ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd19d18 |
|---|---|
| Clone Library Name | barley_pub |
>ACLY_MOUSE (Q91V92) ATP-citrate synthase (EC 2.3.3.8) (ATP-citrate| (pro-S-)-lyase) (Citrate cleavage enzyme) Length = 1091 Score = 200 bits (509), Expect = 3e-51 Identities = 97/174 (55%), Positives = 123/174 (70%) Frame = -2 Query: 691 PSESYIHELDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEY 512 P E+YI +LD K+ ASLK T+LNPKGRIWTMVAGGGASV+Y+DT+ DLG +EL NY EY Sbjct: 248 PEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNELANYGEY 307 Query: 511 SGAPKEEEVLHYARVVLDCATADPDGRKRALLIGGGIANFTDVAATFSGIIRALREKESK 332 SGAP E++ YA+ +L T + + L+IGG IANFT+VAATF GI+RA+R+ + Sbjct: 308 SGAPSEQQTYDYAKTILSLMTREKHPEGKILIIGGSIANFTNVAATFKGIVRAIRDYQGP 367 Query: 331 LKAARVNIYVRRGGPNYQTGLAKMRALGSELGLPIEVYGPEATMTGICKQAIDY 170 LK V I+VRRGGPNYQ GL M +G G+PI V+G E MT I A+ + Sbjct: 368 LKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMALGH 421
>ACLY_HUMAN (P53396) ATP-citrate synthase (EC 2.3.3.8) (ATP-citrate| (pro-S-)-lyase) (Citrate cleavage enzyme) Length = 1101 Score = 200 bits (508), Expect = 4e-51 Identities = 100/176 (56%), Positives = 126/176 (71%), Gaps = 2/176 (1%) Frame = -2 Query: 691 PSESYIHELDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEY 512 P E+YI +LD K+ ASLK T+LNPKGRIWTMVAGGGASV+Y+DT+ DLG +EL NY EY Sbjct: 248 PEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNELANYGEY 307 Query: 511 SGAPKEEEVLHYARVVLDCATAD--PDGRKRALLIGGGIANFTDVAATFSGIIRALREKE 338 SGAP E++ YA+ +L T + PDG + L+IGG IANFT+VAATF GI+RA+R+ + Sbjct: 308 SGAPSEQQTYDYAKTILSLMTREKHPDG--KILIIGGSIANFTNVAATFKGIVRAIRDYQ 365 Query: 337 SKLKAARVNIYVRRGGPNYQTGLAKMRALGSELGLPIEVYGPEATMTGICKQAIDY 170 LK V I+VRRGGPNYQ GL M +G G+PI V+G E MT I A+ + Sbjct: 366 GPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMALGH 421
>ACLY_RAT (P16638) ATP-citrate synthase (EC 2.3.3.8) (ATP-citrate| (pro-S-)-lyase) (Citrate cleavage enzyme) Length = 1100 Score = 199 bits (506), Expect = 7e-51 Identities = 100/173 (57%), Positives = 124/173 (71%), Gaps = 2/173 (1%) Frame = -2 Query: 691 PSESYIHELDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEY 512 P E+YI +LD K+ ASLK T+LNPKGRIWTMVAGGGASV+Y+DT+ DLG +EL NY EY Sbjct: 248 PEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNELANYGEY 307 Query: 511 SGAPKEEEVLHYARVVLDCATAD--PDGRKRALLIGGGIANFTDVAATFSGIIRALREKE 338 SGAP E++ YA+ +L T + PDG + L+IGG IANFT+VAATF GI+RA+R+ + Sbjct: 308 SGAPSEQQTYDYAKTILSLMTREKHPDG--KILIIGGSIANFTNVAATFKGIVRAIRDYQ 365 Query: 337 SKLKAARVNIYVRRGGPNYQTGLAKMRALGSELGLPIEVYGPEATMTGICKQA 179 LK V I+VRRGGPNYQ GL M +G G+PI V+G E MT I A Sbjct: 366 GSLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMA 418
>ACLY_CAEEL (P53585) Probable ATP-citrate synthase (EC 2.3.3.8) (ATP-citrate| (pro-S-)-lyase) (Citrate cleavage enzyme) Length = 1106 Score = 192 bits (488), Expect = 8e-49 Identities = 100/177 (56%), Positives = 122/177 (68%), Gaps = 3/177 (1%) Frame = -2 Query: 697 LSPSESYIHELDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYA 518 L+ E YI E+D KT ASLK T+LN KGR+WTMVAGGGASV++ DTV DLG ASEL NY Sbjct: 257 LTSEEQYISEMDAKTGASLKLTILNRKGRVWTMVAGGGASVVFTDTVCDLGGASELANYG 316 Query: 517 EYSGAPKEEEVLHYARVVLDC---ATADPDGRKRALLIGGGIANFTDVAATFSGIIRALR 347 EYSG P E + YA+ +L T PDG + L+IGG IANFT+VA TF GI+RA Sbjct: 317 EYSGDPSESQTYEYAKTLLSVMTEGTPRPDG--KVLIIGGSIANFTNVAKTFGGIVRAFE 374 Query: 346 EKESKLKAARVNIYVRRGGPNYQTGLAKMRALGSELGLPIEVYGPEATMTGICKQAI 176 SKLK +V I+VRRGGPNYQ GL +++ ++L LPI V+GPE MT I A+ Sbjct: 375 TFVSKLKEHKVTIFVRRGGPNYQEGLRRIKDAATKLELPIHVFGPETHMTAIVGAAL 431
>SUCC1_STRCO (Q9KY56) Succinyl-CoA synthetase beta chain 1 (EC 6.2.1.5)| (SCS-beta 1) Length = 394 Score = 34.7 bits (78), Expect = 0.29 Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 6/115 (5%) Frame = -2 Query: 598 VAGGGASVIYADTVGDLGYASEL------GNYAEYSGAPKEEEVLHYARVVLDCATADPD 437 + G GA ++ + T+ + YA E N+ + G + + + ++L DPD Sbjct: 254 IIGNGAGLVMS-TLDVVAYAGEAHGNVKPANFLDIGGGASAQVMANGLEIIL----GDPD 308 Query: 436 GRKRALLIGGGIANFTDVAATFSGIIRALREKESKLKAARVNIYVRRGGPNYQTG 272 R + + GGI +VA +GI++AL+ E + + + VR G N + G Sbjct: 309 VRSVFVNVFGGITACDEVA---NGIVQALKLLEDRGEKVEKPLVVRLDGNNAELG 360
>HCP_CHLTE (Q8KBT4) Hydroxylamine reductase (EC 1.7.-.-) (Hybrid-cluster| protein) (HCP) Length = 539 Score = 33.9 bits (76), Expect = 0.49 Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 3/66 (4%) Frame = -2 Query: 565 DTVGDLGYASELGNYAEYSGAPKEEEVLHYARVVLDCATADPDGRK-RALLIGG--GIAN 395 D V L + + A +SG+ KEE + A +D +ADPD R ++L++ G G+A Sbjct: 89 DEVRALAGTTPAHDAANWSGSTKEEFLAKAAACSIDSLSADPDLRSLKSLILYGIKGLAA 148 Query: 394 FTDVAA 377 +TD AA Sbjct: 149 YTDHAA 154
>SUCC_METTH (O27115) Succinyl-CoA synthetase beta chain (EC 6.2.1.5) (SCS-beta)| Length = 365 Score = 32.7 bits (73), Expect = 1.1 Identities = 39/149 (26%), Positives = 60/149 (40%) Frame = -2 Query: 670 ELDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPKEE 491 E++E F L+ G I + G G ++ D + G E + + G E+ Sbjct: 221 EMEEYEPEEFAFVKLD--GDIAVIGNGAGLTLTAMDLIKLNG---EPATFLDIGGGASED 275 Query: 490 EVLHYARVVLDCATADPDGRKRALLIGGGIANFTDVAATFSGIIRALREKESKLKAARVN 311 + R LD + P R L + GGI DVA G++ ALR+ V Sbjct: 276 VI----RRALDLVISHPSVRVVFLNVLGGITRADDVA---RGVVNALRDARRD-----VP 323 Query: 310 IYVRRGGPNYQTGLAKMRALGSELGLPIE 224 + +R G N + G +R E G+P E Sbjct: 324 LVIRLTGTNEEEGQRILR----EAGIPFE 348
>TJAP1_MOUSE (Q9DCD5) Tight junction-associated protein 1 (Tight junction| protein 4) (Protein incorporated later into tight junctions) Length = 539 Score = 30.8 bits (68), Expect = 4.1 Identities = 23/63 (36%), Positives = 28/63 (44%) Frame = +3 Query: 435 PSGSAVAQSKTTLA*CKTSSSLGAPLYSA*FPSSEAYPKSPTVSAYMTLAPPPATIVQMR 614 PS A AQ S+L AP SA SSE + A++ PPPA +VQ Sbjct: 361 PSSPASAQGSPHHQPSPAPSALSAPASSA---SSEEDLLASWQRAFVDRTPPPAAVVQRT 417 Query: 615 PFG 623 FG Sbjct: 418 AFG 420
>PGK_DESVH (P62412) Phosphoglycerate kinase (EC 2.7.2.3)| Length = 393 Score = 30.8 bits (68), Expect = 4.1 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 1/72 (1%) Frame = -2 Query: 421 LLIGGGIANFTDVAATFSGIIRALREKESKLKAARVNIYVRRGGPNYQTGLAKMRALGSE 242 L++GGGIAN AA + + ++L E E +AAR+ +A RA G E Sbjct: 211 LIVGGGIANNFIKAAGYE-VGKSLYEPELVEEAARL--------------MAAARAAGGE 255 Query: 241 LGLPIE-VYGPE 209 + +P++ V GPE Sbjct: 256 IPVPLDVVVGPE 267
>BCSA_SALTY (Q93IN2) Cellulose synthase catalytic subunit [UDP-forming] (EC| 2.4.1.12) Length = 874 Score = 30.8 bits (68), Expect = 4.1 Identities = 30/122 (24%), Positives = 49/122 (40%) Frame = -2 Query: 532 LGNYAEYSGAPKEEEVLHYARVVLDCATADPDGRKRALLIGGGIANFTDVAATFSGIIRA 353 LG S K+ H + + A A DG L + +F+D G+ Sbjct: 682 LGGAVAVSVESKQVRRAHRVEIAMPGAIAREDGH----LFSCTVHDFSD-----GGLGIK 732 Query: 352 LREKESKLKAARVNIYVRRGGPNYQTGLAKMRALGSELGLPIEVYGPEATMTGICKQAID 173 + + L+ +VN+ ++RG Y +R G+E+GL + M KQ ID Sbjct: 733 INGQAQVLEGQKVNLLLKRGQQEYVFPTQVVRVTGNEVGLQL--------MPLTTKQHID 784 Query: 172 YV 167 +V Sbjct: 785 FV 786
>BCSA_SALTI (Q8Z291) Cellulose synthase catalytic subunit [UDP-forming] (EC| 2.4.1.12) Length = 874 Score = 30.8 bits (68), Expect = 4.1 Identities = 30/122 (24%), Positives = 49/122 (40%) Frame = -2 Query: 532 LGNYAEYSGAPKEEEVLHYARVVLDCATADPDGRKRALLIGGGIANFTDVAATFSGIIRA 353 LG S K+ H + + A A DG L + +F+D G+ Sbjct: 682 LGGAVAVSVESKQVRRAHRVEIAMPGAIAREDGH----LFSCTVHDFSD-----GGLGIK 732 Query: 352 LREKESKLKAARVNIYVRRGGPNYQTGLAKMRALGSELGLPIEVYGPEATMTGICKQAID 173 + + L+ +VN+ ++RG Y +R G+E+GL + M KQ ID Sbjct: 733 INGQAQVLEGQKVNLLLKRGQQEYVFPTQVVRVTGNEVGLQL--------MPLTTKQHID 784 Query: 172 YV 167 +V Sbjct: 785 FV 786
>CHI2_CANAL (P40953) Chitinase 2 precursor (EC 3.2.1.14)| Length = 583 Score = 30.8 bits (68), Expect = 4.1 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%) Frame = -2 Query: 526 NYAEYSGAPKEEEVLHYARVVLDCATADPDGRKRALLIGGGIAN--FTDVAA 377 N+A G E +LH +++ D T G+ L +GGG+ + F+DVA+ Sbjct: 67 NFANQCGNTFESGLLHCSQIGADIKTCQSLGKTVLLSLGGGVGDYGFSDVAS 118
>PHSH_VICFA (P53537) Alpha-glucan phosphorylase, H isozyme (EC 2.4.1.1) (Starch| phosphorylase H) Length = 842 Score = 30.4 bits (67), Expect = 5.4 Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 11/104 (10%) Frame = -2 Query: 442 PDGRK----RALLIGG-GIANFTD------VAATFSGIIRALREKESKLKAARVNIYVRR 296 P+ RK R ++IGG A +T+ + ++ + E S LK V Sbjct: 600 PEERKSTTARTVMIGGKAFATYTNAKRIVKLVDDVGSVVNSDPEVNSYLKVVFV------ 653 Query: 295 GGPNYQTGLAKMRALGSELGLPIEVYGPEATMTGICKQAIDYVM 164 PNY +A++ GSEL I G EA+ T K A++ V+ Sbjct: 654 --PNYNVSVAEVLIPGSELSQHISTAGMEASGTSNMKFALNRVL 695
>TEAD3_HUMAN (Q99594) Transcriptional enhancer factor TEF-5 (TEA domain family| member 3) (TEAD-3) (DTEF-1) Length = 435 Score = 29.6 bits (65), Expect = 9.2 Identities = 35/129 (27%), Positives = 53/129 (41%), Gaps = 9/129 (6%) Frame = +3 Query: 318 LAAFNLDSFSLK------ARMMPLNVAATSV---KFAIPPPMRRALFRPSGSAVAQSKTT 470 + A NLD S A M + + SV KF+ P P+ +A+F S S S Sbjct: 109 IKAMNLDQVSKDKALQSMASMSSAQIVSASVLQNKFSPPSPLPQAVFSTS-SRFWSSPPL 167 Query: 471 LA*CKTSSSLGAPLYSA*FPSSEAYPKSPTVSAYMTLAPPPATIVQMRPFGLRTVNFSDA 650 L S P +P P PT+S+Y LAP P+ + + RT+ S Sbjct: 168 LGQQPGPSQDIKPFAQPAYPIQPPLP--PTLSSYEPLAPLPSAAASVPVWQDRTIASSRL 225 Query: 651 LVFSSSSWI 677 + S+++ Sbjct: 226 RLLEYSAFM 234
>BCSA_ECOLI (P37653) Cellulose synthase catalytic subunit [UDP-forming] (EC| 2.4.1.12) Length = 872 Score = 29.6 bits (65), Expect = 9.2 Identities = 24/102 (23%), Positives = 42/102 (41%) Frame = -2 Query: 532 LGNYAEYSGAPKEEEVLHYARVVLDCATADPDGRKRALLIGGGIANFTDVAATFSGIIRA 353 LG S K+ H + + A A DG L + +F+D G+ Sbjct: 682 LGGAVAVSVESKQVRRSHRVEMTMPAAIAREDGH----LFSCTVQDFSD-----GGLGIK 732 Query: 352 LREKESKLKAARVNIYVRRGGPNYQTGLAKMRALGSELGLPI 227 + + L+ +VN+ ++RG Y R +G+E+GL + Sbjct: 733 INGQAQILEGQKVNLLLKRGQQEYVFPTQVARVMGNEVGLKL 774
>BCSA_ECO57 (Q8X5L7) Cellulose synthase catalytic subunit [UDP-forming] (EC| 2.4.1.12) Length = 872 Score = 29.6 bits (65), Expect = 9.2 Identities = 24/102 (23%), Positives = 42/102 (41%) Frame = -2 Query: 532 LGNYAEYSGAPKEEEVLHYARVVLDCATADPDGRKRALLIGGGIANFTDVAATFSGIIRA 353 LG S K+ H + + A A DG L + +F+D G+ Sbjct: 682 LGGAVAVSVESKQVRRSHRVEMTMPAAIAREDGH----LFSCTVQDFSD-----GGLGIK 732 Query: 352 LREKESKLKAARVNIYVRRGGPNYQTGLAKMRALGSELGLPI 227 + + L+ +VN+ ++RG Y R +G+E+GL + Sbjct: 733 INGQAQILEGQKVNLLLKRGQQEYVFPTQVARVMGNEVGLKL 774
>UL76_HCMVA (P16725) Protein UL76| Length = 325 Score = 29.6 bits (65), Expect = 9.2 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Frame = -2 Query: 385 VAATFSGIIRALREKESKLKAARVNIYVR-RGGPNYQTGLAKMRALG 248 +AAT ++R R K + L AR + RGG N + GLA+ RA G Sbjct: 201 LAATRRRLLRTARGKRAALPRARASAVAGGRGGDNARRGLARGRAHG 247 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 107,253,303 Number of Sequences: 219361 Number of extensions: 2347031 Number of successful extensions: 6967 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 6716 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6960 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 6969622431 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
