Clone Name | rbasd19e02 |
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Clone Library Name | barley_pub |
>emb|X91659.1|HVEXTGENE H.vulgare mRNA for endoxyloglucan transferase Length = 1175 Score = 484 bits (244), Expect = e-134 Identities = 263/270 (97%), Gaps = 1/270 (0%) Strand = Plus / Minus Query: 1 catacagacacgtagggatacaaattcctcgtactagtacatctcatcgaccgcaccgcg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1096 catacagacacgtagggatacaaattcctcgtactagtacatctcatcgaccgcaccgcg 1037 Query: 61 accggtggtacaacancaactactgnagtagcggtcctttacatcagtagtagtaagtna 120 ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| | Sbjct: 1036 accggtggtacaacaacaactactgtagtagcggtcctttacatcagtagtagtaagtaa 977 Query: 121 agtntatcacgctcagacgtcgcggtcgcagtttgcactcgggcgacatggcggcgtatc 180 ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 976 agtatatcacgctcagacgtcgcggtcgc-gtttgcactcgggcgacatggcggcgtatc 918 Query: 181 gttcgcggtctgtgcagtagttgtagatggtgtgctccttcctgacccaggcgaggcggn 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 917 gttcgcggtctgtgcagtagttgtagatggtgtgctccttcctgacccaggcgaggcggc 858 Query: 241 ggtactgcgcggngtccaggtcctggaact 270 |||||||||||| ||||||||||||||||| Sbjct: 857 ggtactgcgcggcgtccaggtcctggaact 828
>dbj|D16457.1|WHTEXT4 Wheat mRNA for endo-xyloglucan transferase, complete cds Length = 1088 Score = 192 bits (97), Expect = 4e-46 Identities = 129/139 (92%), Gaps = 1/139 (0%) Strand = Plus / Minus Query: 132 ctcagacgtcgcggtcgcagtttgcactcgggcgacatggcggcgtatcgttcgcggtct 191 |||||||||||||||||| | |||||||| |||| |||||||||||| || ||| |||| Sbjct: 926 ctcagacgtcgcggtcgc-gcttgcactctggcgccatggcggcgtagcggtcgtggtcg 868 Query: 192 gtgcagtagttgtagatggtgtgctccttcctgacccaggcgaggcggnggtactgcgcg 251 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 867 gtgcagtagttgtagatggtgtgctccttcctgacccaggcgaggcggcggtactgcgcg 808 Query: 252 gngtccaggtcctggaact 270 | ||||||||||||||||| Sbjct: 807 gcgtccaggtcctggaact 789 Score = 79.8 bits (40), Expect = 4e-12 Identities = 63/71 (88%) Strand = Plus / Minus Query: 12 gtagggatacaaattcctcgtactagtacatctcatcgaccgcaccgcgaccggtggtac 71 ||||||||||||||||||||||||| || ||||| |||||||||||||||| | || || Sbjct: 1039 gtagggatacaaattcctcgtactactaggtctcagcgaccgcaccgcgaccagcggcac 980 Query: 72 aacancaacta 82 |||| |||||| Sbjct: 979 aacaacaacta 969
>gb|AC134925.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041J17, complete sequence Length = 148829 Score = 113 bits (57), Expect = 3e-22 Identities = 102/116 (87%), Gaps = 1/116 (0%) Strand = Plus / Minus Query: 132 ctcagacgtcgcggtcgcagtttgcactcgggcgacatggcggcgtatcgttcgcggtct 191 ||||| |||||||||||| || |||||||||||||||||||| ||| ||||||||||| Sbjct: 115781 ctcaggcgtcgcggtcgcggtg-gcactcgggcgacatggcggggtagcgttcgcggtcg 115723 Query: 192 gtgcagtagttgtagatggtgtgctccttcctgacccaggcgaggcggnggtactg 247 |||||||||||||||||||||| ||| | |||||||||||||||| ||||||| Sbjct: 115722 tcgcagtagttgtagatggtgtgcgtcttgcggacccaggcgaggcggcggtactg 115667
>gb|AC136481.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0007D07, complete sequence Length = 133930 Score = 113 bits (57), Expect = 3e-22 Identities = 102/116 (87%), Gaps = 1/116 (0%) Strand = Plus / Minus Query: 132 ctcagacgtcgcggtcgcagtttgcactcgggcgacatggcggcgtatcgttcgcggtct 191 ||||| |||||||||||| || |||||||||||||||||||| ||| ||||||||||| Sbjct: 15400 ctcaggcgtcgcggtcgcggtg-gcactcgggcgacatggcggggtagcgttcgcggtcg 15342 Query: 192 gtgcagtagttgtagatggtgtgctccttcctgacccaggcgaggcggnggtactg 247 |||||||||||||||||||||| ||| | |||||||||||||||| ||||||| Sbjct: 15341 tcgcagtagttgtagatggtgtgcgtcttgcggacccaggcgaggcggcggtactg 15286
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 113 bits (57), Expect = 3e-22 Identities = 102/116 (87%), Gaps = 1/116 (0%) Strand = Plus / Minus Query: 132 ctcagacgtcgcggtcgcagtttgcactcgggcgacatggcggcgtatcgttcgcggtct 191 ||||| |||||||||||| || |||||||||||||||||||| ||| ||||||||||| Sbjct: 19012583 ctcaggcgtcgcggtcgcggtg-gcactcgggcgacatggcggggtagcgttcgcggtcg 19012525 Query: 192 gtgcagtagttgtagatggtgtgctccttcctgacccaggcgaggcggnggtactg 247 |||||||||||||||||||||| ||| | |||||||||||||||| ||||||| Sbjct: 19012524 tcgcagtagttgtagatggtgtgcgtcttgcggacccaggcgaggcggcggtactg 19012469
>dbj|AK071574.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105D14, full insert sequence Length = 977 Score = 113 bits (57), Expect = 3e-22 Identities = 102/116 (87%), Gaps = 1/116 (0%) Strand = Plus / Minus Query: 132 ctcagacgtcgcggtcgcagtttgcactcgggcgacatggcggcgtatcgttcgcggtct 191 ||||| |||||||||||| || |||||||||||||||||||| ||| ||||||||||| Sbjct: 916 ctcaggcgtcgcggtcgcggtg-gcactcgggcgacatggcggggtagcgttcgcggtcg 858 Query: 192 gtgcagtagttgtagatggtgtgctccttcctgacccaggcgaggcggnggtactg 247 |||||||||||||||||||||| ||| | |||||||||||||||| ||||||| Sbjct: 857 tcgcagtagttgtagatggtgtgcgtcttgcggacccaggcgaggcggcggtactg 802
>dbj|AK061093.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-A02, full insert sequence Length = 1053 Score = 113 bits (57), Expect = 3e-22 Identities = 102/116 (87%), Gaps = 1/116 (0%) Strand = Plus / Minus Query: 132 ctcagacgtcgcggtcgcagtttgcactcgggcgacatggcggcgtatcgttcgcggtct 191 ||||| |||||||||||| || |||||||||||||||||||| ||| ||||||||||| Sbjct: 913 ctcaggcgtcgcggtcgcggtg-gcactcgggcgacatggcggggtagcgttcgcggtcg 855 Query: 192 gtgcagtagttgtagatggtgtgctccttcctgacccaggcgaggcggnggtactg 247 |||||||||||||||||||||| ||| | |||||||||||||||| ||||||| Sbjct: 854 tcgcagtagttgtagatggtgtgcgtcttgcggacccaggcgaggcggcggtactg 799
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 113 bits (57), Expect = 3e-22 Identities = 102/116 (87%), Gaps = 1/116 (0%) Strand = Plus / Minus Query: 132 ctcagacgtcgcggtcgcagtttgcactcgggcgacatggcggcgtatcgttcgcggtct 191 ||||| |||||||||||| || |||||||||||||||||||| ||| ||||||||||| Sbjct: 19171232 ctcaggcgtcgcggtcgcggtg-gcactcgggcgacatggcggggtagcgttcgcggtcg 19171174 Query: 192 gtgcagtagttgtagatggtgtgctccttcctgacccaggcgaggcggnggtactg 247 |||||||||||||||||||||| ||| | |||||||||||||||| ||||||| Sbjct: 19171173 tcgcagtagttgtagatggtgtgcgtcttgcggacccaggcgaggcggcggtactg 19171118
>gb|AY104207.1| Zea mays PCO111099 mRNA sequence Length = 1202 Score = 54.0 bits (27), Expect = 2e-04 Identities = 111/135 (82%), Gaps = 6/135 (4%) Strand = Plus / Minus Query: 133 tcagacgtcgcggtcgcagtttgcactcgggcgacatggcggcg---tatcgttcgcggt 189 ||||||||||||||||| | ||||||||||| || ||||||| || || ||||| | Sbjct: 941 tcagacgtcgcggtcgcgggc-gcactcgggcggcacggcggcgccgtagcggtcgcgat 883 Query: 190 ctgtgcagtagttgtagatggtgt-gctccttcctgacccaggcgaggcggnggtactgc 248 | |||||||||||||||||||||| || | ||||||| ||| |||||| |||||||| Sbjct: 882 cggtgcagtagttgtagatggtgtagcggc-gcctgacctcggccaggcggcggtactgc 824 Query: 249 gcggngtccaggtcc 263 |||| ||| |||||| Sbjct: 823 gcggcgtcgaggtcc 809
>gb|AY144593.1| Malus x domestica xyloglucan endotransglycosylase (XET01) mRNA, complete cds Length = 1268 Score = 46.1 bits (23), Expect = 0.057 Identities = 26/27 (96%) Strand = Plus / Minus Query: 186 cggtctgtgcagtagttgtagatggtg 212 ||||| ||||||||||||||||||||| Sbjct: 890 cggtcagtgcagtagttgtagatggtg 864
>ref|NM_121390.3| Arabidopsis thaliana EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4); hydrolase, acting on glycosyl bonds / hydrolase, hydrolyzing O-glycosyl compounds AT5G13870 (EXGT-A4) mRNA, complete cds Length = 1386 Score = 44.1 bits (22), Expect = 0.22 Identities = 28/30 (93%) Strand = Plus / Minus Query: 184 cgcggtctgtgcagtagttgtagatggtgt 213 ||||||| ||||| |||||||||||||||| Sbjct: 1229 cgcggtcagtgcaatagttgtagatggtgt 1200
>emb|BX830569.1|CNS0A1EU Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB90ZE02 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1347 Score = 44.1 bits (22), Expect = 0.22 Identities = 28/30 (93%) Strand = Plus / Minus Query: 184 cgcggtctgtgcagtagttgtagatggtgt 213 ||||||| ||||| |||||||||||||||| Sbjct: 1229 cgcggtcagtgcaatagttgtagatggtgt 1200
>emb|BX831074.1|CNS0A0QQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS55ZF02 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1362 Score = 44.1 bits (22), Expect = 0.22 Identities = 28/30 (93%) Strand = Plus / Minus Query: 184 cgcggtctgtgcagtagttgtagatggtgt 213 ||||||| ||||| |||||||||||||||| Sbjct: 1220 cgcggtcagtgcaatagttgtagatggtgt 1191
>dbj|AK176228.1| Arabidopsis thaliana mRNA for endoxyloglucan transferase, complete cds, clone: RAFL23-11-K19 Length = 1028 Score = 44.1 bits (22), Expect = 0.22 Identities = 28/30 (93%) Strand = Plus / Minus Query: 184 cgcggtctgtgcagtagttgtagatggtgt 213 ||||||| ||||| |||||||||||||||| Sbjct: 852 cgcggtcagtgcaatagttgtagatggtgt 823
>dbj|AB005230.2| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAC12 Length = 74613 Score = 44.1 bits (22), Expect = 0.22 Identities = 28/30 (93%) Strand = Plus / Plus Query: 184 cgcggtctgtgcagtagttgtagatggtgt 213 ||||||| ||||| |||||||||||||||| Sbjct: 25611 cgcggtcagtgcaatagttgtagatggtgt 25640
>gb|AF163822.1|AF163822 Arabidopsis thaliana endoxyloglucan transferase (EXGT-A4) gene, complete cds Length = 2645 Score = 44.1 bits (22), Expect = 0.22 Identities = 28/30 (93%) Strand = Plus / Minus Query: 184 cgcggtctgtgcagtagttgtagatggtgt 213 ||||||| ||||| |||||||||||||||| Sbjct: 2377 cgcggtcagtgcaatagttgtagatggtgt 2348
>dbj|AB086395.1| Vigna angularis VaXTH1 gene for xyloglucan endotransglucosylase/hydrolase, complete cds Length = 1913 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Minus Query: 192 gtgcagtagttgtagatggtgt 213 |||||||||||||||||||||| Sbjct: 1607 gtgcagtagttgtagatggtgt 1586
>dbj|D16458.1|VIREXT5 V.angularis mRNA for endo-xyloglucan transferase, complete cds Length = 1319 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Minus Query: 192 gtgcagtagttgtagatggtgt 213 |||||||||||||||||||||| Sbjct: 996 gtgcagtagttgtagatggtgt 975
>dbj|D16455.1|SOYEXT2 Soybean mRNA for endo-xyloglucan transferase, partial cds Length = 975 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Minus Query: 192 gtgcagtagttgtagatggtgt 213 |||||||||||||||||||||| Sbjct: 829 gtgcagtagttgtagatggtgt 808
>dbj|AB026486.1| Arabidopsis thaliana EXGT-A4 mRNA for endoxyloglucan transferase, complete cds Length = 1050 Score = 44.1 bits (22), Expect = 0.22 Identities = 28/30 (93%) Strand = Plus / Minus Query: 184 cgcggtctgtgcagtagttgtagatggtgt 213 ||||||| ||||| |||||||||||||||| Sbjct: 872 cgcggtcagtgcaatagttgtagatggtgt 843
>gb|AY841854.1| Vigna radiata xyloglucan endotransglucosylase/hydrolase precursor (XTH1) mRNA, complete cds Length = 1112 Score = 42.1 bits (21), Expect = 0.89 Identities = 21/21 (100%) Strand = Plus / Minus Query: 192 gtgcagtagttgtagatggtg 212 ||||||||||||||||||||| Sbjct: 809 gtgcagtagttgtagatggtg 789
>dbj|AB196977.1| Sagittaria pygmaea SpXTH4 mRNA for xyloglucan endotransglucosylase/hydrolase, complete cds Length = 1181 Score = 42.1 bits (21), Expect = 0.89 Identities = 21/21 (100%) Strand = Plus / Minus Query: 188 gtctgtgcagtagttgtagat 208 ||||||||||||||||||||| Sbjct: 1065 gtctgtgcagtagttgtagat 1045
>dbj|AB086396.1| Vigna angularis VaXTH2 gene for xyloglucan endotransglucosylase/hydrolase, complete cds Length = 1712 Score = 42.1 bits (21), Expect = 0.89 Identities = 21/21 (100%) Strand = Plus / Minus Query: 192 gtgcagtagttgtagatggtg 212 ||||||||||||||||||||| Sbjct: 1446 gtgcagtagttgtagatggtg 1426
>gb|DQ279095.1| Rosa x borboniana xyloglucan endotransglucosylase hydrolase mRNA, complete cds Length = 1130 Score = 42.1 bits (21), Expect = 0.89 Identities = 21/21 (100%) Strand = Plus / Minus Query: 192 gtgcagtagttgtagatggtg 212 ||||||||||||||||||||| Sbjct: 868 gtgcagtagttgtagatggtg 848
>emb|AJ811689.1| Pyrus communis xet gene for xyloglucan endotransglycosilase, exon 1 Length = 1007 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 tgcagtagttgtagatggtg 212 |||||||||||||||||||| Sbjct: 925 tgcagtagttgtagatggtg 906
>dbj|AK140479.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:B930008M23 product:Similar to dynein heavy chain at 16F homolog [Homo sapiens], full insert sequence Length = 4389 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 tgtgctccttcctgacccag 230 |||||||||||||||||||| Sbjct: 90 tgtgctccttcctgacccag 71
>gb|DP000051.1| Carollia perspicillata target 126 genomic scaffold Length = 501879 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 tacagacacgtagggataca 22 |||||||||||||||||||| Sbjct: 498467 tacagacacgtagggataca 498448
>dbj|AB095368.1| Pyrus communis PC-XET1 mRNA for xyloglucan endotransglycosylase, partial cds Length = 1292 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 tgcagtagttgtagatggtg 212 |||||||||||||||||||| Sbjct: 949 tgcagtagttgtagatggtg 930
>gb|L46792.1|ACTXET Actinidia deliciosa clone AdXET-5 xyloglucan endotransglycosylase precursor (XET) mRNA, complete cds Length = 1178 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 gtgcagtagttgtagatggt 211 |||||||||||||||||||| Sbjct: 855 gtgcagtagttgtagatggt 836
>gb|AC122201.4| Mus musculus BAC clone RP23-64I9 from 6, complete sequence Length = 239994 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 tgtgctccttcctgacccag 230 |||||||||||||||||||| Sbjct: 195584 tgtgctccttcctgacccag 195565 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,244,661 Number of Sequences: 3902068 Number of extensions: 1244661 Number of successful extensions: 18859 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 18809 Number of HSP's gapped (non-prelim): 40 length of query: 270 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 248 effective length of database: 17,147,199,772 effective search space: 4252505543456 effective search space used: 4252505543456 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)