Clone Name | rbasd19d14 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_466265.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1187 Score = 482 bits (243), Expect = e-133 Identities = 417/475 (87%) Strand = Plus / Minus Query: 122 gcctgaaccacctgtgcctttcagcacctcgtgcaccgcagaaaaatccaggtcgccaag 181 |||||| ||||||| ||| ||||| ||||||| ||||| || ||||||||||| || || Sbjct: 975 gcctgagccacctgcgcccttcagtacctcgtaaaccgctgagaaatccaggtcccctag 916 Query: 182 tcccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggagac 241 |||||||||||||||||||||||| ||||| || | ||||||||| |||||||||||||| Sbjct: 915 tcccaagcttcttgctttcttgaacgcctcgttggaagcagctgccactggcatggagac 856 Query: 242 ggcattttcatctcccaatgacagagccagcctcatatccttctgctgatgtttgagggg 301 || || || ||||| | | || |||| |||||||||||||||||| ||||| ||||| Sbjct: 855 agcgttctcgtctcctagggcaagtgccaacctcatatccttctgctggtgtttcagggg 796 Query: 302 aaatgctggattgtagctgccctgtagcatcgaaggccctttcatcttgaacatcggatt 361 |||||| || ||||||||||| || |||||||| |||||||||| ||||||||| ||||| Sbjct: 795 aaatgcagggttgtagctgccttgcagcatcgagggccctttcagcttgaacattggatt 736 Query: 362 tgcgatggcaccgagatccaggacatcaagaagcgtctgggggctcaacccacttttgtc 421 |||||||| || || ||||||||||||||||| |||||||||||||| ||||| || || Sbjct: 735 cgcgatggcgccaaggtccaggacatcaagaagtgtctgggggctcaaaccactgttatc 676 Query: 422 agccaaacagagtccctcggagaaagcattcatcatacttcccatgatcatgttgaccac 481 ||||| | |||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct: 675 agccagagagagtccctcagacaaagcattcatcatacttcccatgatcatgttgaccac 616 Query: 482 cagtttcatctttgctccatttcccatctcccccagaaagaacgacttcttcccaagtat 541 |||||||||||||||||||||||| ||||| |||| |||||||||||| |||||||||| Sbjct: 615 cagtttcatctttgctccatttccaatctctcccaaaaagaacgactttttcccaagtac 556 Query: 542 gtcaaatgcagggaccatgtcatcatatagtgccttgtcgcctgcagcaagaatg 596 ||||||||||||||||| |||||||| | | ||||||| ||||||||||||||| Sbjct: 555 atcaaatgcagggaccatatcatcatacaataccttgtcccctgcagcaagaatg 501
>ref|XM_507487.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1712_E04.5 mRNA Length = 1235 Score = 482 bits (243), Expect = e-133 Identities = 417/475 (87%) Strand = Plus / Minus Query: 122 gcctgaaccacctgtgcctttcagcacctcgtgcaccgcagaaaaatccaggtcgccaag 181 |||||| ||||||| ||| ||||| ||||||| ||||| || ||||||||||| || || Sbjct: 978 gcctgagccacctgcgcccttcagtacctcgtaaaccgctgagaaatccaggtcccctag 919 Query: 182 tcccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggagac 241 |||||||||||||||||||||||| ||||| || | ||||||||| |||||||||||||| Sbjct: 918 tcccaagcttcttgctttcttgaacgcctcgttggaagcagctgccactggcatggagac 859 Query: 242 ggcattttcatctcccaatgacagagccagcctcatatccttctgctgatgtttgagggg 301 || || || ||||| | | || |||| |||||||||||||||||| ||||| ||||| Sbjct: 858 agcgttctcgtctcctagggcaagtgccaacctcatatccttctgctggtgtttcagggg 799 Query: 302 aaatgctggattgtagctgccctgtagcatcgaaggccctttcatcttgaacatcggatt 361 |||||| || ||||||||||| || |||||||| |||||||||| ||||||||| ||||| Sbjct: 798 aaatgcagggttgtagctgccttgcagcatcgagggccctttcagcttgaacattggatt 739 Query: 362 tgcgatggcaccgagatccaggacatcaagaagcgtctgggggctcaacccacttttgtc 421 |||||||| || || ||||||||||||||||| |||||||||||||| ||||| || || Sbjct: 738 cgcgatggcgccaaggtccaggacatcaagaagtgtctgggggctcaaaccactgttatc 679 Query: 422 agccaaacagagtccctcggagaaagcattcatcatacttcccatgatcatgttgaccac 481 ||||| | |||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct: 678 agccagagagagtccctcagacaaagcattcatcatacttcccatgatcatgttgaccac 619 Query: 482 cagtttcatctttgctccatttcccatctcccccagaaagaacgacttcttcccaagtat 541 |||||||||||||||||||||||| ||||| |||| |||||||||||| |||||||||| Sbjct: 618 cagtttcatctttgctccatttccaatctctcccaaaaagaacgactttttcccaagtac 559 Query: 542 gtcaaatgcagggaccatgtcatcatatagtgccttgtcgcctgcagcaagaatg 596 ||||||||||||||||| |||||||| | | ||||||| ||||||||||||||| Sbjct: 558 atcaaatgcagggaccatatcatcatacaataccttgtcccctgcagcaagaatg 504
>ref|XM_506829.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1712_E04.5 mRNA Length = 1267 Score = 482 bits (243), Expect = e-133 Identities = 417/475 (87%) Strand = Plus / Minus Query: 122 gcctgaaccacctgtgcctttcagcacctcgtgcaccgcagaaaaatccaggtcgccaag 181 |||||| ||||||| ||| ||||| ||||||| ||||| || ||||||||||| || || Sbjct: 1007 gcctgagccacctgcgcccttcagtacctcgtaaaccgctgagaaatccaggtcccctag 948 Query: 182 tcccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggagac 241 |||||||||||||||||||||||| ||||| || | ||||||||| |||||||||||||| Sbjct: 947 tcccaagcttcttgctttcttgaacgcctcgttggaagcagctgccactggcatggagac 888 Query: 242 ggcattttcatctcccaatgacagagccagcctcatatccttctgctgatgtttgagggg 301 || || || ||||| | | || |||| |||||||||||||||||| ||||| ||||| Sbjct: 887 agcgttctcgtctcctagggcaagtgccaacctcatatccttctgctggtgtttcagggg 828 Query: 302 aaatgctggattgtagctgccctgtagcatcgaaggccctttcatcttgaacatcggatt 361 |||||| || ||||||||||| || |||||||| |||||||||| ||||||||| ||||| Sbjct: 827 aaatgcagggttgtagctgccttgcagcatcgagggccctttcagcttgaacattggatt 768 Query: 362 tgcgatggcaccgagatccaggacatcaagaagcgtctgggggctcaacccacttttgtc 421 |||||||| || || ||||||||||||||||| |||||||||||||| ||||| || || Sbjct: 767 cgcgatggcgccaaggtccaggacatcaagaagtgtctgggggctcaaaccactgttatc 708 Query: 422 agccaaacagagtccctcggagaaagcattcatcatacttcccatgatcatgttgaccac 481 ||||| | |||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct: 707 agccagagagagtccctcagacaaagcattcatcatacttcccatgatcatgttgaccac 648 Query: 482 cagtttcatctttgctccatttcccatctcccccagaaagaacgacttcttcccaagtat 541 |||||||||||||||||||||||| ||||| |||| |||||||||||| |||||||||| Sbjct: 647 cagtttcatctttgctccatttccaatctctcccaaaaagaacgactttttcccaagtac 588 Query: 542 gtcaaatgcagggaccatgtcatcatatagtgccttgtcgcctgcagcaagaatg 596 ||||||||||||||||| |||||||| | | ||||||| ||||||||||||||| Sbjct: 587 atcaaatgcagggaccatatcatcatacaataccttgtcccctgcagcaagaatg 533
>gb|AY224558.1| Oryza sativa (japonica cultivar-group) isolate 29037 gamma hydroxybutyrate dehydrogenase-like protein mRNA, complete cds Length = 882 Score = 482 bits (243), Expect = e-133 Identities = 417/475 (87%) Strand = Plus / Minus Query: 122 gcctgaaccacctgtgcctttcagcacctcgtgcaccgcagaaaaatccaggtcgccaag 181 |||||| ||||||| ||| ||||| ||||||| ||||| || ||||||||||| || || Sbjct: 873 gcctgagccacctgcgcccttcagtacctcgtaaaccgctgagaaatccaggtcccctag 814 Query: 182 tcccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggagac 241 |||||||||||||||||||||||| ||||| || | ||||||||| |||||||||||||| Sbjct: 813 tcccaagcttcttgctttcttgaacgcctcgttggaagcagctgccactggcatggagac 754 Query: 242 ggcattttcatctcccaatgacagagccagcctcatatccttctgctgatgtttgagggg 301 || || || ||||| | | || |||| |||||||||||||||||| ||||| ||||| Sbjct: 753 agcgttctcgtctcctagggcaagtgccaacctcatatccttctgctggtgtttcagggg 694 Query: 302 aaatgctggattgtagctgccctgtagcatcgaaggccctttcatcttgaacatcggatt 361 |||||| || ||||||||||| || |||||||| |||||||||| ||||||||| ||||| Sbjct: 693 aaatgcagggttgtagctgccttgcagcatcgagggccctttcagcttgaacattggatt 634 Query: 362 tgcgatggcaccgagatccaggacatcaagaagcgtctgggggctcaacccacttttgtc 421 |||||||| || || ||||||||||||||||| |||||||||||||| ||||| || || Sbjct: 633 cgcgatggcgccaaggtccaggacatcaagaagtgtctgggggctcaaaccactgttatc 574 Query: 422 agccaaacagagtccctcggagaaagcattcatcatacttcccatgatcatgttgaccac 481 ||||| | |||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct: 573 agccagagagagtccctcagacaaagcattcatcatacttcccatgatcatgttgaccac 514 Query: 482 cagtttcatctttgctccatttcccatctcccccagaaagaacgacttcttcccaagtat 541 |||||||||||||||||||||||| ||||| |||| |||||||||||| |||||||||| Sbjct: 513 cagtttcatctttgctccatttccaatctctcccaaaaagaacgactttttcccaagtac 454 Query: 542 gtcaaatgcagggaccatgtcatcatatagtgccttgtcgcctgcagcaagaatg 596 ||||||||||||||||| |||||||| | | ||||||| ||||||||||||||| Sbjct: 453 atcaaatgcagggaccatatcatcatacaataccttgtcccctgcagcaagaatg 399
>dbj|AB110167.1| Oryza sativa (japonica cultivar-group) mRNA for hypothetical protein, complete cds, clone: 12FPR024 Length = 1163 Score = 482 bits (243), Expect = e-133 Identities = 417/475 (87%) Strand = Plus / Minus Query: 122 gcctgaaccacctgtgcctttcagcacctcgtgcaccgcagaaaaatccaggtcgccaag 181 |||||| ||||||| ||| ||||| ||||||| ||||| || ||||||||||| || || Sbjct: 956 gcctgagccacctgcgcccttcagtacctcgtaaaccgctgagaaatccaggtcccctag 897 Query: 182 tcccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggagac 241 |||||||||||||||||||||||| ||||| || | ||||||||| |||||||||||||| Sbjct: 896 tcccaagcttcttgctttcttgaacgcctcgttggaagcagctgccactggcatggagac 837 Query: 242 ggcattttcatctcccaatgacagagccagcctcatatccttctgctgatgtttgagggg 301 || || || ||||| | | || |||| |||||||||||||||||| ||||| ||||| Sbjct: 836 agcgttctcgtctcctagggcaagtgccaacctcatatccttctgctggtgtttcagggg 777 Query: 302 aaatgctggattgtagctgccctgtagcatcgaaggccctttcatcttgaacatcggatt 361 |||||| || ||||||||||| || |||||||| |||||||||| ||||||||| ||||| Sbjct: 776 aaatgcagggttgtagctgccttgcagcatcgagggccctttcagcttgaacattggatt 717 Query: 362 tgcgatggcaccgagatccaggacatcaagaagcgtctgggggctcaacccacttttgtc 421 |||||||| || || ||||||||||||||||| |||||||||||||| ||||| || || Sbjct: 716 cgcgatggcgccaaggtccaggacatcaagaagtgtctgggggctcaaaccactgttatc 657 Query: 422 agccaaacagagtccctcggagaaagcattcatcatacttcccatgatcatgttgaccac 481 ||||| | |||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct: 656 agccagagagagtccctcagacaaagcattcatcatacttcccatgatcatgttgaccac 597 Query: 482 cagtttcatctttgctccatttcccatctcccccagaaagaacgacttcttcccaagtat 541 |||||||||||||||||||||||| ||||| |||| |||||||||||| |||||||||| Sbjct: 596 cagtttcatctttgctccatttccaatctctcccaaaaagaacgactttttcccaagtac 537 Query: 542 gtcaaatgcagggaccatgtcatcatatagtgccttgtcgcctgcagcaagaatg 596 ||||||||||||||||| |||||||| | | ||||||| ||||||||||||||| Sbjct: 536 atcaaatgcagggaccatatcatcatacaataccttgtcccctgcagcaagaatg 482
>dbj|AK109435.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-H04, full insert sequence Length = 1220 Score = 482 bits (243), Expect = e-133 Identities = 417/475 (87%) Strand = Plus / Minus Query: 122 gcctgaaccacctgtgcctttcagcacctcgtgcaccgcagaaaaatccaggtcgccaag 181 |||||| ||||||| ||| ||||| ||||||| ||||| || ||||||||||| || || Sbjct: 1004 gcctgagccacctgcgcccttcagtacctcgtaaaccgctgagaaatccaggtcccctag 945 Query: 182 tcccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggagac 241 |||||||||||||||||||||||| ||||| || | ||||||||| |||||||||||||| Sbjct: 944 tcccaagcttcttgctttcttgaacgcctcgttggaagcagctgccactggcatggagac 885 Query: 242 ggcattttcatctcccaatgacagagccagcctcatatccttctgctgatgtttgagggg 301 || || || ||||| | | || |||| |||||||||||||||||| ||||| ||||| Sbjct: 884 agcgttctcgtctcctagggcaagtgccaacctcatatccttctgctggtgtttcagggg 825 Query: 302 aaatgctggattgtagctgccctgtagcatcgaaggccctttcatcttgaacatcggatt 361 |||||| || ||||||||||| || |||||||| |||||||||| ||||||||| ||||| Sbjct: 824 aaatgcagggttgtagctgccttgcagcatcgagggccctttcagcttgaacattggatt 765 Query: 362 tgcgatggcaccgagatccaggacatcaagaagcgtctgggggctcaacccacttttgtc 421 |||||||| || || ||||||||||||||||| |||||||||||||| ||||| || || Sbjct: 764 cgcgatggcgccaaggtccaggacatcaagaagtgtctgggggctcaaaccactgttatc 705 Query: 422 agccaaacagagtccctcggagaaagcattcatcatacttcccatgatcatgttgaccac 481 ||||| | |||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct: 704 agccagagagagtccctcagacaaagcattcatcatacttcccatgatcatgttgaccac 645 Query: 482 cagtttcatctttgctccatttcccatctcccccagaaagaacgacttcttcccaagtat 541 |||||||||||||||||||||||| ||||| |||| |||||||||||| |||||||||| Sbjct: 644 cagtttcatctttgctccatttccaatctctcccaaaaagaacgactttttcccaagtac 585 Query: 542 gtcaaatgcagggaccatgtcatcatatagtgccttgtcgcctgcagcaagaatg 596 ||||||||||||||||| |||||||| | | ||||||| ||||||||||||||| Sbjct: 584 atcaaatgcagggaccatatcatcatacaataccttgtcccctgcagcaagaatg 530
>dbj|AK104168.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-E09, full insert sequence Length = 1187 Score = 482 bits (243), Expect = e-133 Identities = 417/475 (87%) Strand = Plus / Minus Query: 122 gcctgaaccacctgtgcctttcagcacctcgtgcaccgcagaaaaatccaggtcgccaag 181 |||||| ||||||| ||| ||||| ||||||| ||||| || ||||||||||| || || Sbjct: 975 gcctgagccacctgcgcccttcagtacctcgtaaaccgctgagaaatccaggtcccctag 916 Query: 182 tcccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggagac 241 |||||||||||||||||||||||| ||||| || | ||||||||| |||||||||||||| Sbjct: 915 tcccaagcttcttgctttcttgaacgcctcgttggaagcagctgccactggcatggagac 856 Query: 242 ggcattttcatctcccaatgacagagccagcctcatatccttctgctgatgtttgagggg 301 || || || ||||| | | || |||| |||||||||||||||||| ||||| ||||| Sbjct: 855 agcgttctcgtctcctagggcaagtgccaacctcatatccttctgctggtgtttcagggg 796 Query: 302 aaatgctggattgtagctgccctgtagcatcgaaggccctttcatcttgaacatcggatt 361 |||||| || ||||||||||| || |||||||| |||||||||| ||||||||| ||||| Sbjct: 795 aaatgcagggttgtagctgccttgcagcatcgagggccctttcagcttgaacattggatt 736 Query: 362 tgcgatggcaccgagatccaggacatcaagaagcgtctgggggctcaacccacttttgtc 421 |||||||| || || ||||||||||||||||| |||||||||||||| ||||| || || Sbjct: 735 cgcgatggcgccaaggtccaggacatcaagaagtgtctgggggctcaaaccactgttatc 676 Query: 422 agccaaacagagtccctcggagaaagcattcatcatacttcccatgatcatgttgaccac 481 ||||| | |||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct: 675 agccagagagagtccctcagacaaagcattcatcatacttcccatgatcatgttgaccac 616 Query: 482 cagtttcatctttgctccatttcccatctcccccagaaagaacgacttcttcccaagtat 541 |||||||||||||||||||||||| ||||| |||| |||||||||||| |||||||||| Sbjct: 615 cagtttcatctttgctccatttccaatctctcccaaaaagaacgactttttcccaagtac 556 Query: 542 gtcaaatgcagggaccatgtcatcatatagtgccttgtcgcctgcagcaagaatg 596 ||||||||||||||||| |||||||| | | ||||||| ||||||||||||||| Sbjct: 555 atcaaatgcagggaccatatcatcatacaataccttgtcccctgcagcaagaatg 501
>dbj|AK071800.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114G06, full insert sequence Length = 1235 Score = 482 bits (243), Expect = e-133 Identities = 417/475 (87%) Strand = Plus / Minus Query: 122 gcctgaaccacctgtgcctttcagcacctcgtgcaccgcagaaaaatccaggtcgccaag 181 |||||| ||||||| ||| ||||| ||||||| ||||| || ||||||||||| || || Sbjct: 978 gcctgagccacctgcgcccttcagtacctcgtaaaccgctgagaaatccaggtcccctag 919 Query: 182 tcccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggagac 241 |||||||||||||||||||||||| ||||| || | ||||||||| |||||||||||||| Sbjct: 918 tcccaagcttcttgctttcttgaacgcctcgttggaagcagctgccactggcatggagac 859 Query: 242 ggcattttcatctcccaatgacagagccagcctcatatccttctgctgatgtttgagggg 301 || || || ||||| | | || |||| |||||||||||||||||| ||||| ||||| Sbjct: 858 agcgttctcgtctcctagggcaagtgccaacctcatatccttctgctggtgtttcagggg 799 Query: 302 aaatgctggattgtagctgccctgtagcatcgaaggccctttcatcttgaacatcggatt 361 |||||| || ||||||||||| || |||||||| |||||||||| ||||||||| ||||| Sbjct: 798 aaatgcagggttgtagctgccttgcagcatcgagggccctttcagcttgaacattggatt 739 Query: 362 tgcgatggcaccgagatccaggacatcaagaagcgtctgggggctcaacccacttttgtc 421 |||||||| || || ||||||||||||||||| |||||||||||||| ||||| || || Sbjct: 738 cgcgatggcgccaaggtccaggacatcaagaagtgtctgggggctcaaaccactgttatc 679 Query: 422 agccaaacagagtccctcggagaaagcattcatcatacttcccatgatcatgttgaccac 481 ||||| | |||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct: 678 agccagagagagtccctcagacaaagcattcatcatacttcccatgatcatgttgaccac 619 Query: 482 cagtttcatctttgctccatttcccatctcccccagaaagaacgacttcttcccaagtat 541 |||||||||||||||||||||||| ||||| |||| |||||||||||| |||||||||| Sbjct: 618 cagtttcatctttgctccatttccaatctctcccaaaaagaacgactttttcccaagtac 559 Query: 542 gtcaaatgcagggaccatgtcatcatatagtgccttgtcgcctgcagcaagaatg 596 ||||||||||||||||| |||||||| | | ||||||| ||||||||||||||| Sbjct: 558 atcaaatgcagggaccatatcatcatacaataccttgtcccctgcagcaagaatg 504
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 163 bits (82), Expect = 8e-37 Identities = 103/110 (93%) Strand = Plus / Minus Query: 459 cttcccatgatcatgttgaccaccagtttcatctttgctccatttcccatctcccccaga 518 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| | Sbjct: 21367016 cttcccatgatcatgttgaccaccagtttcatctttgctccatttccaatctctcccaaa 21366957 Query: 519 aagaacgacttcttcccaagtatgtcaaatgcagggaccatgtcatcata 568 ||||||||||| |||||||||| ||||||||||||||||| |||||||| Sbjct: 21366956 aagaacgactttttcccaagtacatcaaatgcagggaccatatcatcata 21366907 Score = 129 bits (65), Expect = 1e-26 Identities = 131/153 (85%) Strand = Plus / Minus Query: 218 agcagctgcgactggcatggagacggcattttcatctcccaatgacagagccagcctcat 277 ||||||||| |||||||||||||| || || || ||||| | | || |||| |||||| Sbjct: 21367508 agcagctgccactggcatggagacagcgttctcgtctcctagggcaagtgccaacctcat 21367449 Query: 278 atccttctgctgatgtttgaggggaaatgctggattgtagctgccctgtagcatcgaagg 337 |||||||||||| ||||| ||||||||||| || ||||||||||| || |||||||| || Sbjct: 21367448 atccttctgctggtgtttcaggggaaatgcagggttgtagctgccttgcagcatcgaggg 21367389 Query: 338 ccctttcatcttgaacatcggatttgcgatggc 370 |||||||| ||||||||| ||||| |||||||| Sbjct: 21367388 ccctttcagcttgaacattggattcgcgatggc 21367356 Score = 99.6 bits (50), Expect = 1e-17 Identities = 74/82 (90%) Strand = Plus / Minus Query: 379 ccaggacatcaagaagcgtctgggggctcaacccacttttgtcagccaaacagagtccct 438 |||||||||||||||| |||||||||||||| ||||| || ||||||| | ||||||||| Sbjct: 21367259 ccaggacatcaagaagtgtctgggggctcaaaccactgttatcagccagagagagtccct 21367200 Query: 439 cggagaaagcattcatcatact 460 | || ||||||||||||||||| Sbjct: 21367199 cagacaaagcattcatcatact 21367178 Score = 89.7 bits (45), Expect = 1e-14 Identities = 78/89 (87%) Strand = Plus / Minus Query: 122 gcctgaaccacctgtgcctttcagcacctcgtgcaccgcagaaaaatccaggtcgccaag 181 |||||| ||||||| ||| ||||| ||||||| ||||| || ||||||||||| || || Sbjct: 21367703 gcctgagccacctgcgcccttcagtacctcgtaaaccgctgagaaatccaggtcccctag 21367644 Query: 182 tcccaagcttcttgctttcttgaatgcct 210 |||||||||||||||||||||||| |||| Sbjct: 21367643 tcccaagcttcttgctttcttgaacgcct 21367615
>dbj|AP004144.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1712_E04 Length = 110098 Score = 163 bits (82), Expect = 8e-37 Identities = 103/110 (93%) Strand = Plus / Minus Query: 459 cttcccatgatcatgttgaccaccagtttcatctttgctccatttcccatctcccccaga 518 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| | Sbjct: 26969 cttcccatgatcatgttgaccaccagtttcatctttgctccatttccaatctctcccaaa 26910 Query: 519 aagaacgacttcttcccaagtatgtcaaatgcagggaccatgtcatcata 568 ||||||||||| |||||||||| ||||||||||||||||| |||||||| Sbjct: 26909 aagaacgactttttcccaagtacatcaaatgcagggaccatatcatcata 26860 Score = 129 bits (65), Expect = 1e-26 Identities = 131/153 (85%) Strand = Plus / Minus Query: 218 agcagctgcgactggcatggagacggcattttcatctcccaatgacagagccagcctcat 277 ||||||||| |||||||||||||| || || || ||||| | | || |||| |||||| Sbjct: 27461 agcagctgccactggcatggagacagcgttctcgtctcctagggcaagtgccaacctcat 27402 Query: 278 atccttctgctgatgtttgaggggaaatgctggattgtagctgccctgtagcatcgaagg 337 |||||||||||| ||||| ||||||||||| || ||||||||||| || |||||||| || Sbjct: 27401 atccttctgctggtgtttcaggggaaatgcagggttgtagctgccttgcagcatcgaggg 27342 Query: 338 ccctttcatcttgaacatcggatttgcgatggc 370 |||||||| ||||||||| ||||| |||||||| Sbjct: 27341 ccctttcagcttgaacattggattcgcgatggc 27309 Score = 99.6 bits (50), Expect = 1e-17 Identities = 74/82 (90%) Strand = Plus / Minus Query: 379 ccaggacatcaagaagcgtctgggggctcaacccacttttgtcagccaaacagagtccct 438 |||||||||||||||| |||||||||||||| ||||| || ||||||| | ||||||||| Sbjct: 27212 ccaggacatcaagaagtgtctgggggctcaaaccactgttatcagccagagagagtccct 27153 Query: 439 cggagaaagcattcatcatact 460 | || ||||||||||||||||| Sbjct: 27152 cagacaaagcattcatcatact 27131 Score = 89.7 bits (45), Expect = 1e-14 Identities = 78/89 (87%) Strand = Plus / Minus Query: 122 gcctgaaccacctgtgcctttcagcacctcgtgcaccgcagaaaaatccaggtcgccaag 181 |||||| ||||||| ||| ||||| ||||||| ||||| || ||||||||||| || || Sbjct: 27656 gcctgagccacctgcgcccttcagtacctcgtaaaccgctgagaaatccaggtcccctag 27597 Query: 182 tcccaagcttcttgctttcttgaatgcct 210 |||||||||||||||||||||||| |||| Sbjct: 27596 tcccaagcttcttgctttcttgaacgcct 27568
>gb|BT012834.1| Lycopersicon esculentum clone 113891R, mRNA sequence Length = 1105 Score = 145 bits (73), Expect = 2e-31 Identities = 261/321 (81%), Gaps = 2/321 (0%) Strand = Plus / Minus Query: 183 cccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggagacg 242 |||||||| ||||| ||||||||||||||||| ||||||||||| |||||||| | || Sbjct: 845 cccaagctccttgccttcttgaatgcctcatttgcagcagctgcaactggcattggcact 786 Query: 243 gcattttcatctcccaatgacagagccagcctcatatccttctgctgatgtttgagggga 302 ||||| |||||||| | || |||||||||||||| ||||||||||||||||| | ||| Sbjct: 785 gcattctcatctccgagtgcaagagccagcctcatgtccttctgctgatgtttcaaagga 726 Query: 303 aatgctggattgtagctgccctgtagcatcgaaggccctttcatcttgaacatcggattt 362 ||||| || |||||| | || ||| | ||| |||||||| |||||||| || || Sbjct: 725 aatgcgggtgggtagctattttttatcatggcaggtcctttcattttgaacatggggtta 666 Query: 363 gcgatggcaccgagatccaggacatcaagaagcgtctgggggctcaacccacttttgtca 422 || ||||| || ||||||| ||||| |||||||| || ||| ||| |||||||||||| Sbjct: 665 gcaatggctccaagatccaacacatcgagaagcgtatgagggtccaatccacttttgtca 606 Query: 423 gcca-aacagagtccctcggagaaagcattcatcatacttcccatgatcatgttgaccac 481 |||| ||| | ||| || || || |||||||||||||| ||||| ||||| || || || Sbjct: 605 gccagtaca-attccttctgaaaacgcattcatcatactgcccattatcatattaacaac 547 Query: 482 cagtttcatctttgctccatt 502 |||||||| ||||||||||| Sbjct: 546 aagtttcatttttgctccatt 526
>ref|NM_001035688.1| Arabidopsis thaliana 3-hydroxyisobutyrate dehydrogenase/ phosphogluconate dehydrogenase (decarboxylating) AT3G25530 transcript variant AT3G25530.2 mRNA, complete cds Length = 1065 Score = 61.9 bits (31), Expect = 2e-06 Identities = 106/131 (80%) Strand = Plus / Minus Query: 180 agtcccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggag 239 |||||||||||||| || ||||| || ||||| || ||||| || || || |||||||| Sbjct: 861 agtcccaagcttctcgccttcttaaaagcctcgtttgcagccgcggctacaggcatggaa 802 Query: 240 acggcattttcatctcccaatgacagagccagcctcatatccttctgctgatgtttgagg 299 || || |||||||| || | | ||||| |||||||| || |||||||||||||| | Sbjct: 801 accgcgttttcatcgccaagagcaagagctagcctcatgtctttctgctgatgtttcaat 742 Query: 300 ggaaatgctgg 310 ||||||||||| Sbjct: 741 ggaaatgctgg 731 Score = 52.0 bits (26), Expect = 0.002 Identities = 58/66 (87%), Gaps = 2/66 (3%) Strand = Plus / Minus Query: 411 ccacttttgtcagccaa-acagagtccctcggagaaagcattcatcatacttcccatgat 469 ||||| ||||||||||| ||| || ||||| ||||| ||||||||||| |||||||| || Sbjct: 630 ccactcttgtcagccaataca-agcccctcagagaatgcattcatcatgcttcccattat 572 Query: 470 catgtt 475 |||||| Sbjct: 571 catgtt 566
>ref|NM_113449.2| Arabidopsis thaliana 3-hydroxyisobutyrate dehydrogenase/ phosphogluconate dehydrogenase (decarboxylating) AT3G25530 transcript variant AT3G25530.1 mRNA, complete cds Length = 1099 Score = 61.9 bits (31), Expect = 2e-06 Identities = 106/131 (80%) Strand = Plus / Minus Query: 180 agtcccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggag 239 |||||||||||||| || ||||| || ||||| || ||||| || || || |||||||| Sbjct: 895 agtcccaagcttctcgccttcttaaaagcctcgtttgcagccgcggctacaggcatggaa 836 Query: 240 acggcattttcatctcccaatgacagagccagcctcatatccttctgctgatgtttgagg 299 || || |||||||| || | | ||||| |||||||| || |||||||||||||| | Sbjct: 835 accgcgttttcatcgccaagagcaagagctagcctcatgtctttctgctgatgtttcaat 776 Query: 300 ggaaatgctgg 310 ||||||||||| Sbjct: 775 ggaaatgctgg 765 Score = 52.0 bits (26), Expect = 0.002 Identities = 58/66 (87%), Gaps = 2/66 (3%) Strand = Plus / Minus Query: 411 ccacttttgtcagccaa-acagagtccctcggagaaagcattcatcatacttcccatgat 469 ||||| ||||||||||| ||| || ||||| ||||| ||||||||||| |||||||| || Sbjct: 664 ccactcttgtcagccaataca-agcccctcagagaatgcattcatcatgcttcccattat 606 Query: 470 catgtt 475 |||||| Sbjct: 605 catgtt 600
>ref|NM_101628.3| Arabidopsis thaliana phosphogluconate dehydrogenase (decarboxylating) AT1G17650 mRNA, complete cds Length = 1242 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 452 catcatacttcccatgatcatgttgaccaccagtttcat 490 ||||||||||||||||||||||||||| || |||||||| Sbjct: 789 catcatacttcccatgatcatgttgacgacaagtttcat 751 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 ctcatatccttctgctgatg 292 |||||||||||||||||||| Sbjct: 968 ctcatatccttctgctgatg 949
>gb|AY044183.1| Arabidopsis thaliana gamma hydroxybutyrate dehydrogenase mRNA, complete cds Length = 1032 Score = 61.9 bits (31), Expect = 2e-06 Identities = 106/131 (80%) Strand = Plus / Minus Query: 180 agtcccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggag 239 |||||||||||||| || ||||| || ||||| || ||||| || || || |||||||| Sbjct: 815 agtcccaagcttctcgccttcttaaaagcctcgtttgcagccgcggctacaggcatggaa 756 Query: 240 acggcattttcatctcccaatgacagagccagcctcatatccttctgctgatgtttgagg 299 || || |||||||| || | | ||||| |||||||| || |||||||||||||| | Sbjct: 755 accgcgttttcatcgccaagagcaagagctagcctcatgtctttctgctgatgtttcaat 696 Query: 300 ggaaatgctgg 310 ||||||||||| Sbjct: 695 ggaaatgctgg 685 Score = 52.0 bits (26), Expect = 0.002 Identities = 58/66 (87%), Gaps = 2/66 (3%) Strand = Plus / Minus Query: 411 ccacttttgtcagccaa-acagagtccctcggagaaagcattcatcatacttcccatgat 469 ||||| ||||||||||| ||| || ||||| ||||| ||||||||||| |||||||| || Sbjct: 584 ccactcttgtcagccaataca-agcccctcagagaatgcattcatcatgcttcccattat 526 Query: 470 catgtt 475 |||||| Sbjct: 525 catgtt 520
>gb|BT025039.1| Arabidopsis thaliana At3g25530 mRNA, complete cds Length = 870 Score = 61.9 bits (31), Expect = 2e-06 Identities = 106/131 (80%) Strand = Plus / Minus Query: 180 agtcccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggag 239 |||||||||||||| || ||||| || ||||| || ||||| || || || |||||||| Sbjct: 815 agtcccaagcttctcgccttcttaaaagcctcgtttgcagccgcggctacaggcatggaa 756 Query: 240 acggcattttcatctcccaatgacagagccagcctcatatccttctgctgatgtttgagg 299 || || |||||||| || | | ||||| |||||||| || |||||||||||||| | Sbjct: 755 accgcgttttcatcgccaagagcaagagctagcctcatgtctttctgctgatgtttcaat 696 Query: 300 ggaaatgctgg 310 ||||||||||| Sbjct: 695 ggaaatgctgg 685 Score = 52.0 bits (26), Expect = 0.002 Identities = 58/66 (87%), Gaps = 2/66 (3%) Strand = Plus / Minus Query: 411 ccacttttgtcagccaa-acagagtccctcggagaaagcattcatcatacttcccatgat 469 ||||| ||||||||||| ||| || ||||| ||||| ||||||||||| |||||||| || Sbjct: 584 ccactcttgtcagccaataca-agcccctcagagaatgcattcatcatgcttcccattat 526 Query: 470 catgtt 475 |||||| Sbjct: 525 catgtt 520
>gb|BT008734.1| Arabidopsis thaliana At1g17650 gene, complete cds Length = 1032 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 452 catcatacttcccatgatcatgttgaccaccagtttcat 490 ||||||||||||||||||||||||||| || |||||||| Sbjct: 696 catcatacttcccatgatcatgttgacgacaagtttcat 658 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 ctcatatccttctgctgatg 292 |||||||||||||||||||| Sbjct: 875 ctcatatccttctgctgatg 856
>gb|AY093135.1| Arabidopsis thaliana unknown protein (At1g17650) mRNA, complete cds Length = 1164 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 452 catcatacttcccatgatcatgttgaccaccagtttcat 490 ||||||||||||||||||||||||||| || |||||||| Sbjct: 712 catcatacttcccatgatcatgttgacgacaagtttcat 674 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 ctcatatccttctgctgatg 292 |||||||||||||||||||| Sbjct: 891 ctcatatccttctgctgatg 872
>gb|AY049298.1| Arabidopsis thaliana AT3g25530/MWL2_15 mRNA, complete cds Length = 1081 Score = 61.9 bits (31), Expect = 2e-06 Identities = 106/131 (80%) Strand = Plus / Minus Query: 180 agtcccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggag 239 |||||||||||||| || ||||| || ||||| || ||||| || || || |||||||| Sbjct: 895 agtcccaagcttctcgccttcttaaaagcctcgtttgcagccgcggctacaggcatggaa 836 Query: 240 acggcattttcatctcccaatgacagagccagcctcatatccttctgctgatgtttgagg 299 || || |||||||| || | | ||||| |||||||| || |||||||||||||| | Sbjct: 835 accgcgttttcatcgccaagagcaagagctagcctcatgtctttctgctgatgtttcaat 776 Query: 300 ggaaatgctgg 310 ||||||||||| Sbjct: 775 ggaaatgctgg 765 Score = 52.0 bits (26), Expect = 0.002 Identities = 58/66 (87%), Gaps = 2/66 (3%) Strand = Plus / Minus Query: 411 ccacttttgtcagccaa-acagagtccctcggagaaagcattcatcatacttcccatgat 469 ||||| ||||||||||| ||| || ||||| ||||| ||||||||||| |||||||| || Sbjct: 663 ccactcttgtcagccaataca-agcccctcagagaatgcattcatcatgcttcccattat 605 Query: 470 catgtt 475 |||||| Sbjct: 604 catgtt 599
>gb|AY085690.1| Arabidopsis thaliana clone 17110 mRNA, complete sequence Length = 1156 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 452 catcatacttcccatgatcatgttgaccaccagtttcat 490 ||||||||||||||||||||||||||| || |||||||| Sbjct: 727 catcatacttcccatgatcatgttgacgacaagtttcat 689 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 ctcatatccttctgctgatg 292 |||||||||||||||||||| Sbjct: 906 ctcatatccttctgctgatg 887
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 462 cccatgatcatgttgaccaccagtttcatc 491 ||||||||||||||||||||||| |||||| Sbjct: 1500967 cccatgatcatgttgaccaccagcttcatc 1500996
>emb|BX825117.1|CNS0A67I Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL11ZB03 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1065 Score = 52.0 bits (26), Expect = 0.002 Identities = 58/66 (87%), Gaps = 2/66 (3%) Strand = Plus / Minus Query: 411 ccacttttgtcagccaa-acagagtccctcggagaaagcattcatcatacttcccatgat 469 ||||| ||||||||||| ||| || ||||| ||||| ||||||||||| |||||||| || Sbjct: 642 ccactcttgtcagccaataca-agcccctcagagaatgcattcatcatgcttcccattat 584 Query: 470 catgtt 475 |||||| Sbjct: 583 catgtt 578
>gb|AC148918.3| Medicago truncatula chromosome 2 BAC clone mth2-44o11, complete sequence Length = 126437 Score = 48.1 bits (24), Expect = 0.033 Identities = 27/28 (96%) Strand = Plus / Plus Query: 280 ccttctgctgatgtttgaggggaaatgc 307 |||||||||||||||| ||||||||||| Sbjct: 79217 ccttctgctgatgttttaggggaaatgc 79244
>gb|AC034257.3|AC034257 Arabidopsis thaliana chromosome I BAC F11A6 genomic sequence, complete sequence Length = 98950 Score = 48.1 bits (24), Expect = 0.033 Identities = 30/32 (93%) Strand = Plus / Plus Query: 459 cttcccatgatcatgttgaccaccagtttcat 490 |||||||||||||||||||| || |||||||| Sbjct: 49946 cttcccatgatcatgttgacgacaagtttcat 49977
>gb|AC022492.5|AC022492 Genomic sequence for Arabidopsis thaliana BAC F1L3 from chromosome I, complete sequence Length = 127968 Score = 48.1 bits (24), Expect = 0.033 Identities = 30/32 (93%) Strand = Plus / Plus Query: 459 cttcccatgatcatgttgaccaccagtttcat 490 |||||||||||||||||||| || |||||||| Sbjct: 123935 cttcccatgatcatgttgacgacaagtttcat 123966
>ref|XM_776747.1| PREDICTED: Strongylocentrotus purpuratus similar to cytokine-like nuclear factor n-pac (LOC576439), mRNA Length = 453 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 465 atgatcatgttgaccaccagtttcatc 491 ||||||||||||| ||||||||||||| Sbjct: 122 atgatcatgttgatcaccagtttcatc 96
>gb|AC156448.2| Volvox carteri clone JGIAOBO-33O24, complete sequence Length = 38975 Score = 46.1 bits (23), Expect = 0.13 Identities = 44/51 (86%) Strand = Plus / Minus Query: 267 gccagcctcatatccttctgctgatgtttgaggggaaatgctggattgtag 317 ||||||| ||||||||||||||| || ||||| || ||||| || |||||| Sbjct: 22730 gccagccgcatatccttctgctggtgcttgagcgggaatgcggggttgtag 22680
>dbj|AB025639.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MWL2 Length = 84896 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Plus Query: 264 agagccagcctcatatccttctgctgatgtttgaggggaaatgctgg 310 ||||| |||||||| || |||||||||||||| | ||||||||||| Sbjct: 58963 agagctagcctcatgtctttctgctgatgtttcaatggaaatgctgg 59009
>gb|AC145967.3| Pan troglodytes BAC clone RP43-17M21 from 7, complete sequence Length = 179148 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 487 tcatctttgctccatttccca 507 ||||||||||||||||||||| Sbjct: 33281 tcatctttgctccatttccca 33261
>gb|AC147100.2| Pan troglodytes BAC clone RP43-45I10 from 7, complete sequence Length = 150235 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 487 tcatctttgctccatttccca 507 ||||||||||||||||||||| Sbjct: 143849 tcatctttgctccatttccca 143869
>gb|AC146375.3| Pan troglodytes BAC clone RP43-75I2 from 7, complete sequence Length = 205242 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 487 tcatctttgctccatttccca 507 ||||||||||||||||||||| Sbjct: 191463 tcatctttgctccatttccca 191483
>gb|AC113506.12| Mus musculus chromosome 9, clone RP23-373O2, complete sequence Length = 171170 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 490 tctttgctccatttcccatct 510 ||||||||||||||||||||| Sbjct: 162947 tctttgctccatttcccatct 162967
>gb|AC102627.8| Mus musculus chromosome 14, clone RP23-466M3, complete sequence Length = 193228 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 526 acttcttcccaagtatgtcaa 546 ||||||||||||||||||||| Sbjct: 162435 acttcttcccaagtatgtcaa 162455
>gb|AC002385.1| Homo sapiens BAC clone CTA-222A16 from 7, complete sequence Length = 201990 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 487 tcatctttgctccatttccca 507 ||||||||||||||||||||| Sbjct: 138618 tcatctttgctccatttccca 138638
>gb|AC146114.3| Pan troglodytes BAC clone RP43-22O2 from 7, complete sequence Length = 176328 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 487 tcatctttgctccatttccca 507 ||||||||||||||||||||| Sbjct: 128987 tcatctttgctccatttccca 128967
>gb|AC090132.3| Homo sapiens chromosome 8, clone RP11-813B8, complete sequence Length = 205004 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 487 tcatctttgctccatttccca 507 ||||||||||||||||||||| Sbjct: 15942 tcatctttgctccatttccca 15922
>gb|AC022821.9| Homo sapiens chromosome 8, clone RP11-51M18, complete sequence Length = 171721 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 487 tcatctttgctccatttccca 507 ||||||||||||||||||||| Sbjct: 144321 tcatctttgctccatttccca 144301
>gb|AC148296.3| Pan troglodytes BAC clone CH251-545I16 from chromosome 7, complete sequence Length = 187553 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 487 tcatctttgctccatttccca 507 ||||||||||||||||||||| Sbjct: 133909 tcatctttgctccatttccca 133929
>gb|AC160964.1| Mus musculus BAC clone RP24-316G24 from chromosome 9, complete sequence Length = 158842 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 490 tctttgctccatttcccatct 510 ||||||||||||||||||||| Sbjct: 124464 tctttgctccatttcccatct 124444
>dbj|AK086389.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched library, clone:D930025A16 product:unclassifiable, full insert sequence Length = 2558 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 490 tctttgctccatttcccatct 510 ||||||||||||||||||||| Sbjct: 1518 tctttgctccatttcccatct 1538
>gb|AC093393.3| Homo sapiens BAC clone RP11-816B18 from 2, complete sequence Length = 120450 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 487 tcatctttgctccatttccca 507 ||||||||||||||||||||| Sbjct: 58605 tcatctttgctccatttccca 58625
>gb|AC163102.5| Mus musculus chromosome 18, clone RP23-270E10, complete sequence Length = 179127 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 496 ctccatttcccatctcccccagaa 519 |||||| ||||||||||||||||| Sbjct: 5060 ctccatctcccatctcccccagaa 5037
>gb|DP000016.1| Pan troglodytes target 1 genomic scaffold Length = 1623484 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 gccagcctcatatccttctg 286 |||||||||||||||||||| Sbjct: 841246 gccagcctcatatccttctg 841265
>gb|AC087729.2| Pan troglodytes clone RP43-143F17, complete sequence Length = 208928 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 gccagcctcatatccttctg 286 |||||||||||||||||||| Sbjct: 142687 gccagcctcatatccttctg 142706
>gb|AC106873.3| Homo sapiens BAC clone RP11-374M7 from 7, complete sequence Length = 99596 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 gccagcctcatatccttctg 286 |||||||||||||||||||| Sbjct: 39555 gccagcctcatatccttctg 39574
>gb|AC098886.4| Mus musculus BAC clone RP23-122M21 from 4, complete sequence Length = 219825 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 taagcccatgggtaggagga 56 |||||||||||||||||||| Sbjct: 119118 taagcccatgggtaggagga 119099
>gb|AC091320.5| Homo sapiens BAC clone RP11-447A2 from 7, complete sequence Length = 179728 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 catatccttctgctgatgtt 294 |||||||||||||||||||| Sbjct: 81155 catatccttctgctgatgtt 81174
>gb|AC163720.2| Mus musculus BAC clone RP23-424C5 from chromosome 16, complete sequence Length = 206284 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 520 agaacgacttcttcccaagt 539 |||||||||||||||||||| Sbjct: 6799 agaacgacttcttcccaagt 6780
>emb|AL939109.1|SCO939109 Streptomyces coelicolor A3(2) complete genome; segment 6/29 Length = 277000 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 caccgagatccaggacatca 389 |||||||||||||||||||| Sbjct: 228108 caccgagatccaggacatca 228089
>dbj|AK136847.1| Mus musculus adult male diencephalon cDNA, RIKEN full-length enriched library, clone:9330129O16 product:hypothetical protein, full insert sequence Length = 2624 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 340 ctttcatcttgaacatcggatttg 363 ||||||||||||||||| |||||| Sbjct: 738 ctttcatcttgaacatctgatttg 761
>gb|AC023194.9| Homo sapiens, clone RP11-216N21, complete sequence Length = 175834 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 177 ccaagtcccaagcttcttgctttc 200 |||||||||||| ||||||||||| Sbjct: 41834 ccaagtcccaagtttcttgctttc 41857
>gb|AC016074.6| Homo sapiens, clone RP11-697B24, complete sequence Length = 164239 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 522 aacgacttcttcccaagtatgtca 545 ||||| |||||||||||||||||| Sbjct: 104647 aacgatttcttcccaagtatgtca 104670
>gb|AF516609.1| Malus x domestica putative disease resistance gene analog NBS-LRR (FRGA-A3) gene, partial cds Length = 519 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 aagcttcttgctttcttgaa 205 |||||||||||||||||||| Sbjct: 68 aagcttcttgctttcttgaa 87
>gb|DP000025.1| Gorilla gorilla gorilla target 1 genomic scaffold Length = 1787293 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 gccagcctcatatccttctg 286 |||||||||||||||||||| Sbjct: 759389 gccagcctcatatccttctg 759408
>gb|DP000026.1| Pongo pygmaeus target 1 genomic scaffold Length = 1819346 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 gccagcctcatatccttctg 286 |||||||||||||||||||| Sbjct: 727046 gccagcctcatatccttctg 727065
>gb|AC007098.4| Homo sapiens BAC clone RP11-443F16 from 2, complete sequence Length = 157650 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 466 tgatcatgttgaccaccagt 485 |||||||||||||||||||| Sbjct: 139293 tgatcatgttgaccaccagt 139312
>gb|AY170493.1| Glycine max Rga332 disease resistance protein-like protein pseudogene, partial sequence Length = 457 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 aagcttcttgctttcttgaa 205 |||||||||||||||||||| Sbjct: 33 aagcttcttgctttcttgaa 52
>gb|AY170483.1| Glycine max Rga37 disease resistance protein-like protein pseudogene, partial sequence Length = 462 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 aagcttcttgctttcttgaa 205 |||||||||||||||||||| Sbjct: 33 aagcttcttgctttcttgaa 52
>gb|AY170480.1| Glycine max Rga32 disease resistance protein-like protein pseudogene, partial sequence Length = 462 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 aagcttcttgctttcttgaa 205 |||||||||||||||||||| Sbjct: 33 aagcttcttgctttcttgaa 52
>gb|AF175394.1|AF175394 Glycine max resistance protein LM12 mRNA, partial cds Length = 1314 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 aagcttcttgctttcttgaa 205 |||||||||||||||||||| Sbjct: 716 aagcttcttgctttcttgaa 735
>emb|AL672124.13| Mouse DNA sequence from clone RP23-392H8 on chromosome X, complete sequence Length = 197404 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 412 cacttttgtcagccaaacag 431 |||||||||||||||||||| Sbjct: 37039 cacttttgtcagccaaacag 37058
>emb|CR792438.14| Zebrafish DNA sequence from clone DKEY-20J1 in linkage group 3, complete sequence Length = 135329 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 498 ccatttcccatctcccccag 517 |||||||||||||||||||| Sbjct: 59528 ccatttcccatctcccccag 59547
>gb|AC007544.4| Homo sapiens 12 BAC RP11-12D15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 119034 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 caagaatatctgcatgccca 80 |||||||||||||||||||| Sbjct: 33665 caagaatatctgcatgccca 33646
>gb|AC111031.8| Mus musculus chromosome 18, clone RP23-447L21, complete sequence Length = 177570 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 496 ctccatttcccatctcccccagaa 519 |||||| ||||||||||||||||| Sbjct: 121960 ctccatctcccatctcccccagaa 121937
>gb|AF071302.1|AF071302 HIV-1 isolate I3106-c from The Netherlands, gag protein (gag) gene, partial cds Length = 738 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 agcagcagctgcgactggca 234 |||||||||||||||||||| Sbjct: 285 agcagcagctgcgactggca 304
>gb|U56888.1|HIVU56888 Human immunodeficiency virus type 1 gag polyprotein (gag) gene, partial cds Length = 402 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 agcagcagctgcgactggca 234 |||||||||||||||||||| Sbjct: 351 agcagcagctgcgactggca 370
>gb|U55805.1|GMU55805 Glycine max clone RLG3 disease resistance protein homolog gene, partial cds Length = 512 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 aagcttcttgctttcttgaa 205 |||||||||||||||||||| Sbjct: 62 aagcttcttgctttcttgaa 81
>emb|CT009704.12| Mouse DNA sequence from clone RP23-115B21 on chromosome 16, complete sequence Length = 226520 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 520 agaacgacttcttcccaagt 539 |||||||||||||||||||| Sbjct: 115394 agaacgacttcttcccaagt 115375
>gb|AC140457.3| Mus musculus BAC clone RP23-15F7 from 12, complete sequence Length = 215722 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 374 gagatccaggacatcaagaa 393 |||||||||||||||||||| Sbjct: 80675 gagatccaggacatcaagaa 80656
>emb|AL844145.9| Mouse DNA sequence from clone RP23-403F4 on chromosome 2, complete sequence Length = 173053 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 340 ctttcatcttgaacatcggatttg 363 ||||||||||||||||| |||||| Sbjct: 131828 ctttcatcttgaacatctgatttg 131851
>emb|AL606907.9| Mouse DNA sequence from clone RP23-230F2 on chromosome 4, complete sequence Length = 208265 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 taagcccatgggtaggagga 56 |||||||||||||||||||| Sbjct: 107561 taagcccatgggtaggagga 107542
>emb|X99229.1|MMENPOU M.musculus enhancer DNA for POU domain transcription factor Length = 397 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 taagcccatgggtaggagga 56 |||||||||||||||||||| Sbjct: 265 taagcccatgggtaggagga 284
>gb|AC116547.2| Homo sapiens chromosome 8 clone RP11-314C19 map 8q24.2, complete sequence Length = 166683 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 522 aacgacttcttcccaagtatgtca 545 ||||| |||||||||||||||||| Sbjct: 126069 aacgatttcttcccaagtatgtca 126092 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,024,089 Number of Sequences: 3902068 Number of extensions: 5024089 Number of successful extensions: 113226 Number of sequences better than 10.0: 73 Number of HSP's better than 10.0 without gapping: 73 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 112957 Number of HSP's gapped (non-prelim): 254 length of query: 596 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 573 effective length of database: 17,143,297,704 effective search space: 9823109584392 effective search space used: 9823109584392 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)