttgg 305
            |||||||||||| ||||||||||||||||| |||| ||||||
Sbjct: 2418 aagatgccttgggcagagcttccacaaaatcgcagtctttgg 2377



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 171  cctagcgtcagcgaaccaatttacagggg 199
            |||||||||||| ||||||||||||||||
Sbjct: 2521 cctagcgtcagcaaaccaatttacagggg 2493
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  127 bits (64), Expect = 4e-26
 Identities = 111/127 (87%)
 Strand = Plus / Plus

                                                                            
Query: 422      atcacttagcagattgtacagctgttttttgcctggcaagtactctctcaaactcagcac 481
                ||||||| || |||||||| | ||||  |||| ||||||||||||  |||||||| ||||
Sbjct: 27669980 atcacttcgccgattgtactgttgttgcttgcttggcaagtactcgttcaaactcggcac 27670039

                                                                            
Query: 482      aagcttcaggagagtcttcttcgctgggtggcaccaactgccagaagagtggcagatatg 541
                |||||||||||||||||||||| || ||||| ||||  ||||||||||||||||||||||
Sbjct: 27670040 aagcttcaggagagtcttcttcacttggtggtaccagttgccagaagagtggcagatatg 27670099

                       
Query: 542      cctncca 548
                ||| |||
Sbjct: 27670100 cctccca 27670106



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 66/74 (89%), Gaps = 3/74 (4%)
 Strand = Plus / Plus

                                                                            
Query: 30       gcacatgccactcgcatgcctacaccacaggacgggtataaatataagaactaatgtgtc 89
                |||||||| |||||||||||    |||| |||||||||||||| ||||||||||||||||
Sbjct: 27669553 gcacatgcgactcgcatgccc---ccactggacgggtataaatgtaagaactaatgtgtc 27669609

                              
Query: 90       cagaacaaaaaata 103
                |||||| |||||||
Sbjct: 27669610 cagaaccaaaaata 27669623



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                          
Query: 264      aagatgccttggacagagcttccacaaaattgcagcctttgg 305
                |||||||||||| ||||||||||||||||| |||| ||||||
Sbjct: 27669804 aagatgccttgggcagagcttccacaaaatcgcagtctttgg 27669845



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                             
Query: 171      cctagcgtcagcgaaccaatttacagggg 199
                |||||||||||| ||||||||||||||||
Sbjct: 27669701 cctagcgtcagcaaaccaatttacagggg 27669729
to top
>dbj|AP005184.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0047B07
          Length = 157797

 Score =  127 bits (64), Expect = 4e-26
 Identities = 111/127 (87%)
 Strand = Plus / Plus

                                                                          
Query: 422    atcacttagcagattgtacagctgttttttgcctggcaagtactctctcaaactcagcac 481
              ||||||| || |||||||| | ||||  |||| ||||||||||||  |||||||| ||||
Sbjct: 126973 atcacttcgccgattgtactgttgttgcttgcttggcaagtactcgttcaaactcggcac 127032

                                                                          
Query: 482    aagcttcaggagagtcttcttcgctgggtggcaccaactgccagaagagtggcagatatg 541
              |||||||||||||||||||||| || ||||| ||||  ||||||||||||||||||||||
Sbjct: 127033 aagcttcaggagagtcttcttcacttggtggtaccagttgccagaagagtggcagatatg 127092

                     
Query: 542    cctncca 548
              ||| |||
Sbjct: 127093 cctccca 127099



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 66/74 (89%), Gaps = 3/74 (4%)
 Strand = Plus / Plus

                                                                          
Query: 30     gcacatgccactcgcatgcctacaccacaggacgggtataaatataagaactaatgtgtc 89
              |||||||| |||||||||||    |||| |||||||||||||| ||||||||||||||||
Sbjct: 126546 gcacatgcgactcgcatgccc---ccactggacgggtataaatgtaagaactaatgtgtc 126602

                            
Query: 90     cagaacaaaaaata 103
              |||||| |||||||
Sbjct: 126603 cagaaccaaaaata 126616



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                        
Query: 264    aagatgccttggacagagcttccacaaaattgcagcctttgg 305
              |||||||||||| ||||||||||||||||| |||| ||||||
Sbjct: 126797 aagatgccttgggcagagcttccacaaaatcgcagtctttgg 126838



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                           
Query: 171    cctagcgtcagcgaaccaatttacagggg 199
              |||||||||||| ||||||||||||||||
Sbjct: 126694 cctagcgtcagcaaaccaatttacagggg 126722
to top
>dbj|AP003833.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1477_F01
          Length = 158792

 Score =  127 bits (64), Expect = 4e-26
 Identities = 111/127 (87%)
 Strand = Plus / Plus

                                                                         
Query: 422   atcacttagcagattgtacagctgttttttgcctggcaagtactctctcaaactcagcac 481
             ||||||| || |||||||| | ||||  |||| ||||||||||||  |||||||| ||||
Sbjct: 49082 atcacttcgccgattgtactgttgttgcttgcttggcaagtactcgttcaaactcggcac 49141

                                                                         
Query: 482   aagcttcaggagagtcttcttcgctgggtggcaccaactgccagaagagtggcagatatg 541
             |||||||||||||||||||||| || ||||| ||||  ||||||||||||||||||||||
Sbjct: 49142 aagcttcaggagagtcttcttcacttggtggtaccagttgccagaagagtggcagatatg 49201

                    
Query: 542   cctncca 548
             ||| |||
Sbjct: 49202 cctccca 49208



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 66/74 (89%), Gaps = 3/74 (4%)
 Strand = Plus / Plus

                                                                         
Query: 30    gcacatgccactcgcatgcctacaccacaggacgggtataaatataagaactaatgtgtc 89
             |||||||| |||||||||||    |||| |||||||||||||| ||||||||||||||||
Sbjct: 48655 gcacatgcgactcgcatgccc---ccactggacgggtataaatgtaagaactaatgtgtc 48711

                           
Query: 90    cagaacaaaaaata 103
             |||||| |||||||
Sbjct: 48712 cagaaccaaaaata 48725



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                       
Query: 264   aagatgccttggacagagcttccacaaaattgcagcctttgg 305
             |||||||||||| ||||||||||||||||| |||| ||||||
Sbjct: 48906 aagatgccttgggcagagcttccacaaaatcgcagtctttgg 48947



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 171   cctagcgtcagcgaaccaatttacagggg 199
             |||||||||||| ||||||||||||||||
Sbjct: 48803 cctagcgtcagcaaaccaatttacagggg 48831
to top
>dbj|AK068130.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013132D11, full
            insert sequence
          Length = 3596

 Score =  127 bits (64), Expect = 4e-26
 Identities = 111/127 (87%)
 Strand = Plus / Minus

                                                                        
Query: 422  atcacttagcagattgtacagctgttttttgcctggcaagtactctctcaaactcagcac 481
            ||||||| || |||||||| | ||||  |||| ||||||||||||  |||||||| ||||
Sbjct: 3126 atcacttcgccgattgtactgttgttgcttgcttggcaagtactcgttcaaactcggcac 3067

                                                                        
Query: 482  aagcttcaggagagtcttcttcgctgggtggcaccaactgccagaagagtggcagatatg 541
            |||||||||||||||||||||| || ||||| ||||  ||||||||||||||||||||||
Sbjct: 3066 aagcttcaggagagtcttcttcacttggtggtaccagttgccagaagagtggcagatatg 3007

                   
Query: 542  cctncca 548
            ||| |||
Sbjct: 3006 cctccca 3000



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 66/74 (89%), Gaps = 3/74 (4%)
 Strand = Plus / Minus

                                                                        
Query: 30   gcacatgccactcgcatgcctacaccacaggacgggtataaatataagaactaatgtgtc 89
            |||||||| |||||||||||    |||| |||||||||||||| ||||||||||||||||
Sbjct: 3553 gcacatgcgactcgcatgccc---ccactggacgggtataaatgtaagaactaatgtgtc 3497

                          
Query: 90   cagaacaaaaaata 103
            |||||| |||||||
Sbjct: 3496 cagaaccaaaaata 3483



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                      
Query: 264  aagatgccttggacagagcttccacaaaattgcagcctttgg 305
            |||||||||||| ||||||||||||||||| |||| ||||||
Sbjct: 3302 aagatgccttgggcagagcttccacaaaatcgcagtctttgg 3261



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 171  cctagcgtcagcgaaccaatttacagggg 199
            |||||||||||| ||||||||||||||||
Sbjct: 3405 cctagcgtcagcaaaccaatttacagggg 3377
to top
>ref|XM_479407.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 4923

 Score =  125 bits (63), Expect = 2e-25
 Identities = 110/126 (87%)
 Strand = Plus / Minus

                                                                        
Query: 423  tcacttagcagattgtacagctgttttttgcctggcaagtactctctcaaactcagcaca 482
            |||||| || |||||||| | ||||  |||| ||||||||||||  |||||||| |||||
Sbjct: 4923 tcacttcgccgattgtactgttgttgcttgcttggcaagtactcgttcaaactcggcaca 4864

                                                                        
Query: 483  agcttcaggagagtcttcttcgctgggtggcaccaactgccagaagagtggcagatatgc 542
            ||||||||||||||||||||| || ||||| ||||  |||||||||||||||||||||||
Sbjct: 4863 agcttcaggagagtcttcttcacttggtggtaccagttgccagaagagtggcagatatgc 4804

                  
Query: 543  ctncca 548
            || |||
Sbjct: 4803 ctccca 4798
to top
>gb|AY109539.1| Zea mays CL2484_1 mRNA sequence
          Length = 5572

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 86/99 (86%)
 Strand = Plus / Minus

                                                                        
Query: 450  ttgcctggcaagtactctctcaaactcagcacaagcttcaggagagtcttcttcgctggg 509
            |||| |||||||||||||||||||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 5151 ttgcttggcaagtactctctcaaactctgcacaagcctcaggcgagtcttcttcactggg 5092

                                                   
Query: 510  tggcaccaactgccagaagagtggcagatatgcctncca 548
             || ||||  ||||||||||| |||| ||| |||| |||
Sbjct: 5091 cggtaccagttgccagaagagcggcaaataggcctccca 5053



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                  
Query: 163  ccttgcagcctagcgtcagcgaaccaatttacaggggt 200
            |||||||||||||||||||| |||||||||||||||||
Sbjct: 5431 ccttgcagcctagcgtcagcaaaccaatttacaggggt 5394
to top
>gb|M59190.1|MZEFEGLU Zea mays ferredoxin-dependent glutamate synthase mRNA, complete cds
          Length = 5617

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 86/99 (86%)
 Strand = Plus / Minus

                                                                        
Query: 450  ttgcctggcaagtactctctcaaactcagcacaagcttcaggagagtcttcttcgctggg 509
            |||| |||||||||||||||||||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 5151 ttgcttggcaagtactctctcaaactctgcacaagcctcaggcgagtcttcttcactggg 5092

                                                   
Query: 510  tggcaccaactgccagaagagtggcagatatgcctncca 548
             || ||||  ||||||||||| |||| ||| |||| |||
Sbjct: 5091 cggtaccagttgccagaagagcggcaaataggcctccca 5053



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                  
Query: 163  ccttgcagcctagcgtcagcgaaccaatttacaggggt 200
            |||||||||||||||||||| |||||||||||||||||
Sbjct: 5431 ccttgcagcctagcgtcagcaaaccaatttacaggggt 5394
to top
>emb|X98541.1|VVGLUSYN1 V.vinifera mRNA for ferredoxin-dependent glutamate synthase (clone
           pGOGAT5)
          Length = 578

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                       
Query: 465 tctctcaaactcagcacaagcttcaggagagtcttcttcgctgggtggcaccaactgcca 524
           |||||||||||| || | |||||| || | |||||| || ||||| || ||||  |||||
Sbjct: 180 tctctcaaactctgcgctagcttctggggtgtcttcctcactgggaggaaccagttgcca 121

                            
Query: 525 gaagagtggcagatatg 541
           |||||||||||| ||||
Sbjct: 120 gaagagtggcaggtatg 104
to top
>ref|NM_180432.2| Arabidopsis thaliana GLU1 (FERREDOXIN-DEPENDENT GLUAMATE SYNTHASE 1)
            AT5G04140 (GLU1) transcript variant AT5G04140.2 mRNA,
            complete cds
          Length = 5199

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                        
Query: 476  cagcacaagcttcaggagagtcttcttcgctgggtggcaccaactgccagaagagtggca 535
            ||||| |||||||||||| |||||| || || ||||| ||||  ||||||||||| || |
Sbjct: 4900 cagcagaagcttcaggagtgtcttcctcactcggtggaaccagttgccagaagagaggta 4841

                
Query: 536  gata 539
            ||||
Sbjct: 4840 gata 4837
to top
>ref|NM_120496.2| Arabidopsis thaliana GLU1 (FERREDOXIN-DEPENDENT GLUAMATE SYNTHASE 1)
            AT5G04140 (GLU1) transcript variant AT5G04140.1 mRNA,
            complete cds
          Length = 5304

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                        
Query: 476  cagcacaagcttcaggagagtcttcttcgctgggtggcaccaactgccagaagagtggca 535
            ||||| |||||||||||| |||||| || || ||||| ||||  ||||||||||| || |
Sbjct: 5001 cagcagaagcttcaggagtgtcttcctcactcggtggaaccagttgccagaagagaggta 4942

                
Query: 536  gata 539
            ||||
Sbjct: 4941 gata 4938
to top
>emb|Y09667.1|ATFDGSYN A.thaliana mRNA for ferredoxin-dependent glutamate synthase
          Length = 5178

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                        
Query: 476  cagcacaagcttcaggagagtcttcttcgctgggtggcaccaactgccagaagagtggca 535
            ||||| |||||||||||| |||||| || || ||||| ||||  ||||||||||| || |
Sbjct: 4900 cagcagaagcttcaggagtgtcttcctcactcggtggaaccagttgccagaagagaggta 4841

                
Query: 536  gata 539
            ||||
Sbjct: 4840 gata 4837
to top
>emb|AL391716.1|ATF21E1 Arabidopsis thaliana DNA chromosome 5, BAC clone F21E1 (ESSA project)
          Length = 97451

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                         
Query: 476   cagcacaagcttcaggagagtcttcttcgctgggtggcaccaactgccagaagagtggca 535
             ||||| |||||||||||| |||||| || || ||||| ||||  ||||||||||| || |
Sbjct: 41686 cagcagaagcttcaggagtgtcttcctcactcggtggaaccagttgccagaagagaggta 41627

                 
Query: 536   gata 539
             ||||
Sbjct: 41626 gata 41623
to top
>emb|BX833273.1|CNS09Z3E Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL42ZB10 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 946

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                       
Query: 476 cagcacaagcttcaggagagtcttcttcgctgggtggcaccaactgccagaagagtggca 535
           ||||| |||||||||||| |||||| || || ||||| ||||  ||||||||||| || |
Sbjct: 684 cagcagaagcttcaggagtgtcttcctcactcggtggaaccagttgccagaagagaggta 625

               
Query: 536 gata 539
           ||||
Sbjct: 624 gata 621
to top
>gb|AY189525.1| Arabidopsis thaliana ferredoxin-dependent glutamate synthase gene,
            complete cds
          Length = 8628

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                        
Query: 476  cagcacaagcttcaggagagtcttcttcgctgggtggcaccaactgccagaagagtggca 535
            ||||| |||||||||||| |||||| || || ||||| ||||  ||||||||||| || |
Sbjct: 8365 cagcagaagcttcaggagtgtcttcctcactcggtggaaccagttgccagaagagaggta 8306

                
Query: 536  gata 539
            ||||
Sbjct: 8305 gata 8302
to top
>gb|U39287.1|ATU39287 Arabidopsis thaliana ferredoxin-dependent glutamate synthase
            precursor (GLU1) mRNA, complete cds
          Length = 5303

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                        
Query: 476  cagcacaagcttcaggagagtcttcttcgctgggtggcaccaactgccagaagagtggca 535
            ||||| |||||||||||| |||||| || || ||||| ||||  ||||||||||| || |
Sbjct: 5000 cagcagaagcttcaggagtgtcttcctcactcggtggaaccagttgccagaagagaggta 4941

                
Query: 536  gata 539
            ||||
Sbjct: 4940 gata 4937
to top
>gb|AC069220.11| Homo sapiens 3 BAC RP11-115B16 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 157448

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 473    actcagcacaagcttcaggagag 495
              |||||||||||||||||||||||
Sbjct: 102896 actcagcacaagcttcaggagag 102918
to top
>gb|DQ127702.1| Emiliania huxleyi virus 163 clone mike215.seq partial sequence
          Length = 645

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 90  cagaacaaaaaatataattaca 111
           ||||||||||||||||||||||
Sbjct: 245 cagaacaaaaaatataattaca 224
to top
>emb|AJ890364.1| Emiliania huxleyi virus 86 isolate EhV86
          Length = 407339

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 90     cagaacaaaaaatataattaca 111
              ||||||||||||||||||||||
Sbjct: 268710 cagaacaaaaaatataattaca 268689
to top
>emb|AL929226.7| Mouse DNA sequence from clone RP23-368N20 on chromosome X, complete
            sequence
          Length = 79248

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 62   cgggtataaatataagaactaa 83
            ||||||||||||||||||||||
Sbjct: 7441 cgggtataaatataagaactaa 7420
to top
>gb|AY819158.1| Hyla palmeri proopiomelanocortin A (POMC) gene, partial cds
          Length = 523

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 262 agaagatgccttggacagag 281
           ||||||||||||||||||||
Sbjct: 229 agaagatgccttggacagag 248
to top
>gb|AY240025.1| Drosophila melanogaster SLC26 membrane transporter protein (CG9702)
           mRNA, complete cds
          Length = 2337

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 484 gcttcaggagagtcttcttc 503
           ||||||||||||||||||||
Sbjct: 461 gcttcaggagagtcttcttc 442
to top
>emb|BX927394.14| Zebrafish DNA sequence from clone CH211-262I10 in linkage group 21,
              complete sequence
          Length = 164899

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 88     tccagaacaaaaaatataat 107
              ||||||||||||||||||||
Sbjct: 127681 tccagaacaaaaaatataat 127700
to top
>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome
          Length = 5373180

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 92      gaacaaaaaatataattaca 111
               ||||||||||||||||||||
Sbjct: 3061037 gaacaaaaaatataattaca 3061056
to top
>emb|AL596171.1| Listeria innocua Clip11262 complete genome, segment 9/12
          Length = 258650

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 468    ctcaaactcagcacaagcttcaggagag 495
              ||||||||||| | ||||||||||||||
Sbjct: 228667 ctcaaactcaggaaaagcttcaggagag 228640
to top
>ref|NM_143553.1| Drosophila melanogaster CG9702-RA (CG9702), mRNA
          Length = 2318

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 484 gcttcaggagagtcttcttc 503
           ||||||||||||||||||||
Sbjct: 458 gcttcaggagagtcttcttc 439
to top
>gb|AC068954.5| Homo sapiens chromosome 8, clone RP11-45A11, complete sequence
          Length = 163541

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 289    aaaattgcagcctttggtga 308
              ||||||||||||||||||||
Sbjct: 106966 aaaattgcagcctttggtga 106985
to top
>gb|AY075198.1| Drosophila melanogaster AT13857 full length cDNA
          Length = 2334

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 484 gcttcaggagagtcttcttc 503
           ||||||||||||||||||||
Sbjct: 458 gcttcaggagagtcttcttc 439
to top
>gb|AC058823.4| Homo sapiens BAC clone RP11-810D13 from 4, complete sequence
          Length = 144277

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 455   tggcaagtactctctcaaac 474
             ||||||||||||||||||||
Sbjct: 93156 tggcaagtactctctcaaac 93175
to top
>gb|AC007820.5|AC007820 Drosophila melanogaster, chromosome 3R, region 99F-99F, BAC clone
             BACR12J15, complete sequence
          Length = 198734

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 484   gcttcaggagagtcttcttc 503
             ||||||||||||||||||||
Sbjct: 58589 gcttcaggagagtcttcttc 58570
to top
>gb|AC008299.5|AC008299 Drosophila melanogaster, chromosome 3R, region 99F4-99F11, BAC clone
              BACR48G16, complete sequence
          Length = 173844

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 484    gcttcaggagagtcttcttc 503
              ||||||||||||||||||||
Sbjct: 150658 gcttcaggagagtcttcttc 150639
to top
>gb|AC102448.15| Mus musculus chromosome 3, clone RP24-209L5, complete sequence
          Length = 159371

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 5      tttatttatactgtactgaa 24
              ||||||||||||||||||||
Sbjct: 127706 tttatttatactgtactgaa 127725
to top
>emb|CT010464.7| M.truncatula DNA sequence from clone MTH2-95O22 on chromosome 3,
             complete sequence
          Length = 117153

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 384   ttagctttgatcattttggcgatt 407
             ||||||||||||||||| ||||||
Sbjct: 27297 ttagctttgatcattttcgcgatt 27274
to top
>gb|AE003774.3| Drosophila melanogaster chromosome 3R, section 112 of 118 of the complete
              sequence
          Length = 239051

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 484    gcttcaggagagtcttcttc 503
              ||||||||||||||||||||
Sbjct: 148241 gcttcaggagagtcttcttc 148222
to top
>emb|AL833803.8| Mouse DNA sequence from clone RP23-244H7 on chromosome 2, complete
             sequence
          Length = 226251

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    tgccactcgcatgcctacac 54
             ||||||||||||||||||||
Sbjct: 32275 tgccactcgcatgcctacac 32256


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,275,947
Number of Sequences: 3902068
Number of extensions: 5275947
Number of successful extensions: 93386
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93240
Number of HSP's gapped (non-prelim): 140
length of query: 555
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 532
effective length of database: 17,143,297,704
effective search space: 9120234378528
effective search space used: 9120234378528
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top