ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd19e02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|X91659.1|HVEXTGENE H.vulgare mRNA for endoxyloglucan transfe... 484 e-134
2dbj|D16457.1|WHTEXT4 Wheat mRNA for endo-xyloglucan transferase,... 192 4e-46
3gb|AC134925.4| Oryza sativa (japonica cultivar-group) chromosome... 113 3e-22
4gb|AC136481.6| Oryza sativa (japonica cultivar-group) chromosome... 113 3e-22
5dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 113 3e-22
6dbj|AK071574.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 3e-22
7dbj|AK061093.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 3e-22
8gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 113 3e-22
9gb|AY104207.1| Zea mays PCO111099 mRNA sequence 54 2e-04
10gb|AY144593.1| Malus x domestica xyloglucan endotransglycosylase... 46 0.057
11ref|NM_121390.3| Arabidopsis thaliana EXGT-A4 (ENDOXYLOGLUCAN TR... 44 0.22
12emb|BX830569.1|CNS0A1EU Arabidopsis thaliana Full-length cDNA Co... 44 0.22
13emb|BX831074.1|CNS0A0QQ Arabidopsis thaliana Full-length cDNA Co... 44 0.22
14dbj|AK176228.1| Arabidopsis thaliana mRNA for endoxyloglucan tra... 44 0.22
15dbj|AB005230.2| Arabidopsis thaliana genomic DNA, chromosome 5, ... 44 0.22
16gb|AF163822.1|AF163822 Arabidopsis thaliana endoxyloglucan trans... 44 0.22
17dbj|AB086395.1| Vigna angularis VaXTH1 gene for xyloglucan endot... 44 0.22
18dbj|D16458.1|VIREXT5 V.angularis mRNA for endo-xyloglucan transf... 44 0.22
19dbj|D16455.1|SOYEXT2 Soybean mRNA for endo-xyloglucan transferas... 44 0.22
20dbj|AB026486.1| Arabidopsis thaliana EXGT-A4 mRNA for endoxylogl... 44 0.22
21gb|AY841854.1| Vigna radiata xyloglucan endotransglucosylase/hyd... 42 0.89
22dbj|AB196977.1| Sagittaria pygmaea SpXTH4 mRNA for xyloglucan en... 42 0.89
23dbj|AB086396.1| Vigna angularis VaXTH2 gene for xyloglucan endot... 42 0.89
24gb|DQ279095.1| Rosa x borboniana xyloglucan endotransglucosylase... 42 0.89
25emb|AJ811689.1| Pyrus communis xet gene for xyloglucan endotrans... 40 3.5
26dbj|AK140479.1| Mus musculus 10 days neonate cerebellum cDNA, RI... 40 3.5
27gb|DP000051.1| Carollia perspicillata target 126 genomic scaffold 40 3.5
28dbj|AB095368.1| Pyrus communis PC-XET1 mRNA for xyloglucan endot... 40 3.5
29gb|L46792.1|ACTXET Actinidia deliciosa clone AdXET-5 xyloglucan ... 40 3.5
30gb|AC122201.4| Mus musculus BAC clone RP23-64I9 from 6, complete... 40 3.5

>emb|X91659.1|HVEXTGENE H.vulgare mRNA for endoxyloglucan transferase
          Length = 1175

 Score =  484 bits (244), Expect = e-134
 Identities = 263/270 (97%), Gaps = 1/270 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    catacagacacgtagggatacaaattcctcgtactagtacatctcatcgaccgcaccgcg 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1096 catacagacacgtagggatacaaattcctcgtactagtacatctcatcgaccgcaccgcg 1037

                                                                        
Query: 61   accggtggtacaacancaactactgnagtagcggtcctttacatcagtagtagtaagtna 120
            ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 1036 accggtggtacaacaacaactactgtagtagcggtcctttacatcagtagtagtaagtaa 977

                                                                        
Query: 121  agtntatcacgctcagacgtcgcggtcgcagtttgcactcgggcgacatggcggcgtatc 180
            ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 976  agtatatcacgctcagacgtcgcggtcgc-gtttgcactcgggcgacatggcggcgtatc 918

                                                                        
Query: 181  gttcgcggtctgtgcagtagttgtagatggtgtgctccttcctgacccaggcgaggcggn 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 917  gttcgcggtctgtgcagtagttgtagatggtgtgctccttcctgacccaggcgaggcggc 858

                                          
Query: 241  ggtactgcgcggngtccaggtcctggaact 270
            |||||||||||| |||||||||||||||||
Sbjct: 857  ggtactgcgcggcgtccaggtcctggaact 828



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>dbj|D16457.1|WHTEXT4 Wheat mRNA for endo-xyloglucan transferase, complete cds
          Length = 1088

 Score =  192 bits (97), Expect = 4e-46
 Identities = 129/139 (92%), Gaps = 1/139 (0%)
 Strand = Plus / Minus

                                                                       
Query: 132 ctcagacgtcgcggtcgcagtttgcactcgggcgacatggcggcgtatcgttcgcggtct 191
           |||||||||||||||||| | |||||||| |||| |||||||||||| || ||| |||| 
Sbjct: 926 ctcagacgtcgcggtcgc-gcttgcactctggcgccatggcggcgtagcggtcgtggtcg 868

                                                                       
Query: 192 gtgcagtagttgtagatggtgtgctccttcctgacccaggcgaggcggnggtactgcgcg 251
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 867 gtgcagtagttgtagatggtgtgctccttcctgacccaggcgaggcggcggtactgcgcg 808

                              
Query: 252 gngtccaggtcctggaact 270
           | |||||||||||||||||
Sbjct: 807 gcgtccaggtcctggaact 789



 Score = 79.8 bits (40), Expect = 4e-12
 Identities = 63/71 (88%)
 Strand = Plus / Minus

                                                                        
Query: 12   gtagggatacaaattcctcgtactagtacatctcatcgaccgcaccgcgaccggtggtac 71
            ||||||||||||||||||||||||| ||  ||||| |||||||||||||||| | || ||
Sbjct: 1039 gtagggatacaaattcctcgtactactaggtctcagcgaccgcaccgcgaccagcggcac 980

                       
Query: 72   aacancaacta 82
            |||| ||||||
Sbjct: 979  aacaacaacta 969



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>gb|AC134925.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041J17,
              complete sequence
          Length = 148829

 Score =  113 bits (57), Expect = 3e-22
 Identities = 102/116 (87%), Gaps = 1/116 (0%)
 Strand = Plus / Minus

                                                                          
Query: 132    ctcagacgtcgcggtcgcagtttgcactcgggcgacatggcggcgtatcgttcgcggtct 191
              ||||| |||||||||||| ||  |||||||||||||||||||| ||| ||||||||||| 
Sbjct: 115781 ctcaggcgtcgcggtcgcggtg-gcactcgggcgacatggcggggtagcgttcgcggtcg 115723

                                                                      
Query: 192    gtgcagtagttgtagatggtgtgctccttcctgacccaggcgaggcggnggtactg 247
                ||||||||||||||||||||||  ||| | |||||||||||||||| |||||||
Sbjct: 115722 tcgcagtagttgtagatggtgtgcgtcttgcggacccaggcgaggcggcggtactg 115667



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>gb|AC136481.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0007D07, complete sequence
          Length = 133930

 Score =  113 bits (57), Expect = 3e-22
 Identities = 102/116 (87%), Gaps = 1/116 (0%)
 Strand = Plus / Minus

                                                                         
Query: 132   ctcagacgtcgcggtcgcagtttgcactcgggcgacatggcggcgtatcgttcgcggtct 191
             ||||| |||||||||||| ||  |||||||||||||||||||| ||| ||||||||||| 
Sbjct: 15400 ctcaggcgtcgcggtcgcggtg-gcactcgggcgacatggcggggtagcgttcgcggtcg 15342

                                                                     
Query: 192   gtgcagtagttgtagatggtgtgctccttcctgacccaggcgaggcggnggtactg 247
               ||||||||||||||||||||||  ||| | |||||||||||||||| |||||||
Sbjct: 15341 tcgcagtagttgtagatggtgtgcgtcttgcggacccaggcgaggcggcggtactg 15286



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  113 bits (57), Expect = 3e-22
 Identities = 102/116 (87%), Gaps = 1/116 (0%)
 Strand = Plus / Minus

                                                                            
Query: 132      ctcagacgtcgcggtcgcagtttgcactcgggcgacatggcggcgtatcgttcgcggtct 191
                ||||| |||||||||||| ||  |||||||||||||||||||| ||| ||||||||||| 
Sbjct: 19012583 ctcaggcgtcgcggtcgcggtg-gcactcgggcgacatggcggggtagcgttcgcggtcg 19012525

                                                                        
Query: 192      gtgcagtagttgtagatggtgtgctccttcctgacccaggcgaggcggnggtactg 247
                  ||||||||||||||||||||||  ||| | |||||||||||||||| |||||||
Sbjct: 19012524 tcgcagtagttgtagatggtgtgcgtcttgcggacccaggcgaggcggcggtactg 19012469



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>dbj|AK071574.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105D14, full
           insert sequence
          Length = 977

 Score =  113 bits (57), Expect = 3e-22
 Identities = 102/116 (87%), Gaps = 1/116 (0%)
 Strand = Plus / Minus

                                                                       
Query: 132 ctcagacgtcgcggtcgcagtttgcactcgggcgacatggcggcgtatcgttcgcggtct 191
           ||||| |||||||||||| ||  |||||||||||||||||||| ||| ||||||||||| 
Sbjct: 916 ctcaggcgtcgcggtcgcggtg-gcactcgggcgacatggcggggtagcgttcgcggtcg 858

                                                                   
Query: 192 gtgcagtagttgtagatggtgtgctccttcctgacccaggcgaggcggnggtactg 247
             ||||||||||||||||||||||  ||| | |||||||||||||||| |||||||
Sbjct: 857 tcgcagtagttgtagatggtgtgcgtcttgcggacccaggcgaggcggcggtactg 802



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>dbj|AK061093.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-A02, full
           insert sequence
          Length = 1053

 Score =  113 bits (57), Expect = 3e-22
 Identities = 102/116 (87%), Gaps = 1/116 (0%)
 Strand = Plus / Minus

                                                                       
Query: 132 ctcagacgtcgcggtcgcagtttgcactcgggcgacatggcggcgtatcgttcgcggtct 191
           ||||| |||||||||||| ||  |||||||||||||||||||| ||| ||||||||||| 
Sbjct: 913 ctcaggcgtcgcggtcgcggtg-gcactcgggcgacatggcggggtagcgttcgcggtcg 855

                                                                   
Query: 192 gtgcagtagttgtagatggtgtgctccttcctgacccaggcgaggcggnggtactg 247
             ||||||||||||||||||||||  ||| | |||||||||||||||| |||||||
Sbjct: 854 tcgcagtagttgtagatggtgtgcgtcttgcggacccaggcgaggcggcggtactg 799



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  113 bits (57), Expect = 3e-22
 Identities = 102/116 (87%), Gaps = 1/116 (0%)
 Strand = Plus / Minus

                                                                            
Query: 132      ctcagacgtcgcggtcgcagtttgcactcgggcgacatggcggcgtatcgttcgcggtct 191
                ||||| |||||||||||| ||  |||||||||||||||||||| ||| ||||||||||| 
Sbjct: 19171232 ctcaggcgtcgcggtcgcggtg-gcactcgggcgacatggcggggtagcgttcgcggtcg 19171174

                                                                        
Query: 192      gtgcagtagttgtagatggtgtgctccttcctgacccaggcgaggcggnggtactg 247
                  ||||||||||||||||||||||  ||| | |||||||||||||||| |||||||
Sbjct: 19171173 tcgcagtagttgtagatggtgtgcgtcttgcggacccaggcgaggcggcggtactg 19171118



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>gb|AY104207.1| Zea mays PCO111099 mRNA sequence
          Length = 1202

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 111/135 (82%), Gaps = 6/135 (4%)
 Strand = Plus / Minus

                                                                       
Query: 133 tcagacgtcgcggtcgcagtttgcactcgggcgacatggcggcg---tatcgttcgcggt 189
           ||||||||||||||||| |   ||||||||||| || |||||||   || || ||||| |
Sbjct: 941 tcagacgtcgcggtcgcgggc-gcactcgggcggcacggcggcgccgtagcggtcgcgat 883

                                                                       
Query: 190 ctgtgcagtagttgtagatggtgt-gctccttcctgacccaggcgaggcggnggtactgc 248
           | |||||||||||||||||||||| ||  |  |||||||  ||| |||||| ||||||||
Sbjct: 882 cggtgcagtagttgtagatggtgtagcggc-gcctgacctcggccaggcggcggtactgc 824

                          
Query: 249 gcggngtccaggtcc 263
           |||| ||| ||||||
Sbjct: 823 gcggcgtcgaggtcc 809



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>gb|AY144593.1| Malus x domestica xyloglucan endotransglycosylase (XET01) mRNA,
           complete cds
          Length = 1268

 Score = 46.1 bits (23), Expect = 0.057
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 186 cggtctgtgcagtagttgtagatggtg 212
           ||||| |||||||||||||||||||||
Sbjct: 890 cggtcagtgcagtagttgtagatggtg 864



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>ref|NM_121390.3| Arabidopsis thaliana EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4);
            hydrolase, acting on glycosyl bonds / hydrolase,
            hydrolyzing O-glycosyl compounds AT5G13870 (EXGT-A4)
            mRNA, complete cds
          Length = 1386

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 184  cgcggtctgtgcagtagttgtagatggtgt 213
            ||||||| ||||| ||||||||||||||||
Sbjct: 1229 cgcggtcagtgcaatagttgtagatggtgt 1200



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>emb|BX830569.1|CNS0A1EU Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB90ZE02 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1347

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 184  cgcggtctgtgcagtagttgtagatggtgt 213
            ||||||| ||||| ||||||||||||||||
Sbjct: 1229 cgcggtcagtgcaatagttgtagatggtgt 1200



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>emb|BX831074.1|CNS0A0QQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS55ZF02 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1362

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 184  cgcggtctgtgcagtagttgtagatggtgt 213
            ||||||| ||||| ||||||||||||||||
Sbjct: 1220 cgcggtcagtgcaatagttgtagatggtgt 1191



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>dbj|AK176228.1| Arabidopsis thaliana mRNA for endoxyloglucan transferase, complete
           cds, clone: RAFL23-11-K19
          Length = 1028

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 184 cgcggtctgtgcagtagttgtagatggtgt 213
           ||||||| ||||| ||||||||||||||||
Sbjct: 852 cgcggtcagtgcaatagttgtagatggtgt 823



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>dbj|AB005230.2| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAC12
          Length = 74613

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 184   cgcggtctgtgcagtagttgtagatggtgt 213
             ||||||| ||||| ||||||||||||||||
Sbjct: 25611 cgcggtcagtgcaatagttgtagatggtgt 25640



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>gb|AF163822.1|AF163822 Arabidopsis thaliana endoxyloglucan transferase (EXGT-A4) gene,
            complete cds
          Length = 2645

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 184  cgcggtctgtgcagtagttgtagatggtgt 213
            ||||||| ||||| ||||||||||||||||
Sbjct: 2377 cgcggtcagtgcaatagttgtagatggtgt 2348



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>dbj|AB086395.1| Vigna angularis VaXTH1 gene for xyloglucan
            endotransglucosylase/hydrolase, complete cds
          Length = 1913

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 192  gtgcagtagttgtagatggtgt 213
            ||||||||||||||||||||||
Sbjct: 1607 gtgcagtagttgtagatggtgt 1586



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>dbj|D16458.1|VIREXT5 V.angularis mRNA for endo-xyloglucan transferase, complete cds
          Length = 1319

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 192 gtgcagtagttgtagatggtgt 213
           ||||||||||||||||||||||
Sbjct: 996 gtgcagtagttgtagatggtgt 975



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>dbj|D16455.1|SOYEXT2 Soybean mRNA for endo-xyloglucan transferase, partial cds
          Length = 975

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 192 gtgcagtagttgtagatggtgt 213
           ||||||||||||||||||||||
Sbjct: 829 gtgcagtagttgtagatggtgt 808



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>dbj|AB026486.1| Arabidopsis thaliana EXGT-A4 mRNA for endoxyloglucan transferase,
           complete cds
          Length = 1050

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 184 cgcggtctgtgcagtagttgtagatggtgt 213
           ||||||| ||||| ||||||||||||||||
Sbjct: 872 cgcggtcagtgcaatagttgtagatggtgt 843



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>gb|AY841854.1| Vigna radiata xyloglucan endotransglucosylase/hydrolase precursor
           (XTH1) mRNA, complete cds
          Length = 1112

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 192 gtgcagtagttgtagatggtg 212
           |||||||||||||||||||||
Sbjct: 809 gtgcagtagttgtagatggtg 789



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>dbj|AB196977.1| Sagittaria pygmaea SpXTH4 mRNA for xyloglucan
            endotransglucosylase/hydrolase, complete cds
          Length = 1181

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 188  gtctgtgcagtagttgtagat 208
            |||||||||||||||||||||
Sbjct: 1065 gtctgtgcagtagttgtagat 1045



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>dbj|AB086396.1| Vigna angularis VaXTH2 gene for xyloglucan
            endotransglucosylase/hydrolase, complete cds
          Length = 1712

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 192  gtgcagtagttgtagatggtg 212
            |||||||||||||||||||||
Sbjct: 1446 gtgcagtagttgtagatggtg 1426



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>gb|DQ279095.1| Rosa x borboniana xyloglucan endotransglucosylase hydrolase mRNA,
           complete cds
          Length = 1130

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 192 gtgcagtagttgtagatggtg 212
           |||||||||||||||||||||
Sbjct: 868 gtgcagtagttgtagatggtg 848



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>emb|AJ811689.1| Pyrus communis xet gene for xyloglucan endotransglycosilase, exon 1
          Length = 1007

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 193 tgcagtagttgtagatggtg 212
           ||||||||||||||||||||
Sbjct: 925 tgcagtagttgtagatggtg 906



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>dbj|AK140479.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:B930008M23 product:Similar to
           dynein heavy chain at 16F homolog [Homo sapiens], full
           insert sequence
          Length = 4389

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 211 tgtgctccttcctgacccag 230
           ||||||||||||||||||||
Sbjct: 90  tgtgctccttcctgacccag 71



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>gb|DP000051.1| Carollia perspicillata target 126 genomic scaffold
          Length = 501879

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 3      tacagacacgtagggataca 22
              ||||||||||||||||||||
Sbjct: 498467 tacagacacgtagggataca 498448



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>dbj|AB095368.1| Pyrus communis PC-XET1 mRNA for xyloglucan endotransglycosylase,
           partial cds
          Length = 1292

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 193 tgcagtagttgtagatggtg 212
           ||||||||||||||||||||
Sbjct: 949 tgcagtagttgtagatggtg 930



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>gb|L46792.1|ACTXET Actinidia deliciosa clone AdXET-5 xyloglucan endotransglycosylase
           precursor (XET) mRNA, complete cds
          Length = 1178

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 192 gtgcagtagttgtagatggt 211
           ||||||||||||||||||||
Sbjct: 855 gtgcagtagttgtagatggt 836



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>gb|AC122201.4| Mus musculus BAC clone RP23-64I9 from 6, complete sequence
          Length = 239994

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 211    tgtgctccttcctgacccag 230
              ||||||||||||||||||||
Sbjct: 195584 tgtgctccttcctgacccag 195565


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,244,661
Number of Sequences: 3902068
Number of extensions: 1244661
Number of successful extensions: 18859
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18809
Number of HSP's gapped (non-prelim): 40
length of query: 270
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 248
effective length of database: 17,147,199,772
effective search space: 4252505543456
effective search space used: 4252505543456
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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