ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd19d15 |
|---|---|
| Clone Library Name | barley_pub |
>PSDE_ARATH (Q9LT08) 26S proteasome non-ATPase regulatory subunit 14 (26S| proteasome regulatory subunit rpn11) Length = 308 Score = 260 bits (665), Expect = 3e-69 Identities = 132/158 (83%), Positives = 138/158 (87%) Frame = -2 Query: 717 KGKVVIDAFRLINPQTMMLGQEPRQTTSNVGHLNKPSIQALIHGLNRHYYSIAINYRXXX 538 KGKVVIDAFR INPQT+MLGQEPRQTTSN+GHLNKPSIQALIHGLNRHYYSIAINYR Sbjct: 151 KGKVVIDAFRSINPQTIMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNE 210 Query: 537 XXXXXXXXXXXXKWTDGLIIKKFDTHSKTNEETVQEMLSLAIKYNKAVQEEDELPPEKLA 358 KWTDGL +++FDTHSKTNE+TVQEMLSLA KYNKAVQEEDEL PEKLA Sbjct: 211 LEEKMLLNLHKKKWTDGLTLRRFDTHSKTNEQTVQEMLSLAAKYNKAVQEEDELSPEKLA 270 Query: 357 IANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVVF 244 I NVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVVF Sbjct: 271 IVNVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVVF 308
>PSDE_MOUSE (O35593) 26S proteasome non-ATPase regulatory subunit 14 (26S| proteasome regulatory subunit rpn11) (MAD1) Length = 310 Score = 206 bits (523), Expect = 8e-53 Identities = 103/158 (65%), Positives = 117/158 (74%) Frame = -2 Query: 717 KGKVVIDAFRLINPQTMMLGQEPRQTTSNVGHLNKPSIQALIHGLNRHYYSIAINYRXXX 538 KGKVVIDAFRLIN M+LG EPRQTTSN+GHLNKPSIQALIHGLNRHYYSI INYR Sbjct: 152 KGKVVIDAFRLINANMMVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINYRKNE 211 Query: 537 XXXXXXXXXXXXKWTDGLIIKKFDTHSKTNEETVQEMLSLAIKYNKAVQEEDELPPEKLA 358 W +GL ++ + H K NE V+EML LA YNKAV+EED++ PE+LA Sbjct: 212 LEQKMLLNLHKKSWMEGLTLQDYSEHCKHNESVVKEMLELAKNYNKAVEEEDKMTPEQLA 271 Query: 357 IANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVVF 244 I NVG+QD K+HLEEHV LM+SNIVQ L MLDTVVF Sbjct: 272 IKNVGKQDPKRHLEEHVDVLMTSNIVQCLAAMLDTVVF 309
>PSDE_HUMAN (O00487) 26S proteasome non-ATPase regulatory subunit 14 (26S| proteasome regulatory subunit rpn11) (26S proteasome-associated PAD1 homolog 1) Length = 310 Score = 206 bits (523), Expect = 8e-53 Identities = 103/158 (65%), Positives = 117/158 (74%) Frame = -2 Query: 717 KGKVVIDAFRLINPQTMMLGQEPRQTTSNVGHLNKPSIQALIHGLNRHYYSIAINYRXXX 538 KGKVVIDAFRLIN M+LG EPRQTTSN+GHLNKPSIQALIHGLNRHYYSI INYR Sbjct: 152 KGKVVIDAFRLINANMMVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINYRKNE 211 Query: 537 XXXXXXXXXXXXKWTDGLIIKKFDTHSKTNEETVQEMLSLAIKYNKAVQEEDELPPEKLA 358 W +GL ++ + H K NE V+EML LA YNKAV+EED++ PE+LA Sbjct: 212 LEQKMLLNLHKKSWMEGLTLQDYSEHCKHNESVVKEMLELAKNYNKAVEEEDKMTPEQLA 271 Query: 357 IANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVVF 244 I NVG+QD K+HLEEHV LM+SNIVQ L MLDTVVF Sbjct: 272 IKNVGKQDPKRHLEEHVDVLMTSNIVQCLAAMLDTVVF 309
>PSDE_DROME (Q9V3H2) 26S proteasome non-ATPase regulatory subunit 14 (26S| proteasome regulatory subunit rpn11) (26S proteasome regulatory complex subunit p37B) (Yippee-interacting protein 5) Length = 308 Score = 201 bits (511), Expect = 2e-51 Identities = 96/158 (60%), Positives = 118/158 (74%) Frame = -2 Query: 717 KGKVVIDAFRLINPQTMMLGQEPRQTTSNVGHLNKPSIQALIHGLNRHYYSIAINYRXXX 538 KGKVVIDAFRLINP ++LGQEPRQTTSN+GHL KPS+QALIHGLNRHYYSI+INYR Sbjct: 150 KGKVVIDAFRLINPNMLVLGQEPRQTTSNLGHLQKPSVQALIHGLNRHYYSISINYRKNE 209 Query: 537 XXXXXXXXXXXXKWTDGLIIKKFDTHSKTNEETVQEMLSLAIKYNKAVQEEDELPPEKLA 358 W DGL + ++ H NE+TV EML LA YNK++++E+++ PE+LA Sbjct: 210 LEQKMLLNLHKKSWKDGLTLSDYNEHCSINEDTVAEMLDLAKNYNKSLEDEEKMTPEQLA 269 Query: 357 IANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVVF 244 I NVG+QD K+HLEE V +M +NIVQ LG MLDT+VF Sbjct: 270 IKNVGKQDPKRHLEEKVDKVMQNNIVQCLGAMLDTIVF 307
>RPN11_SCHPO (P41878) 26S proteasome regulatory subunit rpn11 (Protein pad1)| Length = 308 Score = 168 bits (425), Expect = 2e-41 Identities = 82/158 (51%), Positives = 107/158 (67%) Frame = -2 Query: 717 KGKVVIDAFRLINPQTMMLGQEPRQTTSNVGHLNKPSIQALIHGLNRHYYSIAINYRXXX 538 KGKVVIDAFRLINP T+M+GQEPRQTTSN+GH+NKPSIQALIHGL RHYYS+ INY+ Sbjct: 151 KGKVVIDAFRLINPSTLMMGQEPRQTTSNLGHINKPSIQALIHGLGRHYYSLRINYKKTE 210 Query: 537 XXXXXXXXXXXXKWTDGLIIKKFDTHSKTNEETVQEMLSLAIKYNKAVQEEDELPPEKLA 358 W GL+++ F++ ++ N ++ +M SL+ +Y + VQ E L PE+L Sbjct: 211 LEEIMLLNLHKQPWAHGLLLENFNSAAEKNHASIDKMKSLSEQYTERVQNEVTLSPEQLR 270 Query: 357 IANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVVF 244 I VG+QD KKHL+ V + +NI L MLD+V F Sbjct: 271 IQYVGKQDPKKHLDAEVQKCIDNNISSMLACMLDSVAF 308
>PSDE_CAEEL (O76577) 26S proteasome non-ATPase regulatory subunit 14 (26S| proteasome regulatory subunit rpn11) Length = 312 Score = 161 bits (408), Expect = 2e-39 Identities = 79/155 (50%), Positives = 104/155 (67%) Frame = -2 Query: 717 KGKVVIDAFRLINPQTMMLGQEPRQTTSNVGHLNKPSIQALIHGLNRHYYSIAINYRXXX 538 KGKVVIDAFR INPQ+M L QEPRQTTSN+GHL KPSIQALIHGLNRHYYSI I YR Sbjct: 154 KGKVVIDAFRTINPQSMALNQEPRQTTSNLGHLQKPSIQALIHGLNRHYYSIPIAYRTHD 213 Query: 537 XXXXXXXXXXXXKWTDGLIIKKFDTHSKTNEETVQEMLSLAIKYNKAVQEEDELPPEKLA 358 W D + ++ + + N+E ++ ML LA Y KA+++E + ++LA Sbjct: 214 LEQKMLLNLNKLSWMDAVSVENYSKCGEQNKEHLKAMLKLAKNYKKALEDEKNMTDQELA 273 Query: 357 IANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDT 253 I NVG+ D K+H+ + VS +++ NIVQ+L M+ T Sbjct: 274 IKNVGKMDPKRHIADEVSKMLNDNIVQSLAGMMAT 308
>RPN11_ASHGO (Q750E9) 26S proteasome regulatory subunit RPN11| Length = 311 Score = 140 bits (352), Expect = 5e-33 Identities = 71/156 (45%), Positives = 97/156 (62%) Frame = -2 Query: 717 KGKVVIDAFRLINPQTMMLGQEPRQTTSNVGHLNKPSIQALIHGLNRHYYSIAINYRXXX 538 KGKVVIDAFRLI+P T++ QEPRQTTSNVG LNKP+IQ+LIHGLNRHYYS+ I+Y Sbjct: 153 KGKVVIDAFRLISPATVVRNQEPRQTTSNVGLLNKPNIQSLIHGLNRHYYSLNIDYHKTS 212 Query: 537 XXXXXXXXXXXXKWTDGLIIKKFDTHSKTNEETVQEMLSLAIKYNKAVQEEDELPPEKLA 358 +W GL + + + N E ++ + +A +Y K ++EE EL ++L Sbjct: 213 AELNMLMNLHKEQWQSGLKMHDYKEKERINLEATKKSVRIAEQYTKRIEEEKELTEDELK 272 Query: 357 IANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTV 250 VG+QD KKHL E ++ NIV L +++V Sbjct: 273 TRYVGKQDPKKHLSETAERVLEENIVSVLTAGVNSV 308
>RPN11_YEAST (P43588) 26S proteasome regulatory subunit RPN11 (MPR1 protein)| Length = 306 Score = 132 bits (331), Expect = 1e-30 Identities = 69/156 (44%), Positives = 94/156 (60%) Frame = -2 Query: 717 KGKVVIDAFRLINPQTMMLGQEPRQTTSNVGHLNKPSIQALIHGLNRHYYSIAINYRXXX 538 KGKVVIDAFRLI+ ++ EPRQTTSN G LNK +IQALIHGLNRHYYS+ I+Y Sbjct: 148 KGKVVIDAFRLIDTGALINNLEPRQTTSNTGLLNKANIQALIHGLNRHYYSLNIDYHKTA 207 Query: 537 XXXXXXXXXXXXKWTDGLIIKKFDTHSKTNEETVQEMLSLAIKYNKAVQEEDELPPEKLA 358 +W GL + ++ ++N + M+ +A +Y+K ++EE EL E+L Sbjct: 208 KETKMLMNLHKEQWQSGLKMYDYEEKEESNLAATKSMVKIAEQYSKRIEEEKELTEEELK 267 Query: 357 IANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTV 250 VGRQD KKHL E + +NIV L +++V Sbjct: 268 TRYVGRQDPKKHLSETADETLENNIVSVLTAGVNSV 303
>RPN11_CANGA (Q6FKS1) 26S proteasome regulatory subunit RPN11| Length = 306 Score = 130 bits (327), Expect = 4e-30 Identities = 67/156 (42%), Positives = 94/156 (60%) Frame = -2 Query: 717 KGKVVIDAFRLINPQTMMLGQEPRQTTSNVGHLNKPSIQALIHGLNRHYYSIAINYRXXX 538 KGKVVIDAFRLI+ ++ QEPRQTTSN G +NK +IQALIHGLNRHYYS+ I+Y Sbjct: 148 KGKVVIDAFRLIDTGALINNQEPRQTTSNSGLMNKANIQALIHGLNRHYYSLNIDYHKTP 207 Query: 537 XXXXXXXXXXXXKWTDGLIIKKFDTHSKTNEETVQEMLSLAIKYNKAVQEEDELPPEKLA 358 +W GL ++ + N E + M+++A +Y+K ++EE EL E+L Sbjct: 208 AETKMLLNLHKEQWQSGLKMQDYQEKETENLEATKRMVAVAQQYSKRIEEEKELSEEELK 267 Query: 357 IANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTV 250 VG+QD KKHL + N + N V L ++++ Sbjct: 268 TRYVGKQDPKKHLAKTAENTLEENTVSVLTAGVNSI 303
>YPT5_CAEEL (P41883) Hypothetical protein F37A4.5 in chromosome III| Length = 319 Score = 90.9 bits (224), Expect = 4e-18 Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 11/165 (6%) Frame = -2 Query: 717 KGKVVIDAFRLINPQTMMLGQ-----EPRQTTSNVGHLNKPSIQALIHGLNRHYYSIAIN 553 KGKV++DAFR +NP + + EPRQTTSN+GHL KPS+ +++HGL YYS+ + Sbjct: 150 KGKVMLDAFRSVNPLNLQIRPLAPTAEPRQTTSNLGHLTKPSLISVVHGLGTKYYSLNVA 209 Query: 552 YRXXXXXXXXXXXXXXXKWTDGLIIKKFDTHSKTNEETVQEMLSLAIKYNKAVQEEDELP 373 YR W D L + + K EE + + L +NK + E E P Sbjct: 210 YRMGSNEQKMLMCLNKKSWYDQLNMSTYSELEKKQEEKFKSINKLIAVFNKDIDEVKEKP 269 Query: 372 ------PEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLD 256 + + G+ +AK+ L+ S+L++ ++ L M++ Sbjct: 270 IADKKGKTQEEVKKFGKINAKQQLQMITSSLLNDSLCHQLTAMIN 314
>VL3_REOVL (P17376) Minor core protein lambda-3| Length = 1267 Score = 32.0 bits (71), Expect = 1.9 Identities = 15/31 (48%), Positives = 20/31 (64%) Frame = -2 Query: 492 DGLIIKKFDTHSKTNEETVQEMLSLAIKYNK 400 DGL+I +T K N ET+Q+ML L KY + Sbjct: 735 DGLMIIDGNTAGKVNSETIQKMLELISKYGE 765
>H2AW_MOUSE (Q8CCK0) Core histone macro-H2A.2 (Histone macroH2A2) (mH2A2)| Length = 371 Score = 30.4 bits (67), Expect = 5.7 Identities = 9/37 (24%), Positives = 24/37 (64%) Frame = -2 Query: 699 DAFRLINPQTMMLGQEPRQTTSNVGHLNKPSIQALIH 589 D F +++ ++++LGQ+ T S++ H+ ++ ++H Sbjct: 180 DGFTILSSKSLVLGQKLSLTQSDISHIGSMRVEGIVH 216
>H2AW_HUMAN (Q9P0M6) Core histone macro-H2A.2 (Histone macroH2A2) (mH2A2)| Length = 371 Score = 30.4 bits (67), Expect = 5.7 Identities = 9/37 (24%), Positives = 24/37 (64%) Frame = -2 Query: 699 DAFRLINPQTMMLGQEPRQTTSNVGHLNKPSIQALIH 589 D F +++ ++++LGQ+ T S++ H+ ++ ++H Sbjct: 180 DGFTILSSKSLVLGQKLSLTQSDISHIGSMRVEGIVH 216
>YGF6_YEAST (P53172) Hypothetical 58.1 kDa protein in UBC2-OLE1 intergenic| region Length = 527 Score = 30.4 bits (67), Expect = 5.7 Identities = 14/52 (26%), Positives = 29/52 (55%) Frame = -2 Query: 702 IDAFRLINPQTMMLGQEPRQTTSNVGHLNKPSIQALIHGLNRHYYSIAINYR 547 I + +++PQ ++G + ++V H+ + S L+H RH+ S+ +N R Sbjct: 298 ISSIAVVDPQGNLIGNI---SVTDVKHVTRTSQYPLLHNTCRHFVSVILNLR 346 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 97,378,086 Number of Sequences: 219361 Number of extensions: 1820668 Number of successful extensions: 4691 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4548 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4688 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7309604013 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
