ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd19e07 |
|---|---|
| Clone Library Name | barley_pub |
>SPC21_RAT (Q9WTR7) Microsomal signal peptidase 21 kDa subunit (EC 3.4.-.-)| (SPase 21 kDa subunit) (SPC21) (SEC11-like 3) Length = 191 Score = 153 bits (387), Expect = 3e-37 Identities = 74/126 (58%), Positives = 96/126 (76%), Gaps = 1/126 (0%) Frame = -2 Query: 542 GSMEPGFKRGDILFL-HMSQDPIRTGEIVVFNIDGREIPIVHRVIKVHERQESGEVDILT 366 GSMEP F RGD+LFL + +DPIR GEIVVF ++GR+IPIVHRVIKVHE+ ++G++ LT Sbjct: 66 GSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEK-DNGDIKFLT 124 Query: 365 KGDNNFGDDRLLYAQGQLWLQKHHIMGRAVGYLPYVGWVTIVMTEKPIIKYLLIGALGLL 186 KGDNN DDR LY +GQ WL+K ++GRA G+LPYVG VTI+M + P KY L+ +G Sbjct: 125 KGDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALVAVMGAY 184 Query: 185 VITSKE 168 V+ +E Sbjct: 185 VLLKRE 190
>SPC21_PONPY (Q5RC30) Microsomal signal peptidase 21 kDa subunit (EC 3.4.-.-)| (SPase 21 kDa subunit) (SPC21) (SEC11-like 3) Length = 191 Score = 153 bits (386), Expect = 3e-37 Identities = 74/126 (58%), Positives = 96/126 (76%), Gaps = 1/126 (0%) Frame = -2 Query: 542 GSMEPGFKRGDILFL-HMSQDPIRTGEIVVFNIDGREIPIVHRVIKVHERQESGEVDILT 366 GSMEP F RGD+LFL + +DPIR GEIVVF ++GR+IPIVHRVIKVHE+ ++G++ LT Sbjct: 66 GSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEK-DNGDIKFLT 124 Query: 365 KGDNNFGDDRLLYAQGQLWLQKHHIMGRAVGYLPYVGWVTIVMTEKPIIKYLLIGALGLL 186 KGDNN DDR LY +GQ WL+K ++GRA G+LPYVG VTI+M + P KY L+ +G Sbjct: 125 KGDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLAVMGAY 184 Query: 185 VITSKE 168 V+ +E Sbjct: 185 VLLKRE 190
>SPC21_MOUSE (Q9D8V7) Microsomal signal peptidase 21 kDa subunit (EC 3.4.-.-)| (SPase 21 kDa subunit) (SPC21) (SEC11-like 3) Length = 191 Score = 153 bits (386), Expect = 3e-37 Identities = 74/126 (58%), Positives = 96/126 (76%), Gaps = 1/126 (0%) Frame = -2 Query: 542 GSMEPGFKRGDILFL-HMSQDPIRTGEIVVFNIDGREIPIVHRVIKVHERQESGEVDILT 366 GSMEP F RGD+LFL + +DPIR GEIVVF ++GR+IPIVHRVIKVHE+ ++G++ LT Sbjct: 66 GSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEK-DNGDIKFLT 124 Query: 365 KGDNNFGDDRLLYAQGQLWLQKHHIMGRAVGYLPYVGWVTIVMTEKPIIKYLLIGALGLL 186 KGDNN DDR LY +GQ WL+K ++GRA G+LPYVG VTI+M + P KY L+ +G Sbjct: 125 KGDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLAVMGAY 184 Query: 185 VITSKE 168 V+ +E Sbjct: 185 VLLKRE 190
>SPC21_HUMAN (Q9BY50) Microsomal signal peptidase 21 kDa subunit (EC 3.4.-.-)| (SPase 21 kDa subunit) (SPC21) (SEC11-like 3) Length = 191 Score = 153 bits (386), Expect = 3e-37 Identities = 74/126 (58%), Positives = 96/126 (76%), Gaps = 1/126 (0%) Frame = -2 Query: 542 GSMEPGFKRGDILFL-HMSQDPIRTGEIVVFNIDGREIPIVHRVIKVHERQESGEVDILT 366 GSMEP F RGD+LFL + +DPIR GEIVVF ++GR+IPIVHRVIKVHE+ ++G++ LT Sbjct: 66 GSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEK-DNGDIKFLT 124 Query: 365 KGDNNFGDDRLLYAQGQLWLQKHHIMGRAVGYLPYVGWVTIVMTEKPIIKYLLIGALGLL 186 KGDNN DDR LY +GQ WL+K ++GRA G+LPYVG VTI+M + P KY L+ +G Sbjct: 125 KGDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLAVMGAY 184 Query: 185 VITSKE 168 V+ +E Sbjct: 185 VLLKRE 190
>SPC21_CANFA (P13679) Microsomal signal peptidase 21 kDa subunit (EC 3.4.-.-)| (SPase 21 kDa subunit) (SPC21) (SEC11-like 3) Length = 191 Score = 153 bits (386), Expect = 3e-37 Identities = 74/126 (58%), Positives = 96/126 (76%), Gaps = 1/126 (0%) Frame = -2 Query: 542 GSMEPGFKRGDILFL-HMSQDPIRTGEIVVFNIDGREIPIVHRVIKVHERQESGEVDILT 366 GSMEP F RGD+LFL + +DPIR GEIVVF ++GR+IPIVHRVIKVHE+ ++G++ LT Sbjct: 66 GSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEK-DNGDIKFLT 124 Query: 365 KGDNNFGDDRLLYAQGQLWLQKHHIMGRAVGYLPYVGWVTIVMTEKPIIKYLLIGALGLL 186 KGDNN DDR LY +GQ WL+K ++GRA G+LPYVG VTI+M + P KY L+ +G Sbjct: 125 KGDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLAVMGAY 184 Query: 185 VITSKE 168 V+ +E Sbjct: 185 VLLKRE 190
>SPC18_MOUSE (Q9R0P6) Microsomal signal peptidase 18 kDa subunit (EC 3.4.-.-)| (SPase 18 kDa subunit) (SPC18) (Endopeptidase SP18) (SEC11-like 1) (Sid 2895) Length = 179 Score = 152 bits (384), Expect = 6e-37 Identities = 75/126 (59%), Positives = 96/126 (76%), Gaps = 1/126 (0%) Frame = -2 Query: 542 GSMEPGFKRGDILFL-HMSQDPIRTGEIVVFNIDGREIPIVHRVIKVHERQESGEVDILT 366 GSMEP F RGD+LFL + +DPIR GEIVVF I+GREIPIVHRV+K+HE+Q+ G + LT Sbjct: 55 GSMEPAFHRGDLLFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQD-GHIKFLT 113 Query: 365 KGDNNFGDDRLLYAQGQLWLQKHHIMGRAVGYLPYVGWVTIVMTEKPIIKYLLIGALGLL 186 KGDNN DDR LY QGQ WL+K ++GRA G++PY+G VTI+M + P KY ++ LGL Sbjct: 114 KGDNNAVDDRGLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLFLLGLF 173 Query: 185 VITSKE 168 V+ +E Sbjct: 174 VLVHRE 179
>SPC18_PONPY (Q5R9C7) Microsomal signal peptidase 18 kDa subunit (EC 3.4.-.-)| (SPase 18 kDa subunit) (SPC18) (Endopeptidase SP18) (SEC11-like 1) Length = 179 Score = 152 bits (383), Expect = 8e-37 Identities = 75/126 (59%), Positives = 96/126 (76%), Gaps = 1/126 (0%) Frame = -2 Query: 542 GSMEPGFKRGDILFL-HMSQDPIRTGEIVVFNIDGREIPIVHRVIKVHERQESGEVDILT 366 GSMEP F RGD+LFL + +DPIR GEIVVF I+GREIPIVHRV+K+HE+Q +G + LT Sbjct: 55 GSMEPAFHRGDLLFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQ-NGHIKFLT 113 Query: 365 KGDNNFGDDRLLYAQGQLWLQKHHIMGRAVGYLPYVGWVTIVMTEKPIIKYLLIGALGLL 186 KGDNN DDR LY QGQ WL+K ++GRA G++PY+G VTI+M + P KY ++ LGL Sbjct: 114 KGDNNAVDDRGLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLFLLGLF 173 Query: 185 VITSKE 168 V+ +E Sbjct: 174 VLVHRE 179
>SPC18_HUMAN (P67812) Microsomal signal peptidase 18 kDa subunit (EC 3.4.-.-)| (SPase 18 kDa subunit) (SPC18) (Endopeptidase SP18) (SEC11-like 1) Length = 179 Score = 152 bits (383), Expect = 8e-37 Identities = 75/126 (59%), Positives = 96/126 (76%), Gaps = 1/126 (0%) Frame = -2 Query: 542 GSMEPGFKRGDILFL-HMSQDPIRTGEIVVFNIDGREIPIVHRVIKVHERQESGEVDILT 366 GSMEP F RGD+LFL + +DPIR GEIVVF I+GREIPIVHRV+K+HE+Q +G + LT Sbjct: 55 GSMEPAFHRGDLLFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQ-NGHIKFLT 113 Query: 365 KGDNNFGDDRLLYAQGQLWLQKHHIMGRAVGYLPYVGWVTIVMTEKPIIKYLLIGALGLL 186 KGDNN DDR LY QGQ WL+K ++GRA G++PY+G VTI+M + P KY ++ LGL Sbjct: 114 KGDNNAVDDRGLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLFLLGLF 173 Query: 185 VITSKE 168 V+ +E Sbjct: 174 VLVHRE 179
>SPC18_CANFA (P67811) Microsomal signal peptidase 18 kDa subunit (EC 3.4.-.-)| (SPase 18 kDa subunit) (SPC18) (Endopeptidase SP18) (SEC11-like 1) Length = 179 Score = 152 bits (383), Expect = 8e-37 Identities = 75/126 (59%), Positives = 96/126 (76%), Gaps = 1/126 (0%) Frame = -2 Query: 542 GSMEPGFKRGDILFL-HMSQDPIRTGEIVVFNIDGREIPIVHRVIKVHERQESGEVDILT 366 GSMEP F RGD+LFL + +DPIR GEIVVF I+GREIPIVHRV+K+HE+Q +G + LT Sbjct: 55 GSMEPAFHRGDLLFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQ-NGHIKFLT 113 Query: 365 KGDNNFGDDRLLYAQGQLWLQKHHIMGRAVGYLPYVGWVTIVMTEKPIIKYLLIGALGLL 186 KGDNN DDR LY QGQ WL+K ++GRA G++PY+G VTI+M + P KY ++ LGL Sbjct: 114 KGDNNAVDDRGLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLFLLGLF 173 Query: 185 VITSKE 168 V+ +E Sbjct: 174 VLVHRE 179
>SPC18_BOVIN (P67810) Microsomal signal peptidase 18 kDa subunit (EC 3.4.-.-)| (SPase 18 kDa subunit) (SPC18) (Endopeptidase SP18) (SEC11-like 1) Length = 179 Score = 152 bits (383), Expect = 8e-37 Identities = 75/126 (59%), Positives = 96/126 (76%), Gaps = 1/126 (0%) Frame = -2 Query: 542 GSMEPGFKRGDILFL-HMSQDPIRTGEIVVFNIDGREIPIVHRVIKVHERQESGEVDILT 366 GSMEP F RGD+LFL + +DPIR GEIVVF I+GREIPIVHRV+K+HE+Q +G + LT Sbjct: 55 GSMEPAFHRGDLLFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQ-NGHIKFLT 113 Query: 365 KGDNNFGDDRLLYAQGQLWLQKHHIMGRAVGYLPYVGWVTIVMTEKPIIKYLLIGALGLL 186 KGDNN DDR LY QGQ WL+K ++GRA G++PY+G VTI+M + P KY ++ LGL Sbjct: 114 KGDNNAVDDRGLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLFLLGLF 173 Query: 185 VITSKE 168 V+ +E Sbjct: 174 VLVHRE 179
>SPC18_RAT (P42667) Microsomal signal peptidase 18 kDa subunit (EC 3.4.-.-)| (SPase 18 kDa subunit) (SPC18) (Endopeptidase SP18) (SEC11-like 1) Length = 179 Score = 150 bits (379), Expect = 2e-36 Identities = 74/126 (58%), Positives = 95/126 (75%), Gaps = 1/126 (0%) Frame = -2 Query: 542 GSMEPGFKRGDILFL-HMSQDPIRTGEIVVFNIDGREIPIVHRVIKVHERQESGEVDILT 366 GSMEP F RGD+LFL + +DPIR GEIVVF I+GREIPIVHRV+K+HE+Q+ G + LT Sbjct: 55 GSMEPAFHRGDLLFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQD-GHIKFLT 113 Query: 365 KGDNNFGDDRLLYAQGQLWLQKHHIMGRAVGYLPYVGWVTIVMTEKPIIKYLLIGALGLL 186 KGDNN DDR LY QGQ WL+K ++GRA G++PY+G VTI+M + P Y ++ LGL Sbjct: 114 KGDNNAVDDRGLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFSYAVLFLLGLF 173 Query: 185 VITSKE 168 V+ +E Sbjct: 174 VLVHRE 179
>SEC11_YEAST (P15367) Signal sequence-processing protein SEC11 (EC 3.4.-.-)| Length = 167 Score = 108 bits (269), Expect = 1e-23 Identities = 55/126 (43%), Positives = 81/126 (64%), Gaps = 1/126 (0%) Frame = -2 Query: 542 GSMEPGFKRGDILFLHMSQDPIRTGEIVVFNIDGREIPIVHRVIKVHERQESGEVDILTK 363 GSMEP F+RGDILFL + G++VV+ ++G++IPIVHRV++ H + +LTK Sbjct: 43 GSMEPAFQRGDILFLWNRNTFNQVGDVVVYEVEGKQIPIVHRVLRQHNNHADKQF-LLTK 101 Query: 362 GDNNFGDDRLLYAQGQLWLQK-HHIMGRAVGYLPYVGWVTIVMTEKPIIKYLLIGALGLL 186 GDNN G+D LYA +++L K I+G GY P +G++TI ++E K+ L+G LGL Sbjct: 102 GDNNAGNDISLYANKKIYLNKSKEIVGTVKGYFPQLGYITIWISENKYAKFALLGMLGLS 161 Query: 185 VITSKE 168 + E Sbjct: 162 ALLGGE 167
>KS6A6_HUMAN (Q9UK32) Ribosomal protein S6 kinase alpha-6 (EC 2.7.11.1)| (S6K-alpha 6) (90 kDa ribosomal protein S6 kinase 6) (p90-RSK 6) (Ribosomal S6 kinase 4) (RSK-4) (pp90RSK4) Length = 745 Score = 32.3 bits (72), Expect = 0.88 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 8/84 (9%) Frame = -2 Query: 527 GFKRGDILFLHMSQDPIRTGEIVVFNIDG--REIPIVHRVIKVHERQESGEVDIL-TKGD 357 G G++ L M +P+ GE + +G +EIPI H V + +E+ + + ++L G Sbjct: 22 GASSGEVNGLKMVDEPMEEGEADSCHDEGVVKEIPITHHVKEGYEKADPAQFELLKVLGQ 81 Query: 356 NNFGDDRLLYAQ-----GQLWLQK 300 +FG L+ + GQL+ K Sbjct: 82 GSFGKVFLVRKKTGPDAGQLYAMK 105
>RMAR_KLULA (Q6DN56) Mitochondrial ribosomal protein VAR1| Length = 388 Score = 31.2 bits (69), Expect = 2.0 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 3/72 (4%) Frame = +3 Query: 327 IQKSVIPKIIITF---REDINFSTFLAFMNLNHTVNNWNFTAINIKNNYFSSADRILAHV 497 I K +I K I + +I F +L++ N+N +NN N NI +NY + + L ++ Sbjct: 110 IYKLIISKPIFEHSINKVNIKFFYYLSYKNINKNINNNNNLINNIYSNYKFNINSKLINL 169 Query: 498 QKQNITPFKSRL 533 NI + L Sbjct: 170 LNNNINSISNIL 181
>ATL4D_ARATH (Q9M0R4) Putative RING-H2 finger protein ATL4D precursor| Length = 357 Score = 31.2 bits (69), Expect = 2.0 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%) Frame = +2 Query: 77 SSWYTAQQNLFCPRLHL--HYKIKPCTKVDSFTLSM 178 SSW+ + LF PR H H ++PC +D FTL + Sbjct: 223 SSWHVPE--LFLPRSHSTGHSLVQPCQNIDRFTLQL 256
>ARAB_SHIFL (Q83MG5) Ribulokinase (EC 2.7.1.16)| Length = 565 Score = 30.0 bits (66), Expect = 4.4 Identities = 17/48 (35%), Positives = 24/48 (50%) Frame = +3 Query: 66 KIHRPVGTRRNKTCSALDYICTTRSNHAQRLTASLFRCYDQQAQRANQ 209 K+H + + + K SA++ RS AQR L+R Y Q A A Q Sbjct: 501 KVHADIPSAQQKMASAVEKTLQPRSEQAQRF-EQLYRRYQQWAMSAEQ 547
>ARAB_ECO57 (P58541) Ribulokinase (EC 2.7.1.16)| Length = 565 Score = 30.0 bits (66), Expect = 4.4 Identities = 17/48 (35%), Positives = 24/48 (50%) Frame = +3 Query: 66 KIHRPVGTRRNKTCSALDYICTTRSNHAQRLTASLFRCYDQQAQRANQ 209 K+H + + + K SA++ RS AQR L+R Y Q A A Q Sbjct: 501 KVHADIPSAQQKMASAVEKTLQPRSEQAQRF-EQLYRRYQQWAMSAEQ 547
>RPOC_ZYMMO (Q5NPK4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1391 Score = 29.3 bits (64), Expect = 7.5 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = -2 Query: 476 RTGEIVVFNIDGREIPIVHRVIKVHERQESGEVDILTKGD 357 RTGE+V+ DGRE+ ++ H G D++ KGD Sbjct: 971 RTGEVVLVGTDGRELASSRILLGAHLLHNDG--DMVKKGD 1008
>MEGF6_RAT (O88281) Multiple epidermal growth factor-like domains 6 precursor| (EGF-like domain-containing protein 3) (Multiple EGF-like domain protein 3) Length = 1574 Score = 28.9 bits (63), Expect = 9.7 Identities = 13/34 (38%), Positives = 17/34 (50%) Frame = -1 Query: 339 PTFVCTRAALASEASHYGTGCRLSTICWVGYYCD 238 P FV +R A YGTGC++ C +CD Sbjct: 810 PGFVGSRCQDTCSAGWYGTGCQIRCACANDGHCD 843
>ARAB_ECOL6 (Q8FL88) Ribulokinase (EC 2.7.1.16)| Length = 565 Score = 28.9 bits (63), Expect = 9.7 Identities = 16/48 (33%), Positives = 24/48 (50%) Frame = +3 Query: 66 KIHRPVGTRRNKTCSALDYICTTRSNHAQRLTASLFRCYDQQAQRANQ 209 K+H + + + K SA++ R+ AQR L+R Y Q A A Q Sbjct: 501 KVHADIPSAQQKMASAVEKTLQPRNEQAQRF-EQLYRRYQQWAMSAEQ 547 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 82,566,268 Number of Sequences: 219361 Number of extensions: 1706228 Number of successful extensions: 4433 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 4278 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4407 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4315578075 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
