ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd19e04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1OAZ3_MOUSE (Q9R109) Ornithine decarboxylase antizyme 3 (ODC-Az 3... 29 3.2
2GUC2E_RAT (P51840) Guanylyl cyclase GC-E precursor (EC 4.6.1.2) ... 28 4.2
3GUC2E_MOUSE (P52785) Guanylyl cyclase GC-E precursor (EC 4.6.1.2... 28 4.2
4THIC_MYCTU (P66911) Thiamine biosynthesis protein thiC 28 7.2
5THIC_MYCBO (P66912) Thiamine biosynthesis protein thiC 28 7.2
6LAMB2_MOUSE (Q61292) Laminin beta-2 chain precursor (S-laminin) ... 27 9.4

>OAZ3_MOUSE (Q9R109) Ornithine decarboxylase antizyme 3 (ODC-Az 3) (AZ3)|
           (OAZ-t)
          Length = 195

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 126 SFVQSSQKAITLRPGPTIICKMIPCSALAQKEAL 227
           S     Q+ +TLRP   + C  +PCS L   E+L
Sbjct: 8   SITYKEQEDLTLRPHCCLPCSCLPCSCLQCSESL 41



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>GUC2E_RAT (P51840) Guanylyl cyclase GC-E precursor (EC 4.6.1.2) (Guanylate|
           cyclase 2E)
          Length = 1108

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +3

Query: 87  MSNPCMGQVNLPSSFVQSSQKAITLRPGPTIICKMIPCSALAQKE--ALVHPFCPGDACS 260
           +  PC+   +L +  V S+   ++   GP       P   LAQ+   ALV   CPG   +
Sbjct: 104 LPEPCLTPGSLGA--VSSALTRVSGLVGPVNPAACRPAELLAQEAGVALVPWGCPGTRAA 161

Query: 261 GATMPAV 281
           G T PAV
Sbjct: 162 GTTAPAV 168



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>GUC2E_MOUSE (P52785) Guanylyl cyclase GC-E precursor (EC 4.6.1.2) (Guanylate|
           cyclase 2E)
          Length = 1108

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +3

Query: 87  MSNPCMGQVNLPSSFVQSSQKAITLRPGPTIICKMIPCSALAQKE--ALVHPFCPGDACS 260
           +  PC+   +L +  V S+   ++   GP       P   LAQ+   ALV   CPG   +
Sbjct: 104 LPEPCLTPGSLGA--VSSALSRVSGLVGPVNPAGCRPAELLAQEAGVALVPWGCPGTRAA 161

Query: 261 GATMPAV 281
           G T PAV
Sbjct: 162 GTTAPAV 168



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>THIC_MYCTU (P66911) Thiamine biosynthesis protein thiC|
          Length = 547

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +2

Query: 116 SAQLVRAELTKGYNIKTGTHYHMQNDPL 199
           SA+LVR E+ +G  +    H+H +++P+
Sbjct: 106 SAELVRDEVARGRAVIPANHHHPESEPM 133



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>THIC_MYCBO (P66912) Thiamine biosynthesis protein thiC|
          Length = 547

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +2

Query: 116 SAQLVRAELTKGYNIKTGTHYHMQNDPL 199
           SA+LVR E+ +G  +    H+H +++P+
Sbjct: 106 SAELVRDEVARGRAVIPANHHHPESEPM 133



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>LAMB2_MOUSE (Q61292) Laminin beta-2 chain precursor (S-laminin) (S-LAM)|
          Length = 1799

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +3

Query: 183  CKMIPCSALAQKEALVHPFCPGDACSGATMPA 278
            C   PC     ++    P C G  CSGA  PA
Sbjct: 1419 CATSPCGGAGCRDEDGQPRCGGLGCSGAAAPA 1450


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,304,763
Number of Sequences: 219361
Number of extensions: 1026720
Number of successful extensions: 2195
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2195
length of database: 80,573,946
effective HSP length: 96
effective length of database: 59,515,290
effective search space used: 1428366960
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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