Clone Name | rbasd19e07 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK111407.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-182-E09, full insert sequence Length = 1517 Score = 470 bits (237), Expect = e-129 Identities = 336/369 (91%) Strand = Plus / Minus Query: 175 gatgttatgaccagcaggcccagcgcgccaatcagaaggtacttaataatcggcttctca 234 |||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||||| Sbjct: 778 gatgttataaccagtaggcccagcgcgccgatcagaaggtacttaataattggcttctca 719 Query: 235 gtcatcacaatagtaacccacccaacatatggtagatagcctacagcccgtcccataatg 294 ||||| | ||| |||||||| ||||||||||| ||| | || ||||| || |||||||| Sbjct: 718 gtcatgataattgtaacccatccaacatatggcagaaaaccaacagctcgccccataata 659 Query: 295 tgatgcttctgaagccaaagctgcccttgtgcatacaaaagtcggtcatccccaaaatta 354 ||||| | |||||||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct: 658 tgatgttgctgaagccaaagctgcccatgtgcatacagaagtcggtcatccccaaaattg 599 Query: 355 ttatcacctttcgtgaggatatcaacttctccactttcttggcgttcatgaaccttaatc 414 ||||||||||| |||||||| ||||||||| |||| || ||||||||||||||||| ||| Sbjct: 598 ttatcaccttttgtgaggatgtcaacttctgcactctcctggcgttcatgaaccttgatc 539 Query: 415 acacggtgaacaattggaatttcacggccatcaatattaaaaacaactatttctccagtg 474 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 538 acacggtgaacaattggaatttcacggccatcaacattaaaaacaactatttctccagtg 479 Query: 475 cggataggatcttggctcatgtgcaaaaacagaatatcaccccttttaaatccaggctcc 534 |||||||| |||| |||||||||||||||||| || ||||| |||||||||||||| ||| Sbjct: 478 cggatagggtctttgctcatgtgcaaaaacaggatgtcacctcttttaaatccaggttcc 419 Query: 535 atgctacca 543 ||||||||| Sbjct: 418 atgctacca 410
>dbj|AK106215.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-H01, full insert sequence Length = 1063 Score = 470 bits (237), Expect = e-129 Identities = 336/369 (91%) Strand = Plus / Minus Query: 175 gatgttatgaccagcaggcccagcgcgccaatcagaaggtacttaataatcggcttctca 234 |||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||||| Sbjct: 767 gatgttataaccagtaggcccagcgcgccgatcagaaggtacttaataattggcttctca 708 Query: 235 gtcatcacaatagtaacccacccaacatatggtagatagcctacagcccgtcccataatg 294 ||||| | ||| |||||||| ||||||||||| ||| | || ||||| || |||||||| Sbjct: 707 gtcatgataattgtaacccatccaacatatggcagaaaaccaacagctcgccccataata 648 Query: 295 tgatgcttctgaagccaaagctgcccttgtgcatacaaaagtcggtcatccccaaaatta 354 ||||| | |||||||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct: 647 tgatgttgctgaagccaaagctgcccatgtgcatacagaagtcggtcatccccaaaattg 588 Query: 355 ttatcacctttcgtgaggatatcaacttctccactttcttggcgttcatgaaccttaatc 414 ||||||||||| |||||||| ||||||||| |||| || ||||||||||||||||| ||| Sbjct: 587 ttatcaccttttgtgaggatgtcaacttctgcactctcctggcgttcatgaaccttgatc 528 Query: 415 acacggtgaacaattggaatttcacggccatcaatattaaaaacaactatttctccagtg 474 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 527 acacggtgaacaattggaatttcacggccatcaacattaaaaacaactatttctccagtg 468 Query: 475 cggataggatcttggctcatgtgcaaaaacagaatatcaccccttttaaatccaggctcc 534 |||||||| |||| |||||||||||||||||| || ||||| |||||||||||||| ||| Sbjct: 467 cggatagggtctttgctcatgtgcaaaaacaggatgtcacctcttttaaatccaggttcc 408 Query: 535 atgctacca 543 ||||||||| Sbjct: 407 atgctacca 399
>dbj|AK102635.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033099N11, full insert sequence Length = 1065 Score = 470 bits (237), Expect = e-129 Identities = 336/369 (91%) Strand = Plus / Minus Query: 175 gatgttatgaccagcaggcccagcgcgccaatcagaaggtacttaataatcggcttctca 234 |||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||||| Sbjct: 769 gatgttataaccagtaggcccagcgcgccgatcagaaggtacttaataattggcttctca 710 Query: 235 gtcatcacaatagtaacccacccaacatatggtagatagcctacagcccgtcccataatg 294 ||||| | ||| |||||||| ||||||||||| ||| | || ||||| || |||||||| Sbjct: 709 gtcatgataattgtaacccatccaacatatggcagaaaaccaacagctcgccccataata 650 Query: 295 tgatgcttctgaagccaaagctgcccttgtgcatacaaaagtcggtcatccccaaaatta 354 ||||| | |||||||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct: 649 tgatgttgctgaagccaaagctgcccatgtgcatacagaagtcggtcatccccaaaattg 590 Query: 355 ttatcacctttcgtgaggatatcaacttctccactttcttggcgttcatgaaccttaatc 414 ||||||||||| |||||||| ||||||||| |||| || ||||||||||||||||| ||| Sbjct: 589 ttatcaccttttgtgaggatgtcaacttctgcactctcctggcgttcatgaaccttgatc 530 Query: 415 acacggtgaacaattggaatttcacggccatcaatattaaaaacaactatttctccagtg 474 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 529 acacggtgaacaattggaatttcacggccatcaacattaaaaacaactatttctccagtg 470 Query: 475 cggataggatcttggctcatgtgcaaaaacagaatatcaccccttttaaatccaggctcc 534 |||||||| |||| |||||||||||||||||| || ||||| |||||||||||||| ||| Sbjct: 469 cggatagggtctttgctcatgtgcaaaaacaggatgtcacctcttttaaatccaggttcc 410 Query: 535 atgctacca 543 ||||||||| Sbjct: 409 atgctacca 401
>dbj|AK058911.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-G10, full insert sequence Length = 1083 Score = 470 bits (237), Expect = e-129 Identities = 336/369 (91%) Strand = Plus / Minus Query: 175 gatgttatgaccagcaggcccagcgcgccaatcagaaggtacttaataatcggcttctca 234 |||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||||| Sbjct: 800 gatgttataaccagtaggcccagcgcgccgatcagaaggtacttaataattggcttctca 741 Query: 235 gtcatcacaatagtaacccacccaacatatggtagatagcctacagcccgtcccataatg 294 ||||| | ||| |||||||| ||||||||||| ||| | || ||||| || |||||||| Sbjct: 740 gtcatgataattgtaacccatccaacatatggcagaaaaccaacagctcgccccataata 681 Query: 295 tgatgcttctgaagccaaagctgcccttgtgcatacaaaagtcggtcatccccaaaatta 354 ||||| | |||||||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct: 680 tgatgttgctgaagccaaagctgcccatgtgcatacagaagtcggtcatccccaaaattg 621 Query: 355 ttatcacctttcgtgaggatatcaacttctccactttcttggcgttcatgaaccttaatc 414 ||||||||||| |||||||| ||||||||| |||| || ||||||||||||||||| ||| Sbjct: 620 ttatcaccttttgtgaggatgtcaacttctgcactctcctggcgttcatgaaccttgatc 561 Query: 415 acacggtgaacaattggaatttcacggccatcaatattaaaaacaactatttctccagtg 474 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 560 acacggtgaacaattggaatttcacggccatcaacattaaaaacaactatttctccagtg 501 Query: 475 cggataggatcttggctcatgtgcaaaaacagaatatcaccccttttaaatccaggctcc 534 |||||||| |||| |||||||||||||||||| || ||||| |||||||||||||| ||| Sbjct: 500 cggatagggtctttgctcatgtgcaaaaacaggatgtcacctcttttaaatccaggttcc 441 Query: 535 atgctacca 543 ||||||||| Sbjct: 440 atgctacca 432
>dbj|AK071238.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023085B09, full insert sequence Length = 1035 Score = 430 bits (217), Expect = e-117 Identities = 337/377 (89%) Strand = Plus / Minus Query: 167 actctttcgatgttatgaccagcaggcccagcgcgccaatcagaaggtacttaataatcg 226 ||||||||||||| |||||||||| |||||| ||||| || || |||||||| |||| | Sbjct: 632 actctttcgatgtaatgaccagcaagcccagagcgccgatgagcaggtactttataaatg 573 Query: 227 gcttctcagtcatcacaatagtaacccacccaacatatggtagatagcctacagcccgtc 286 | ||||||||||| | || ||||||||||| |||||||| ||| ||||||||||||||| Sbjct: 572 gtttctcagtcatgatgattgtaacccacccgacatatggaagaaagcctacagcccgtc 513 Query: 287 ccataatgtgatgcttctgaagccaaagctgcccttgtgcatacaaaagtcggtcatccc 346 ||||||||||||| | ||||||||||||||||| |||||||| | ||| ||||| |||| Sbjct: 512 ccataatgtgatgttggtgaagccaaagctgcccatgtgcataaagaagacggtcgtccc 453 Query: 347 caaaattattatcacctttcgtgaggatatcaacttctccactttcttggcgttcatgaa 406 ||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||| | Sbjct: 452 caaaattattatcacctttcgtgaggatatcaacttcagcactttcctcgcgttcatgga 393 Query: 407 ccttaatcacacggtgaacaattggaatttcacggccatcaatattaaaaacaactattt 466 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| | Sbjct: 392 ccttaatcacacggtgaacaattggaatttcacggccatcaatgttgaaaacaactatct 333 Query: 467 ctccagtgcggataggatcttggctcatgtgcaaaaacagaatatcaccccttttaaatc 526 |||| |||||||||||||||| ||||||||| | ||| || ||||| ||||||||||||| Sbjct: 332 ctcctgtgcggataggatctttgctcatgtgtagaaaaaggatatcgccccttttaaatc 273 Query: 527 caggctccatgctacca 543 ||||||||||||||||| Sbjct: 272 caggctccatgctacca 256
>gb|AY103758.1| Zea mays PCO086041 mRNA sequence Length = 1028 Score = 385 bits (194), Expect = e-103 Identities = 329/374 (87%) Strand = Plus / Minus Query: 169 tctttcgatgttatgaccagcaggcccagcgcgccaatcagaaggtacttaataatcggc 228 |||||||| ||||||||||||| |||||| || |||||||| ||||||||||||| || Sbjct: 687 tctttcgacgttatgaccagcaagcccagtgcaccaatcagcaggtacttaataaatggt 628 Query: 229 ttctcagtcatcacaatagtaacccacccaacatatggtagatagcctacagcccgtccc 288 ||||||||||| | ||| |||| ||| ||||||||||| || ||||| || || |||||| Sbjct: 627 ttctcagtcatgataattgtaatccagccaacatatggaaggtagcccaccgcacgtccc 568 Query: 289 ataatgtgatgcttctgaagccaaagctgcccttgtgcatacaaaagtcggtcatcccca 348 ||||||||||| | ||| |||||||||||||| |||||||| || ||||||||||||||| Sbjct: 567 ataatgtgatgttgctggagccaaagctgcccatgtgcatataatagtcggtcatcccca 508 Query: 349 aaattattatcacctttcgtgaggatatcaacttctccactttcttggcgttcatgaacc 408 |||||||| |||||||| |||||||| || |||||| || | || || |||||||| ||| Sbjct: 507 aaattattgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatggacc 448 Query: 409 ttaatcacacggtgaacaattggaatttcacggccatcaatattaaaaacaactatttct 468 |||||||| ||||||||||||||||| ||||| ||||| | ||| ||||||||||||||| Sbjct: 447 ttaatcactcggtgaacaattggaatctcacgaccatcgacattgaaaacaactatttct 388 Query: 469 ccagtgcggataggatcttggctcatgtgcaaaaacagaatatcaccccttttaaatcca 528 || ||||| |||||||||| |||||| ||||||||||| ||||||||||||||||||||| Sbjct: 387 cctgtgcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaatcca 328 Query: 529 ggctccatgctacc 542 |||||||||||||| Sbjct: 327 ggctccatgctacc 314
>gb|BT018041.1| Zea mays clone EL01N0531A03.c mRNA sequence Length = 869 Score = 377 bits (190), Expect = e-101 Identities = 328/374 (87%) Strand = Plus / Minus Query: 169 tctttcgatgttatgaccagcaggcccagcgcgccaatcagaaggtacttaataatcggc 228 |||||||| ||||||||||||| ||||| ||||||||||| ||||||||||||| || Sbjct: 654 tctttcgacgttatgaccagcaaacccagtgcgccaatcagcaggtacttaataaatggt 595 Query: 229 ttctcagtcatcacaatagtaacccacccaacatatggtagatagcctacagcccgtccc 288 ||||||||||| | ||| |||||||| ||||||||||| || ||||| || || |||||| Sbjct: 594 ttctcagtcatgataattgtaacccagccaacatatggaaggtagcccaccgcacgtccc 535 Query: 289 ataatgtgatgcttctgaagccaaagctgcccttgtgcatacaaaagtcggtcatcccca 348 |||||||| || | ||| ||||||||||| || |||||||| || ||||||||||||||| Sbjct: 534 ataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatcccca 475 Query: 349 aaattattatcacctttcgtgaggatatcaacttctccactttcttggcgttcatgaacc 408 |||||||| |||||||| |||||||| || |||||| || | || || |||||||| ||| Sbjct: 474 aaattattgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatggacc 415 Query: 409 ttaatcacacggtgaacaattggaatttcacggccatcaatattaaaaacaactatttct 468 |||||||| ||||||||||||||||| ||||| ||||| | ||| ||||||||||||||| Sbjct: 414 ttaatcactcggtgaacaattggaatctcacgaccatcgacattgaaaacaactatttct 355 Query: 469 ccagtgcggataggatcttggctcatgtgcaaaaacagaatatcaccccttttaaatcca 528 || ||||| |||||||||| |||||| ||||||||||| ||||||||||||||||||||| Sbjct: 354 cctgtgcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaatcca 295 Query: 529 ggctccatgctacc 542 |||||||||||||| Sbjct: 294 ggctccatgctacc 281
>ref|NM_185778.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 651 Score = 262 bits (132), Expect = 1e-66 Identities = 171/184 (92%) Strand = Plus / Minus Query: 360 acctttcgtgaggatatcaacttctccactttcttggcgttcatgaaccttaatcacacg 419 |||||| |||||||| ||||||||| |||| || ||||||||||||||||| |||||||| Sbjct: 402 accttttgtgaggatgtcaacttctgcactctcctggcgttcatgaaccttgatcacacg 343 Query: 420 gtgaacaattggaatttcacggccatcaatattaaaaacaactatttctccagtgcggat 479 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 342 gtgaacaattggaatttcacggccatcaacattaaaaacaactatttctccagtgcggat 283 Query: 480 aggatcttggctcatgtgcaaaaacagaatatcaccccttttaaatccaggctccatgct 539 ||| |||| |||||||||||||||||| || ||||| |||||||||||||| |||||||| Sbjct: 282 agggtctttgctcatgtgcaaaaacaggatgtcacctcttttaaatccaggttccatgct 223 Query: 540 acca 543 |||| Sbjct: 222 acca 219 Score = 214 bits (108), Expect = 2e-52 Identities = 168/188 (89%) Strand = Plus / Minus Query: 175 gatgttatgaccagcaggcccagcgcgccaatcagaaggtacttaataatcggcttctca 234 |||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||||| Sbjct: 641 gatgttataaccagtaggcccagcgcgccgatcagaaggtacttaataattggcttctca 582 Query: 235 gtcatcacaatagtaacccacccaacatatggtagatagcctacagcccgtcccataatg 294 ||||| | ||| |||||||| ||||||||||| ||| | || ||||| || |||||||| Sbjct: 581 gtcatgataattgtaacccatccaacatatggcagaaaaccaacagctcgccccataata 522 Query: 295 tgatgcttctgaagccaaagctgcccttgtgcatacaaaagtcggtcatccccaaaatta 354 ||||| | |||||||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct: 521 tgatgttgctgaagccaaagctgcccatgtgcatacagaagtcggtcatccccaaaattg 462 Query: 355 ttatcacc 362 |||||||| Sbjct: 461 ttatcacc 454
>dbj|AK099911.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116D13, full insert sequence Length = 1489 Score = 139 bits (70), Expect = 1e-29 Identities = 261/324 (80%), Gaps = 3/324 (0%) Strand = Plus / Minus Query: 216 cttaataatcggcttctcagtcatcacaatagtaacccacccaacatatggtagatagcc 275 |||||||| || |||||||||||||| | || ||||||||| | | |||||||| || Sbjct: 559 cttaataactggtttctcagtcatcaccaatgtcacccacccagctttgggtagataccc 500 Query: 276 tacagcccgtcccataatgtgatgcttctgaagccaaagctgcccttgtgcatacaaaag 335 || ||||||||||| |||||||| | |||||||||||||||||| |||| || | || Sbjct: 499 tatggcccgtcccatgatgtgatgttgctgaagccaaagctgcccatgtgtgtaaagaat 440 Query: 336 tcggtcatccccaaaattattatcacctttcgtgaggatatcaacttctccactttcttg 395 |||||| ||| | ||| || |||||||| ||||||| |||||||| | || | || | Sbjct: 439 tcggtcgtccataggattgttgtcaccttttgtgaggaaatcaacttgtgcattatcccg 380 Query: 396 gcgttcatgaaccttaatcacacggtgaacaattggaatttcacggccatcaatattaaa 455 ||||| ||||||| ||| || || || || ||||||||||||||||||||| || || Sbjct: 379 tcgttcgtgaacctcaataacgcgatggacgattggaatttcacggccatca---ttgaa 323 Query: 456 aacaactatttctccagtgcggataggatcttggctcatgtgcaaaaacagaatatcacc 515 ||||||||| ||||| || || ||||| | || |||||| ||||||||||| ||||| || Sbjct: 322 aacaactatatctcctgttcgtatagggtgtttgctcatttgcaaaaacaggatatcccc 263 Query: 516 ccttttaaatccaggctccatgct 539 ||||| ||||||| || ||||||| Sbjct: 262 cctttcaaatccaagccccatgct 239
>gb|AC135915.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OSJNBa0082F22, complete sequence Length = 176038 Score = 115 bits (58), Expect = 2e-22 Identities = 82/90 (91%) Strand = Plus / Minus Query: 274 cctacagcccgtcccataatgtgatgcttctgaagccaaagctgcccttgtgcatacaaa 333 |||||||||||||||||||||||||| | ||||||||||||||||| |||||||| | | Sbjct: 114605 cctacagcccgtcccataatgtgatgttggtgaagccaaagctgcccatgtgcataaaga 114546 Query: 334 agtcggtcatccccaaaattattatcacct 363 || ||||| ||||||||||||||||||||| Sbjct: 114545 agacggtcgtccccaaaattattatcacct 114516 Score = 75.8 bits (38), Expect = 1e-10 Identities = 38/38 (100%) Strand = Plus / Minus Query: 406 accttaatcacacggtgaacaattggaatttcacggcc 443 |||||||||||||||||||||||||||||||||||||| Sbjct: 114211 accttaatcacacggtgaacaattggaatttcacggcc 114174 Score = 69.9 bits (35), Expect = 8e-09 Identities = 50/55 (90%) Strand = Plus / Minus Query: 443 catcaatattaaaaacaactatttctccagtgcggataggatcttggctcatgtg 497 ||||||| || ||||||||||| ||||| |||||||||||||||| ||||||||| Sbjct: 114036 catcaatgttgaaaacaactatctctcctgtgcggataggatctttgctcatgtg 113982 Score = 60.0 bits (30), Expect = 8e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 360 acctttcgtgaggatatcaacttctccactttcttggcgttcatgaacct 409 |||||||||||||||||||||||| ||||||| | ||||||||| |||| Sbjct: 114376 acctttcgtgaggatatcaacttcagcactttcctcgcgttcatggacct 114327 Score = 58.0 bits (29), Expect = 3e-05 Identities = 29/29 (100%) Strand = Plus / Minus Query: 515 cccttttaaatccaggctccatgctacca 543 ||||||||||||||||||||||||||||| Sbjct: 112594 cccttttaaatccaggctccatgctacca 112566 Score = 54.0 bits (27), Expect = 5e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 167 actctttcgatgttatgaccagcaggcccagcgcgccaatcagaaggtact 217 ||||||||||||| |||||||||| |||||| ||||| || || ||||||| Sbjct: 115056 actctttcgatgtaatgaccagcaagcccagagcgccgatgagcaggtact 115006
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 115 bits (58), Expect = 2e-22 Identities = 82/90 (91%) Strand = Plus / Minus Query: 274 cctacagcccgtcccataatgtgatgcttctgaagccaaagctgcccttgtgcatacaaa 333 |||||||||||||||||||||||||| | ||||||||||||||||| |||||||| | | Sbjct: 13151828 cctacagcccgtcccataatgtgatgttggtgaagccaaagctgcccatgtgcataaaga 13151769 Query: 334 agtcggtcatccccaaaattattatcacct 363 || ||||| ||||||||||||||||||||| Sbjct: 13151768 agacggtcgtccccaaaattattatcacct 13151739 Score = 75.8 bits (38), Expect = 1e-10 Identities = 38/38 (100%) Strand = Plus / Minus Query: 406 accttaatcacacggtgaacaattggaatttcacggcc 443 |||||||||||||||||||||||||||||||||||||| Sbjct: 13151434 accttaatcacacggtgaacaattggaatttcacggcc 13151397 Score = 69.9 bits (35), Expect = 8e-09 Identities = 50/55 (90%) Strand = Plus / Minus Query: 443 catcaatattaaaaacaactatttctccagtgcggataggatcttggctcatgtg 497 ||||||| || ||||||||||| ||||| |||||||||||||||| ||||||||| Sbjct: 13151259 catcaatgttgaaaacaactatctctcctgtgcggataggatctttgctcatgtg 13151205 Score = 60.0 bits (30), Expect = 8e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 360 acctttcgtgaggatatcaacttctccactttcttggcgttcatgaacct 409 |||||||||||||||||||||||| ||||||| | ||||||||| |||| Sbjct: 13151599 acctttcgtgaggatatcaacttcagcactttcctcgcgttcatggacct 13151550 Score = 58.0 bits (29), Expect = 3e-05 Identities = 29/29 (100%) Strand = Plus / Minus Query: 515 cccttttaaatccaggctccatgctacca 543 ||||||||||||||||||||||||||||| Sbjct: 13149817 cccttttaaatccaggctccatgctacca 13149789 Score = 54.0 bits (27), Expect = 5e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 167 actctttcgatgttatgaccagcaggcccagcgcgccaatcagaaggtact 217 ||||||||||||| |||||||||| |||||| ||||| || || ||||||| Sbjct: 13152279 actctttcgatgtaatgaccagcaagcccagagcgccgatgagcaggtact 13152229
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 109 bits (55), Expect = 1e-20 Identities = 79/87 (90%) Strand = Plus / Plus Query: 277 acagcccgtcccataatgtgatgcttctgaagccaaagctgcccttgtgcatacaaaagt 336 ||||| || |||||||| ||||| | |||||||||||||||||| |||||||||| |||| Sbjct: 9268923 acagctcgccccataatatgatgttgctgaagccaaagctgcccatgtgcatacagaagt 9268982 Query: 337 cggtcatccccaaaattattatcacct 363 ||||||||||||||||| ||||||||| Sbjct: 9268983 cggtcatccccaaaattgttatcacct 9269009 Score = 107 bits (54), Expect = 4e-20 Identities = 69/74 (93%) Strand = Plus / Plus Query: 443 catcaatattaaaaacaactatttctccagtgcggataggatcttggctcatgtgcaaaa 502 |||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct: 9269437 catcaacattaaaaacaactatttctccagtgcggatagggtctttgctcatgtgcaaaa 9269496 Query: 503 acagaatatcaccc 516 |||| || |||||| Sbjct: 9269497 acaggatgtcaccc 9269510 Score = 67.9 bits (34), Expect = 3e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 406 accttaatcacacggtgaacaattggaatttcacggcc 443 ||||| |||||||||||||||||||||||||||||||| Sbjct: 9269302 accttgatcacacggtgaacaattggaatttcacggcc 9269339 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 216 cttaataatcggcttctcagtcatcacaatagtaacccacccaacatatgg 266 ||||||||| |||||||||||||| | ||| |||||||| ||||||||||| Sbjct: 9268771 cttaataattggcttctcagtcatgataattgtaacccatccaacatatgg 9268821 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 175 gatgttatgaccagcaggcccagcgcgccaatcagaaggtact 217 |||||||| ||||| |||||||||||||| ||||||||||||| Sbjct: 9268517 gatgttataaccagtaggcccagcgcgccgatcagaaggtact 9268559 Score = 60.0 bits (30), Expect = 8e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 360 acctttcgtgaggatatcaacttctccactttcttggcgttcatgaacct 409 |||||| |||||||| ||||||||| |||| || |||||||||||||||| Sbjct: 9269160 accttttgtgaggatgtcaacttctgcactctcctggcgttcatgaacct 9269209 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 517 cttttaaatccaggctccatgctacca 543 |||||||||||||| |||||||||||| Sbjct: 9269947 cttttaaatccaggttccatgctacca 9269973
>dbj|AP005813.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0676F10 Length = 142510 Score = 109 bits (55), Expect = 1e-20 Identities = 79/87 (90%) Strand = Plus / Plus Query: 277 acagcccgtcccataatgtgatgcttctgaagccaaagctgcccttgtgcatacaaaagt 336 ||||| || |||||||| ||||| | |||||||||||||||||| |||||||||| |||| Sbjct: 36264 acagctcgccccataatatgatgttgctgaagccaaagctgcccatgtgcatacagaagt 36323 Query: 337 cggtcatccccaaaattattatcacct 363 ||||||||||||||||| ||||||||| Sbjct: 36324 cggtcatccccaaaattgttatcacct 36350 Score = 107 bits (54), Expect = 4e-20 Identities = 69/74 (93%) Strand = Plus / Plus Query: 443 catcaatattaaaaacaactatttctccagtgcggataggatcttggctcatgtgcaaaa 502 |||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct: 36778 catcaacattaaaaacaactatttctccagtgcggatagggtctttgctcatgtgcaaaa 36837 Query: 503 acagaatatcaccc 516 |||| || |||||| Sbjct: 36838 acaggatgtcaccc 36851 Score = 67.9 bits (34), Expect = 3e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 406 accttaatcacacggtgaacaattggaatttcacggcc 443 ||||| |||||||||||||||||||||||||||||||| Sbjct: 36643 accttgatcacacggtgaacaattggaatttcacggcc 36680 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 216 cttaataatcggcttctcagtcatcacaatagtaacccacccaacatatgg 266 ||||||||| |||||||||||||| | ||| |||||||| ||||||||||| Sbjct: 36112 cttaataattggcttctcagtcatgataattgtaacccatccaacatatgg 36162 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 175 gatgttatgaccagcaggcccagcgcgccaatcagaaggtact 217 |||||||| ||||| |||||||||||||| ||||||||||||| Sbjct: 35858 gatgttataaccagtaggcccagcgcgccgatcagaaggtact 35900 Score = 60.0 bits (30), Expect = 8e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 360 acctttcgtgaggatatcaacttctccactttcttggcgttcatgaacct 409 |||||| |||||||| ||||||||| |||| || |||||||||||||||| Sbjct: 36501 accttttgtgaggatgtcaacttctgcactctcctggcgttcatgaacct 36550 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 517 cttttaaatccaggctccatgctacca 543 |||||||||||||| |||||||||||| Sbjct: 37288 cttttaaatccaggttccatgctacca 37314
>ref|NM_104138.2| Arabidopsis thaliana peptidase AT1G52600 mRNA, complete cds Length = 818 Score = 103 bits (52), Expect = 6e-19 Identities = 190/236 (80%) Strand = Plus / Minus Query: 304 tgaagccaaagctgcccttgtgcatacaaaagtcggtcatccccaaaattattatcacct 363 |||||||||||||| |||| ||||||| ||||| |||||| ||| | ||||| |||||| Sbjct: 491 tgaagccaaagctgtccttcagcatacagaagtctgtcatctccatagttattgtcacct 432 Query: 364 ttcgtgaggatatcaacttctccactttcttggcgttcatgaaccttaatcacacggtga 423 ||||| || | |||||||||||| | | || | ||| ||||||||||| ||||| || Sbjct: 431 ttcgttagaacatcaacttctcctgtattttccctttcgtgaaccttaatgacacgatgg 372 Query: 424 acaattggaatttcacggccatcaatattaaaaacaactatttctccagtgcggatagga 483 ||||| ||||| ||||| ||||||| ||| |||||||| ||||| || | || || || Sbjct: 371 acaatgggaatatcacgaccatcaacattgaaaacaacaatttcacctgctcgaatcggg 312 Query: 484 tcttggctcatgtgcaaaaacagaatatcaccccttttaaatccaggctccatgct 539 |||| ||||||||||| |||| ||||| ||||| ||||| || || |||||||| Sbjct: 311 tctttactcatgtgcaagaacaatatatcccccctcttaaaaccgggttccatgct 256
>gb|AY096703.1| Arabidopsis thaliana putative signal peptidase subunit (At1g52600) mRNA, complete cds Length = 574 Score = 103 bits (52), Expect = 6e-19 Identities = 190/236 (80%) Strand = Plus / Minus Query: 304 tgaagccaaagctgcccttgtgcatacaaaagtcggtcatccccaaaattattatcacct 363 |||||||||||||| |||| ||||||| ||||| |||||| ||| | ||||| |||||| Sbjct: 404 tgaagccaaagctgtccttcagcatacagaagtctgtcatctccatagttattgtcacct 345 Query: 364 ttcgtgaggatatcaacttctccactttcttggcgttcatgaaccttaatcacacggtga 423 ||||| || | |||||||||||| | | || | ||| ||||||||||| ||||| || Sbjct: 344 ttcgttagaacatcaacttctcctgtattttccctttcgtgaaccttaatgacacgatgg 285 Query: 424 acaattggaatttcacggccatcaatattaaaaacaactatttctccagtgcggatagga 483 ||||| ||||| ||||| ||||||| ||| |||||||| ||||| || | || || || Sbjct: 284 acaatgggaatatcacgaccatcaacattgaaaacaacaatttcacctgctcgaatcggg 225 Query: 484 tcttggctcatgtgcaaaaacagaatatcaccccttttaaatccaggctccatgct 539 |||| ||||||||||| |||| ||||| ||||| ||||| || || |||||||| Sbjct: 224 tctttactcatgtgcaagaacaatatatcccccctcttaaaaccgggttccatgct 169
>gb|AY064032.1| Arabidopsis thaliana putative signal peptidase subunit (At1g52600) mRNA, complete cds Length = 825 Score = 103 bits (52), Expect = 6e-19 Identities = 190/236 (80%) Strand = Plus / Minus Query: 304 tgaagccaaagctgcccttgtgcatacaaaagtcggtcatccccaaaattattatcacct 363 |||||||||||||| |||| ||||||| ||||| |||||| ||| | ||||| |||||| Sbjct: 490 tgaagccaaagctgtccttcagcatacagaagtctgtcatctccatagttattgtcacct 431 Query: 364 ttcgtgaggatatcaacttctccactttcttggcgttcatgaaccttaatcacacggtga 423 ||||| || | |||||||||||| | | || | ||| ||||||||||| ||||| || Sbjct: 430 ttcgttagaacatcaacttctcctgtattttccctttcgtgaaccttaatgacacgatgg 371 Query: 424 acaattggaatttcacggccatcaatattaaaaacaactatttctccagtgcggatagga 483 ||||| ||||| ||||| ||||||| ||| |||||||| ||||| || | || || || Sbjct: 370 acaatgggaatatcacgaccatcaacattgaaaacaacaatttcacctgctcgaatcggg 311 Query: 484 tcttggctcatgtgcaaaaacagaatatcaccccttttaaatccaggctccatgct 539 |||| ||||||||||| |||| ||||| ||||| ||||| || || |||||||| Sbjct: 310 tctttactcatgtgcaagaacaatatatcccccctcttaaaaccgggttccatgct 255
>gb|AY084305.1| Arabidopsis thaliana clone 103157 mRNA, complete sequence Length = 691 Score = 103 bits (52), Expect = 6e-19 Identities = 190/236 (80%) Strand = Plus / Minus Query: 304 tgaagccaaagctgcccttgtgcatacaaaagtcggtcatccccaaaattattatcacct 363 |||||||||||||| |||| ||||||| ||||| |||||| ||| | ||||| |||||| Sbjct: 490 tgaagccaaagctgtccttcagcatacagaagtctgtcatctccatagttattgtcacct 431 Query: 364 ttcgtgaggatatcaacttctccactttcttggcgttcatgaaccttaatcacacggtga 423 ||||| || | |||||||||||| | | || | ||| ||||||||||| ||||| || Sbjct: 430 ttcgttagaacatcaacttctcctgtattttccctttcgtgaaccttaatgacacgatgg 371 Query: 424 acaattggaatttcacggccatcaatattaaaaacaactatttctccagtgcggatagga 483 ||||| ||||| ||||| ||||||| ||| |||||||| ||||| || | || || || Sbjct: 370 acaatgggaatatcacgaccatcaacattgaaaacaacaatttcacctgctcgaatcggg 311 Query: 484 tcttggctcatgtgcaaaaacagaatatcaccccttttaaatccaggctccatgct 539 |||| ||||||||||| |||| ||||| ||||| ||||| || || |||||||| Sbjct: 310 tctttactcatgtgcaagaacaatatatcccccctcttaaaaccgggttccatgct 255
>dbj|AK220581.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-87-D04 Length = 783 Score = 95.6 bits (48), Expect = 1e-16 Identities = 135/164 (82%) Strand = Plus / Minus Query: 304 tgaagccaaagctgcccttgtgcatacaaaagtcggtcatccccaaaattattatcacct 363 |||||||||||||| |||| ||||||| ||||| |||||| ||| | ||||| |||||| Sbjct: 490 tgaagccaaagctgtccttcagcatacagaagtctgtcatctccatagttattgtcacct 431 Query: 364 ttcgtgaggatatcaacttctccactttcttggcgttcatgaaccttaatcacacggtga 423 ||||| || | |||||||||||| | | || | ||| ||||||||||| ||||| || Sbjct: 430 ttcgttagaacatcaacttctcctgtattttccctttcgtgaaccttaatgacacgatgg 371 Query: 424 acaattggaatttcacggccatcaatattaaaaacaactatttc 467 ||||| ||||| ||||| ||||||| ||| |||||||| ||||| Sbjct: 370 acaatgggaatatcacgaccatcaacattgaaaacaacaatttc 327
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 60.0 bits (30), Expect = 8e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 280 gcccgtcccataatgtgatgcttctgaagccaaagctgcccttgtg 325 ||||||||||| |||||||| | |||||||||||||||||| |||| Sbjct: 35595331 gcccgtcccatgatgtgatgttgctgaagccaaagctgcccatgtg 35595376 Score = 46.1 bits (23), Expect = 0.12 Identities = 50/59 (84%) Strand = Plus / Plus Query: 454 aaaacaactatttctccagtgcggataggatcttggctcatgtgcaaaaacagaatatc 512 ||||||||||| ||||| || || ||||| | || |||||| ||||||||||| ||||| Sbjct: 35595952 aaaacaactatatctcctgttcgtatagggtgtttgctcatttgcaaaaacaggatatc 35596010
>dbj|AP004776.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0452F04 Length = 171421 Score = 60.0 bits (30), Expect = 8e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 280 gcccgtcccataatgtgatgcttctgaagccaaagctgcccttgtg 325 ||||||||||| |||||||| | |||||||||||||||||| |||| Sbjct: 111723 gcccgtcccatgatgtgatgttgctgaagccaaagctgcccatgtg 111768 Score = 46.1 bits (23), Expect = 0.12 Identities = 50/59 (84%) Strand = Plus / Plus Query: 454 aaaacaactatttctccagtgcggataggatcttggctcatgtgcaaaaacagaatatc 512 ||||||||||| ||||| || || ||||| | || |||||| ||||||||||| ||||| Sbjct: 112344 aaaacaactatatctcctgttcgtatagggtgtttgctcatttgcaaaaacaggatatc 112402
>gb|AC008016.2|F6D8 Arabidopsis thaliana chromosome 1 BAC F6D8 sequence, complete sequence Length = 117737 Score = 48.1 bits (24), Expect = 0.030 Identities = 51/60 (85%) Strand = Plus / Plus Query: 304 tgaagccaaagctgcccttgtgcatacaaaagtcggtcatccccaaaattattatcacct 363 |||||||||||||| |||| ||||||| ||||| |||||| ||| | ||||| |||||| Sbjct: 53660 tgaagccaaagctgtccttcagcatacagaagtctgtcatctccatagttattgtcacct 53719
>ref|XM_512154.1| PREDICTED: Pan troglodytes similar to microsomal signal peptidase subunit (LOC455447), mRNA Length = 451 Score = 44.1 bits (22), Expect = 0.47 Identities = 61/74 (82%) Strand = Plus / Minus Query: 399 ttcatgaaccttaatcacacggtgaacaattggaatttcacggccatcaatattaaaaac 458 ||||||||| || || || | |||||| |||||||| || || || |||| |||||||| Sbjct: 437 ttcatgaactttgattactctgtgaactattggaatgtctcgtccttcaactttaaaaac 378 Query: 459 aactatttctccag 472 ||||||||| |||| Sbjct: 377 aactatttcaccag 364
>ref|NM_033280.1| Homo sapiens SEC11-like 3 (S. cerevisiae) (SEC11L3), mRNA Length = 794 Score = 44.1 bits (22), Expect = 0.47 Identities = 61/74 (82%) Strand = Plus / Minus Query: 399 ttcatgaaccttaatcacacggtgaacaattggaatttcacggccatcaatattaaaaac 458 ||||||||| || || || | |||||| |||||||| || || || |||| |||||||| Sbjct: 402 ttcatgaactttgattactctgtgaactattggaatgtctcgtccttcaactttaaaaac 343 Query: 459 aactatttctccag 472 ||||||||| |||| Sbjct: 342 aactatttcaccag 329
>emb|CR858452.1| Pongo pygmaeus mRNA; cDNA DKFZp469M0613 (from clone DKFZp469M0613) Length = 864 Score = 44.1 bits (22), Expect = 0.47 Identities = 61/74 (82%) Strand = Plus / Minus Query: 399 ttcatgaaccttaatcacacggtgaacaattggaatttcacggccatcaatattaaaaac 458 ||||||||| || || || | |||||| |||||||| || || || |||| |||||||| Sbjct: 392 ttcatgaactttgattactctgtgaactattggaatgtctcgtccttcaactttaaaaac 333 Query: 459 aactatttctccag 472 ||||||||| |||| Sbjct: 332 aactatttcaccag 319
>gb|AC099842.2| Homo sapiens chromosome 11, clone RP11-747E23, complete sequence Length = 159274 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 301 ttctgaagccaaagctgccctt 322 |||||||||||||||||||||| Sbjct: 151854 ttctgaagccaaagctgccctt 151875
>gb|AC021241.10| Homo sapiens chromosome 18, clone RP11-350K6, complete sequence Length = 160748 Score = 44.1 bits (22), Expect = 0.47 Identities = 61/74 (82%) Strand = Plus / Minus Query: 399 ttcatgaaccttaatcacacggtgaacaattggaatttcacggccatcaatattaaaaac 458 ||||||||| || || || | |||||| |||||||| || || || |||| |||||||| Sbjct: 103644 ttcatgaactttgattactctgtgaactattggaatgtctcgtccttcaactttaaaaac 103585 Query: 459 aactatttctccag 472 ||||||||| |||| Sbjct: 103584 aactatttcaccag 103571
>gb|AC100768.2| Homo sapiens chromosome 11, clone RP11-945A11, complete sequence Length = 190183 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 301 ttctgaagccaaagctgccctt 322 |||||||||||||||||||||| Sbjct: 185872 ttctgaagccaaagctgccctt 185851
>gb|AC067859.7| Homo sapiens chromosome 18, clone RP11-569D6, complete sequence Length = 195609 Score = 44.1 bits (22), Expect = 0.47 Identities = 61/74 (82%) Strand = Plus / Minus Query: 399 ttcatgaaccttaatcacacggtgaacaattggaatttcacggccatcaatattaaaaac 458 ||||||||| || || || | |||||| |||||||| || || || |||| |||||||| Sbjct: 18480 ttcatgaactttgattactctgtgaactattggaatgtctcgtccttcaactttaaaaac 18421 Query: 459 aactatttctccag 472 ||||||||| |||| Sbjct: 18420 aactatttcaccag 18407
>gb|AF212233.1|AF212233 Homo sapiens microsomal signal peptidase subunit mRNA, complete cds Length = 794 Score = 44.1 bits (22), Expect = 0.47 Identities = 61/74 (82%) Strand = Plus / Minus Query: 399 ttcatgaaccttaatcacacggtgaacaattggaatttcacggccatcaatattaaaaac 458 ||||||||| || || || | |||||| |||||||| || || || |||| |||||||| Sbjct: 402 ttcatgaactttgattactctgtgaactattggaatgtctcgtccttcaactttaaaaac 343 Query: 459 aactatttctccag 472 ||||||||| |||| Sbjct: 342 aactatttcaccag 329
>gb|BC009703.1| Homo sapiens SEC11-like 3 (S. cerevisiae), mRNA (cDNA clone MGC:9299 IMAGE:3895819), complete cds Length = 782 Score = 44.1 bits (22), Expect = 0.47 Identities = 61/74 (82%) Strand = Plus / Minus Query: 399 ttcatgaaccttaatcacacggtgaacaattggaatttcacggccatcaatattaaaaac 458 ||||||||| || || || | |||||| |||||||| || || || |||| |||||||| Sbjct: 389 ttcatgaactttgattactctgtgaactattggaatgtctcgtccttcaactttaaaaac 330 Query: 459 aactatttctccag 472 ||||||||| |||| Sbjct: 329 aactatttcaccag 316
>gb|CP000025.1| Campylobacter jejuni RM1221, complete genome Length = 1777831 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 443 catcaatattaaaaacaactatttctcca 471 ||||||||| |||||||||||||| |||| Sbjct: 1225090 catcaatatcaaaaacaactatttttcca 1225118
>emb|AL139077.2|CJ11168X4 Campylobacter jejuni subsp. jejuni NCTC 11168 complete genome; segment 4/6 Length = 282183 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 443 catcaatattaaaaacaactatttctcca 471 ||||||||| |||||||||||||| |||| Sbjct: 164204 catcaatatcaaaaacaactatttttcca 164232
>emb|AJ000744.1|CJAJ744 Campylobacter jejuni gmk gene, partial Length = 300 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 443 catcaatattaaaaacaactatttctcca 471 ||||||||| |||||||||||||| |||| Sbjct: 236 catcaatatcaaaaacaactatttttcca 208
>gb|AC023904.10| Homo sapiens chromosome 10 clone RP11-369L1, complete sequence Length = 190712 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 376 tcaacttctccactttcttgg 396 ||||||||||||||||||||| Sbjct: 42368 tcaacttctccactttcttgg 42348
>dbj|AB005234.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBK5 Length = 89779 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 441 gccatcaatattaaaaacaac 461 ||||||||||||||||||||| Sbjct: 41009 gccatcaatattaaaaacaac 40989
>gb|AC117825.9| Mus musculus chromosome 18, clone RP24-80J4, complete sequence Length = 198559 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 517 cttttaaatccaggctccat 536 |||||||||||||||||||| Sbjct: 25908 cttttaaatccaggctccat 25889
>ref|NM_112441.3| Arabidopsis thaliana peptidase AT3G15710 mRNA, complete cds Length = 872 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 421 tgaacaattggaatttcacggccatcaa 448 |||||||| ||||||||||| ||||||| Sbjct: 410 tgaacaatgggaatttcacgaccatcaa 383
>gb|DQ008592.1| Escherichia coli serogroup O174 O antigen gene cluster, partial sequence Length = 5660 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 448 atattaaaaacaactatttctcca 471 ||||||||| |||||||||||||| Sbjct: 3254 atattaaaatcaactatttctcca 3277
>gb|BT015660.1| Arabidopsis thaliana At3g15710 gene, complete cds Length = 543 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 421 tgaacaattggaatttcacggccatcaa 448 |||||||| ||||||||||| ||||||| Sbjct: 287 tgaacaatgggaatttcacgaccatcaa 260
>gb|BT015149.1| Arabidopsis thaliana At3g15710 gene, complete cds Length = 805 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 421 tgaacaattggaatttcacggccatcaa 448 |||||||| ||||||||||| ||||||| Sbjct: 370 tgaacaatgggaatttcacgaccatcaa 343
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 tgaccagcaggcccagcgcg 201 |||||||||||||||||||| Sbjct: 2728368 tgaccagcaggcccagcgcg 2728349
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 tgaccagcaggcccagcgcg 201 |||||||||||||||||||| Sbjct: 3426292 tgaccagcaggcccagcgcg 3426311
>gb|AC115290.5| Mus musculus BAC clone RP23-65M10 from chromosome 10, complete sequence Length = 245623 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 tgtaggaacagataaaaata 71 |||||||||||||||||||| Sbjct: 122542 tgtaggaacagataaaaata 122561
>emb|AL354831.18| Human DNA sequence from clone RP11-188A23 on chromosome 13 Contains a novel gene and a CpG island, complete sequence Length = 144586 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 451 ttaaaaacaactatttctcc 470 |||||||||||||||||||| Sbjct: 95672 ttaaaaacaactatttctcc 95691
>gb|AC131886.5| Rattus norvegicus 4 BAC CH230-53A1 (Children's Hospital Oakland Research Institute) complete sequence Length = 222634 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 tgaagccaaagctgcccttg 323 |||||||||||||||||||| Sbjct: 153985 tgaagccaaagctgcccttg 154004
>emb|CR392356.5| Mouse DNA sequence from clone RP23-329D21 on chromosome 11 Contains a novel gene, the 5' end of the Dock2 gene for dedicator of cyto-kinesis 2 and a CpG island, complete sequence Length = 90351 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 tctcagtcatcacaatagta 249 |||||||||||||||||||| Sbjct: 28902 tctcagtcatcacaatagta 28921
>emb|CR382398.1| Plasmodium falciparum chromosome 6, complete sequence; segment 1/5 Length = 349418 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 447 aatattaaaaacaactattt 466 |||||||||||||||||||| Sbjct: 140676 aatattaaaaacaactattt 140657
>emb|AJ851481.1| Gallus gallus mRNA for hypothetical protein, clone 3m23 Length = 2096 Score = 40.1 bits (20), Expect = 7.4 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 124 tttgcactacaagat-caaaccatgcacaaag 154 |||||||||||| || |||||||||||||||| Sbjct: 703 tttgcactacaacatgcaaaccatgcacaaag 672
>emb|BX927395.18| Zebrafish DNA sequence from clone CH211-72A16 in linkage group 3, complete sequence Length = 152987 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 346 ccaaaattattatcaccttt 365 |||||||||||||||||||| Sbjct: 98789 ccaaaattattatcaccttt 98808
>emb|BX511171.13| Zebrafish DNA sequence from clone DKEY-264K15 in linkage group 4 Contains the ascl1a gene for achaete-scute complex-like 1a (Drosophila), the gene for a novel protein similar to vertebrate RecQ protein-like DNA helicase Q1-like (RECQL), the gene for a novel protein similar to tyrosine hydroxylase (th), the pah gene for phenylalanine hydroxylase, the 5' end of the gene for a novel protein similar to vertebrate uncharacterized hematopoietic stem/progenitor cells protein MDS028 (MDS028) and a CpG island, complete sequence Length = 166242 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 tgggtttaggcttttgggca 43 |||||||||||||||||||| Sbjct: 2726 tgggtttaggcttttgggca 2707
>gb|AC026347.17| Homo sapiens 3 BAC RP11-362A9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 195430 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 501 aaacagaatatcaccccttttaaa 524 |||||||||||||| ||||||||| Sbjct: 26903 aaacagaatatcactccttttaaa 26880
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 accagcaggcccagcgcgcc 203 |||||||||||||||||||| Sbjct: 1318248 accagcaggcccagcgcgcc 1318267
>emb|BX826032.1|CNS0A69G Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL80ZE04 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 855 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 421 tgaacaattggaatttcacggccatcaa 448 |||||||| ||||||||||| ||||||| Sbjct: 393 tgaacaatgggaatttcacgaccatcaa 366
>gb|AY086118.1| Arabidopsis thaliana clone 21563 mRNA, complete sequence Length = 820 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 421 tgaacaattggaatttcacggccatcaa 448 |||||||| ||||||||||| ||||||| Sbjct: 410 tgaacaatgggaatttcacgaccatcaa 383
>emb|BX548006.10| Zebrafish DNA sequence from clone DKEY-127P11, complete sequence Length = 158134 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 494 tgtgcaaaaacagaatatca 513 |||||||||||||||||||| Sbjct: 11194 tgtgcaaaaacagaatatca 11213
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 atgaccagcaggcccagcgc 200 |||||||||||||||||||| Sbjct: 282687 atgaccagcaggcccagcgc 282668
>emb|BX927116.18| Zebrafish DNA sequence from clone DKEY-261D11 in linkage group 22, complete sequence Length = 155808 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 494 tgtgcaaaaacagaatatca 513 |||||||||||||||||||| Sbjct: 77458 tgtgcaaaaacagaatatca 77477
>emb|BX914215.7| Zebrafish DNA sequence from clone DKEY-245F7 in linkage group 4, complete sequence Length = 141185 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 tgggtttaggcttttgggca 43 |||||||||||||||||||| Sbjct: 59939 tgggtttaggcttttgggca 59958
>emb|AL929274.7| Zebrafish DNA sequence from clone CH211-79M20 in linkage group 22, complete sequence Length = 169459 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 494 tgtgcaaaaacagaatatca 513 |||||||||||||||||||| Sbjct: 42047 tgtgcaaaaacagaatatca 42066
>gb|AC119259.15| Mus musculus chromosome 18, clone RP24-285N19, complete sequence Length = 169310 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 517 cttttaaatccaggctccat 536 |||||||||||||||||||| Sbjct: 159670 cttttaaatccaggctccat 159651
>dbj|AK116879.1| Ciona intestinalis cDNA, clone:cilv028p04, full insert sequence Length = 1775 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 gcaacaaaacttgttctgcc 113 |||||||||||||||||||| Sbjct: 1252 gcaacaaaacttgttctgcc 1271
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 accagcaggcccagcgcgcc 203 |||||||||||||||||||| Sbjct: 3218929 accagcaggcccagcgcgcc 3218948
>gb|AC118263.8| Mus musculus chromosome 1, clone RP24-502N12, complete sequence Length = 203126 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 442 ccatcaatattaaaaacaactatt 465 |||||||||||||||||| ||||| Sbjct: 76345 ccatcaatattaaaaacagctatt 76322 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,343,723 Number of Sequences: 3902068 Number of extensions: 5343723 Number of successful extensions: 102616 Number of sequences better than 10.0: 63 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 102245 Number of HSP's gapped (non-prelim): 362 length of query: 543 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 520 effective length of database: 17,143,297,704 effective search space: 8914514806080 effective search space used: 8914514806080 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)