ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd18o16 |
|---|---|
| Clone Library Name | barley_pub |
>UMP6_ARATH (Q9SX77) Unknown protein At1g47420, mitochondrial precursor| Length = 257 Score = 112 bits (280), Expect = 4e-25 Identities = 52/91 (57%), Positives = 69/91 (75%) Frame = +1 Query: 49 RMFSSNEKHLPPISDPKIETAFKDLMAASWNELPGSLVEEAKKEVSKATDDKAGQEALEN 228 R FS + H+P + D + AFKDLMAA W ELP ++V++AK +SK TDDKAGQEAL+N Sbjct: 87 RRFSEDVSHMPEMEDSDVLNAFKDLMAADWAELPSAVVKDAKTAISKNTDDKAGQEALKN 146 Query: 229 VFRAAEACEEFSGVLVTLRMALDDLCGLTGE 321 VFRAAEA EEF G+L +++M +DD G++GE Sbjct: 147 VFRAAEAVEEFGGILTSIKMEIDDSIGMSGE 177
>PHO1_ARATH (Q8S403) Putative phosphate transporter 1| Length = 782 Score = 33.5 bits (75), Expect = 0.22 Identities = 19/69 (27%), Positives = 31/69 (44%) Frame = +2 Query: 65 MRNICLQYLTRKLRLHLRI*WLPAGMSFRVXXXXXXXXXXXXXXMIRLVKKLWKMYFVQL 244 +RN YL+ L L LR+ W+ M FRV + + + W Y V+ Sbjct: 697 LRNKNFYYLSIALNLVLRVAWIETIMRFRVSPVQSHLLDFFLASLEVIRRGHWNFYRVEN 756 Query: 245 KHVKNLVEF 271 +H+ N+ +F Sbjct: 757 EHLNNVGQF 765
>VHP1_CAEEL (Q10038) Tyrosine-protein phosphatase vhp-1 (EC 3.1.3.48) (Vh1 dual| specificity phosphatase family protein 1) Length = 657 Score = 31.6 bits (70), Expect = 0.83 Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 4/87 (4%) Frame = -1 Query: 320 SPVRP-QRSSRAILRVTKTPLNSSHASAARNT---FSKAS*PALSSVALDTSFFASSTRE 153 SP+ P SSR ++ TP SS +S + FS + SS+ ++ FFAS+ Sbjct: 481 SPIIPVASSSREVILTLPTPAASSSSSTSSEPSFDFSSFESSSSSSIVVENPFFASTEVP 540 Query: 152 PGSSFQLAAIKSLNAVSIFGSDIGGRC 72 GSS S + + S RC Sbjct: 541 AGSSSISTPSGSQSTPASASSSAASRC 567
>ATR_YEAST (P38111) Serine/threonine-protein kinase MEC1 (EC 2.7.11.1)| (DNA-damage checkpoint kinase MEC1) (Mitosis entry checkpoint protein 1) (ATR homolog) Length = 2368 Score = 30.0 bits (66), Expect = 2.4 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 2/47 (4%) Frame = +1 Query: 94 PKIETAFKDLMAASWNELPGSLVEEAKKEVSKATDDKAG--QEALEN 228 PK+ T + D+ AAS +E PG+ K+ +SKAT+D +EAL++ Sbjct: 1849 PKVITFWLDIAAASISEAPGN----RKEMLSKATEDICSHVEEALQH 1891
>GDA2_WHEAT (P04722) Alpha/beta-gliadin A-II precursor (Prolamin)| Length = 291 Score = 30.0 bits (66), Expect = 2.4 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 4/66 (6%) Frame = -2 Query: 268 LH*ILHMLQLHEIHF--PKLLDQPYHQXXXXXXXXLPQQENPEAHSSWQPS--NP*MQSQ 101 +H ++H + LH+ H + Q Q PQQ+ P +QPS NP Q Sbjct: 189 IHNVVHAIILHQQHHHHQQQQQQQQQQPLSQVSFQQPQQQYPSGQGFFQPSQQNPQAQGS 248 Query: 100 FSGQIL 83 F Q L Sbjct: 249 FQPQQL 254
>GPA8_DICDI (P34046) Guanine nucleotide-binding protein alpha-8 subunit (G| alpha-8) Length = 403 Score = 29.3 bits (64), Expect = 4.1 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = +1 Query: 82 PISDPKIETAFKDLMAASWNELPGSLVEEAKKEVSKATDD 201 P+ I +K + +W E G L+EE KK + KAT D Sbjct: 316 PLHTFHIAARYKKDIKYTWEEAKGILLEENKKVLMKATKD 355
>SPN90_HUMAN (Q9NZQ3) SH3 adapter protein SPIN90 (NCK-interacting protein with| SH3 domain) (SH3 protein interacting with Nck, 90 kDa) (VacA-interacting protein, 54 kDa) (VIP54) (AF3p21) (Diaphanous protein-interacting protein) (Dia-interacting protein 1) Length = 722 Score = 28.9 bits (63), Expect = 5.4 Identities = 20/61 (32%), Positives = 32/61 (52%) Frame = -1 Query: 323 TSPVRPQRSSRAILRVTKTPLNSSHASAARNTFSKAS*PALSSVALDTSFFASSTREPGS 144 T P +R R L + + +++ S + S +S +SS +LDT + +SS EPGS Sbjct: 181 TPPPPVKRRDREALMASGSGGHNTMPSGGNSVSSGSS---VSSTSLDTLYTSSSPSEPGS 237 Query: 143 S 141 S Sbjct: 238 S 238
>GDA9_WHEAT (P18573) Alpha/beta-gliadin MM1 precursor (Prolamin)| Length = 307 Score = 28.9 bits (63), Expect = 5.4 Identities = 18/60 (30%), Positives = 27/60 (45%) Frame = -2 Query: 268 LH*ILHMLQLHEIHFPKLLDQPYHQXXXXXXXXLPQQENPEAHSSWQPSNP*MQSQFSGQ 89 +H ++H + LH+ + Q Q PQQ+ P S+QPS Q+Q S Q Sbjct: 209 IHNVVHAIILHQQQQQQ--QQQQQQPLSQVSFQQPQQQYPSGQGSFQPSQQNPQAQGSVQ 266
>ISTA_PSEAE (P15025) Transposase for insertion sequence element IS21| Length = 390 Score = 28.5 bits (62), Expect = 7.1 Identities = 10/37 (27%), Positives = 20/37 (54%) Frame = +1 Query: 31 FSWNSRRMFSSNEKHLPPISDPKIETAFKDLMAASWN 141 F + F+ ++HL P+ D +T++ D+ SW+ Sbjct: 273 FKETPEQRFALEQEHLQPLPDTDFDTSYFDIRHVSWD 309
>GDA6_WHEAT (P04726) Alpha/beta-gliadin clone PW1215 precursor (Prolamin)| Length = 296 Score = 28.5 bits (62), Expect = 7.1 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 6/54 (11%) Frame = -2 Query: 268 LH*ILHMLQLHEIHFPKL------LDQPYHQXXXXXXXXLPQQENPEAHSSWQP 125 +H ++H + LH+ + L QP Q P Q+NP+A S QP Sbjct: 201 IHNVVHAIILHQQQRQQQPSSQVSLQQPQQQYPSGQGFFQPSQQNPQAQGSVQP 254
>PAPOA_BOVIN (P25500) Poly(A) polymerase alpha (EC 2.7.7.19) (PAP)| (Polynucleotide adenylyltransferase alpha) Length = 738 Score = 28.1 bits (61), Expect = 9.2 Identities = 23/93 (24%), Positives = 45/93 (48%) Frame = -1 Query: 362 AIHKQGKKGD*VLTSPVRPQRSSRAILRVTKTPLNSSHASAARNTFSKAS*PALSSVALD 183 A+H + K+ +L S V ++ + V TPLN S + ++ + S P+ +S A+ Sbjct: 484 AMHVKRKQLHQLLPSHVLQKKKKHSTEGVKLTPLNDSSLDLSMDSDNSMSVPSPTS-AMK 542 Query: 182 TSFFASSTREPGSSFQLAAIKSLNAVSIFGSDI 84 TS SS G + A+ + + +I +++ Sbjct: 543 TSPLNSSGSSQGRNSPAPAVTAASVTNIQATEV 575
>RP3A_HUMAN (Q9Y2J0) Rabphilin-3A (Exophilin-1)| Length = 694 Score = 28.1 bits (61), Expect = 9.2 Identities = 18/69 (26%), Positives = 35/69 (50%) Frame = +1 Query: 52 MFSSNEKHLPPISDPKIETAFKDLMAASWNELPGSLVEEAKKEVSKATDDKAGQEALENV 231 +FS++ SD +++ K+ + A W+ PG + +K+ + TD++ +E + V Sbjct: 5 VFSNSSNRWMYPSDRPLQSNDKEQLQAGWSVHPGGQPDRQRKQ-EELTDEE--KEIINRV 61 Query: 232 FRAAEACEE 258 AE EE Sbjct: 62 IARAEKMEE 70
>MURD_CLOTE (Q899G5) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC| 6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase) (D-glutamic acid-adding enzyme) Length = 458 Score = 28.1 bits (61), Expect = 9.2 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 2/69 (2%) Frame = +1 Query: 61 SNEKHLPPISDPK--IETAFKDLMAASWNELPGSLVEEAKKEVSKATDDKAGQEALENVF 234 S+ KHL + D K IE AFK +M S +LP S+ ++ ++ A ++ G+ +V Sbjct: 374 SHIKHLILLGDTKYKIEEAFKKVMRDSSEDLPISICNSIEEAINIAKEN--GESG--DVV 429 Query: 235 RAAEACEEF 261 + AC F Sbjct: 430 TLSPACASF 438
>DIM_PEA (P93472) Cell elongation protein diminuto| Length = 567 Score = 28.1 bits (61), Expect = 9.2 Identities = 16/46 (34%), Positives = 23/46 (50%) Frame = +2 Query: 212 KKLWKMYFVQLKHVKNLVEF*LP*EWLLMIFVV*PVRSVLNHLSSL 349 KK+W YFV+ + W+L+IFVV P+ L L+ L Sbjct: 13 KKIWVDYFVKFR-------------WILVIFVVLPISFTLYFLTYL 45
>DCTS_BACHD (Q9K997) Probable C4-dicarboxylate sensor kinase (EC 2.7.13.3)| Length = 532 Score = 28.1 bits (61), Expect = 9.2 Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%) Frame = +1 Query: 208 GQEALENVFRAAEACEEFSGVLVTLRMALDDLCG-LTGEVS 327 G++AL+ +F E EEFSGV V ++ D L G L G+VS Sbjct: 357 GKKALQYIFDLEEEQEEFSGV-VMQKIHNDSLAGLLLGKVS 396
>BIOX_BACSH (P22821) Protein bioX| Length = 166 Score = 28.1 bits (61), Expect = 9.2 Identities = 15/47 (31%), Positives = 25/47 (53%) Frame = -1 Query: 233 NTFSKAS*PALSSVALDTSFFASSTREPGSSFQLAAIKSLNAVSIFG 93 +T+ A L+ + + T F T PGS FQL+A ++ ++FG Sbjct: 5 STYDLAQISLLACLIIVTGMFKIPTGIPGSEFQLSAPIAVAIAAVFG 51 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,358,343 Number of Sequences: 219361 Number of extensions: 1117080 Number of successful extensions: 3235 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3161 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3235 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
