ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd19d05 |
|---|---|
| Clone Library Name | barley_pub |
>SALT_ORYSA (P24120) Salt stress-induced protein (Salt protein)| Length = 144 Score = 42.7 bits (99), Expect = 3e-04 Identities = 19/49 (38%), Positives = 27/49 (55%) Frame = -1 Query: 421 IITSKGVXSTFGSGSXIPFRVPVLXGGKIAGFFGRAGAFLDAIGFYITP 275 I+TS G + F +P+ G + GFFGR+G +DAIG Y+ P Sbjct: 96 IVTSANNTYEAGVPNGKEFSIPLQDSGHVVGFFGRSGTLIDAIGIYVHP 144
>GOS9_ORYSA (P27349) Protein GOS9| Length = 139 Score = 42.4 bits (98), Expect = 4e-04 Identities = 19/37 (51%), Positives = 24/37 (64%) Frame = -1 Query: 391 FGSGSXIPFRVPVLXGGKIAGFFGRAGAFLDAIGFYI 281 FG G F +P L G + GFFGRAGA +D+IG Y+ Sbjct: 102 FGQGGGTAFSLP-LQSGSVVGFFGRAGALVDSIGVYV 137
>LEC_PARPC (P83304) Mannose/glucose-specific lectin (Fragment)| Length = 447 Score = 40.0 bits (92), Expect = 0.002 Identities = 18/47 (38%), Positives = 25/47 (53%) Frame = -1 Query: 415 TSKGVXSTFGSGSXIPFRVPVLXGGKIAGFFGRAGAFLDAIGFYITP 275 T+ FG S F +P+ + GF GRAG +LDAIG ++ P Sbjct: 398 TNLATYGPFGKASATSFSIPI-HNNMVVGFHGRAGDYLDAIGIFVKP 443 Score = 38.9 bits (89), Expect = 0.005 Identities = 18/48 (37%), Positives = 27/48 (56%) Frame = -1 Query: 418 ITSKGVXSTFGSGSXIPFRVPVLXGGKIAGFFGRAGAFLDAIGFYITP 275 IT+ FG S F +P+ G + GF G++G +LD+IG Y+ P Sbjct: 248 ITNVTKHGPFGIASGTSFSIPI-EGSLVTGFHGKSGYYLDSIGIYVKP 294 Score = 34.7 bits (78), Expect = 0.094 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Frame = -1 Query: 418 ITSKGVXSTFGSGSX-IPFRVPVLXGGKIAGFFGRAGAFLDAIGFYITP 275 IT+ FGS S F +P+ + GF GRAG +LDA+G ++ P Sbjct: 101 ITNLTTYGPFGSTSGGESFSIPI-ADSVVVGFHGRAGYYLDALGIFVQP 148
>MB12_ARATH (Q9SAV0) Myrosinase-binding protein-like At1g52040| Length = 462 Score = 37.7 bits (86), Expect = 0.011 Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Frame = -1 Query: 415 TSKGVXST-FGSGSXIPFRVPVLXGGKIAGFFGRAGAFLDAIGFYITP*MVG*YRPATSP 239 TSKG S FG + F + GGK+AGF G+A L A+G Y P T Sbjct: 253 TSKGTTSPPFGMVTEKKFELKDGNGGKLAGFHGKASDVLYALGAYFAPSTTSTTPSTTKK 312 Query: 238 LEEGGG 221 L+ GG Sbjct: 313 LQARGG 318 Score = 28.5 bits (62), Expect = 6.7 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = -1 Query: 415 TSKGVXSTFGSGSXIPFRVPVLXGGKIAGFFGRAGAFLDAIGFYITP 275 T+K FG + F + G K+ GF G+AG + IG +I P Sbjct: 408 TNKRTSQPFGMTAGEHFELKE-DGYKVVGFHGKAGDLVHQIGVHIVP 453
>MB32_ARATH (O04312) Myrosinase-binding protein-like At3g16440| Length = 300 Score = 33.9 bits (76), Expect = 0.16 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 1/47 (2%) Frame = -1 Query: 415 TSKGVXST-FGSGSXIPFRVPVLXGGKIAGFFGRAGAFLDAIGFYIT 278 T KG S +G + F + GGK+ GF GRAG L A+G Y T Sbjct: 99 TFKGKTSPPYGLDTENKFVLKEKNGGKLVGFHGRAGEILYALGAYFT 145
>LECA_CASCR (P82859) Agglutinin (CCA)| Length = 309 Score = 33.9 bits (76), Expect = 0.16 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Frame = -1 Query: 415 TSKGVX-STFGSGSXIPFRVPVLXGGKIAGFFGRAGAFLDAIGFYI 281 T+KG +G + PF GG I GF GR+G LDAIG Y+ Sbjct: 102 TNKGTEYGPYGVVTGQPFSYST-EGGVIVGFHGRSGTLLDAIGAYV 146 Score = 32.7 bits (73), Expect = 0.36 Identities = 12/21 (57%), Positives = 18/21 (85%) Frame = -1 Query: 343 GKIAGFFGRAGAFLDAIGFYI 281 G++ GF GR+GA+LDAIG ++ Sbjct: 286 GRVVGFHGRSGAYLDAIGVHM 306
>MB11_ARATH (Q9SAV1) Myrosinase-binding protein-like At1g52030 (MBP)| Length = 642 Score = 32.3 bits (72), Expect = 0.46 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = -1 Query: 406 GVXSTFGSGSXIPFRVPVLXGGKIAGFFGRAGAFLDAIG 290 G + G+ + F + GGK+ GF GR+G LDAIG Sbjct: 108 GHTTLLGNPAGKEFMLESKYGGKLLGFHGRSGEALDAIG 146 Score = 31.2 bits (69), Expect = 1.0 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Frame = -1 Query: 415 TSKGVXST-FGSGSXIPFRVPVLXGGKIAGFFGRAGAFLDAIGFYITP 275 T KG+ S FG + + GGK+ GF G+A L A+G Y P Sbjct: 430 TFKGITSQPFGMETEKKLELKDGKGGKLVGFHGKASDVLYALGAYFAP 477 Score = 29.6 bits (65), Expect = 3.0 Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 3/76 (3%) Frame = -1 Query: 415 TSKGVXS-TFGS--GSXIPFRVPVLXGGKIAGFFGRAGAFLDAIGFYITP*MVG*YRPAT 245 TSKG S FG+ GS F K+ GF GR+G +DA+G + P PA Sbjct: 245 TSKGRTSPVFGNVVGSKFVFEETSF---KLVGFCGRSGEAIDALGAHFAPLPAPTPAPAP 301 Query: 244 SPLEEGGGVVLPAASA 197 +P PA ++ Sbjct: 302 APAPAPAPAPSPAPAS 317
>MB22_ARATH (O80950) Myrosinase-binding protein-like At2g39310| Length = 458 Score = 32.0 bits (71), Expect = 0.61 Identities = 19/48 (39%), Positives = 25/48 (52%) Frame = -1 Query: 418 ITSKGVXSTFGSGSXIPFRVPVLXGGKIAGFFGRAGAFLDAIGFYITP 275 +TSKG S FG F V G ++ GF G+ A +DA+G Y P Sbjct: 255 LTSKGRTSFFGYNVGKKF-VLEQKGHRLVGFHGKEDAAIDALGAYFGP 301 Score = 30.0 bits (66), Expect = 2.3 Identities = 13/21 (61%), Positives = 15/21 (71%) Frame = -1 Query: 346 GGKIAGFFGRAGAFLDAIGFY 284 G KI GF GRAG +DA+G Y Sbjct: 130 GKKIVGFHGRAGDAVDALGVY 150
>YK66_SCHPO (Q9US12) Hypothetical zinc metalloproteinase C607.06c (EC 3.4.24.-)| Length = 612 Score = 32.0 bits (71), Expect = 0.61 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 4/51 (7%) Frame = -1 Query: 421 IITSKGVXSTF----GSGSXIPFRVPVLXGGKIAGFFGRAGAFLDAIGFYI 281 I+ G S F G + VP G ++ GF+G G F+D+IGF+I Sbjct: 563 IVLENGKTSPFYGNANGGGLKSYLVP--KGFQLVGFYGTLGPFMDSIGFFI 611
>V70K_EPMV (P20129) 70 kDa protein| Length = 649 Score = 31.6 bits (70), Expect = 0.79 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 6/71 (8%) Frame = +2 Query: 104 IPRLENRSVTHNHTHMLKCHVRHFTSLFILASRRCR*YYATSFLQR------RSGRPIST 265 IPR++ S H L H+ HF+ F L RC +S +R R+ P+ Sbjct: 112 IPRVDQLSTHCRRHHSLPLHLTHFSKQFNLLHARCSDVLFSSSDRRSLHSVSRTRDPVLQ 171 Query: 266 NHSWSNVEPNR 298 +HS S V +R Sbjct: 172 SHSASRVSFHR 182
>MB23_ARATH (O80948) Myrosinase-binding protein-like At2g39330| Length = 459 Score = 31.6 bits (70), Expect = 0.79 Identities = 17/47 (36%), Positives = 25/47 (53%) Frame = -1 Query: 415 TSKGVXSTFGSGSXIPFRVPVLXGGKIAGFFGRAGAFLDAIGFYITP 275 TSKG S G F++ G ++ GF G+ G+ +DA+G Y P Sbjct: 257 TSKGRTSFSGYKGGKKFKLEQ-KGRRLVGFHGKEGSAIDALGAYFAP 302 Score = 30.0 bits (66), Expect = 2.3 Identities = 13/21 (61%), Positives = 15/21 (71%) Frame = -1 Query: 346 GGKIAGFFGRAGAFLDAIGFY 284 G KI GF GR+G LDA+G Y Sbjct: 130 GKKIVGFHGRSGNALDALGVY 150
>ARI5B_HUMAN (Q14865) AT-rich interactive domain-containing protein 5B (ARID| domain-containing protein 5B) (Mrf1-like) (Modulator recognition factor 2) (MRF-2) Length = 1188 Score = 30.8 bits (68), Expect = 1.4 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 8/67 (11%) Frame = +2 Query: 14 HMCAFTRNAW--PQLITXRRHAQHMIHTH*------HDIPRLENRSVTHNHTHMLKCHVR 169 HM +F + + P L + RH +H +H D+ R S +H H K HV Sbjct: 823 HMPSFLADFYSSPHLHSLYRHTEHHLHNEQTSKYPSRDMYRESENSSFPSHRHQEKLHVN 882 Query: 170 HFTSLFI 190 + TSL + Sbjct: 883 YLTSLHL 889
>MB31_ARATH (O04309) Myrosinase-binding protein-like At3g16470| Length = 451 Score = 30.8 bits (68), Expect = 1.4 Identities = 16/42 (38%), Positives = 21/42 (50%) Frame = -1 Query: 352 LXGGKIAGFFGRAGAFLDAIGFYITP*MVG*YRPATSPLEEG 227 L GGKI GF G + + ++G YI P P T P+ G Sbjct: 118 LGGGKIVGFHGSSSDLIHSVGVYIIPSTT----PLTPPVSGG 155 Score = 29.3 bits (64), Expect = 3.9 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -1 Query: 352 LXGGKIAGFFGRAGAFLDAIGFYITP 275 L GGKI GF G + + ++G YI P Sbjct: 272 LGGGKIVGFHGTSSDLIHSLGAYIIP 297
>CD2_HORSE (P37998) T-cell surface antigen CD2 precursor| Length = 347 Score = 30.4 bits (67), Expect = 1.8 Identities = 20/67 (29%), Positives = 26/67 (38%) Frame = +3 Query: 207 AGSTTPPPSSRGEVAGRYQPTIHGVM*NPIASRKAPARPKKPAILPPXSTGTRNGIXEPE 386 A S PPP S A ++P + G P R + K+PA P + G P Sbjct: 273 AASQPPPPPSHRPQAPGHRPQVPGHRPLPPGHRVQHQQQKRPAPTPGTQAHQQKGPPLPR 332 Query: 387 PNVLXTP 407 P V P Sbjct: 333 PRVQPKP 339
>MB33_ARATH (Q9SDM9) Myrosinase-binding protein-like At3g16400| Length = 470 Score = 30.4 bits (67), Expect = 1.8 Identities = 13/26 (50%), Positives = 18/26 (69%) Frame = -1 Query: 355 VLXGGKIAGFFGRAGAFLDAIGFYIT 278 VL GGKI GF GR+ L ++G Y++ Sbjct: 117 VLHGGKIVGFHGRSTDVLHSLGAYVS 142
>HERPU_HUMAN (Q15011) Homocysteine-responsive endoplasmic reticulum-resident| ubiquitin-like domain member 1 protein (Methyl methanesulfonate (MMF)-inducible fragment protein 1) Length = 391 Score = 30.4 bits (67), Expect = 1.8 Identities = 26/98 (26%), Positives = 37/98 (37%), Gaps = 7/98 (7%) Frame = +1 Query: 139 SHTYAKVPCKALHKFIYSSKQTLP-VVLRHLLPPEEK-----WPADINQPF-ME*CRTQS 297 S Y + P + IYS K L LR LLP +EK ++ P M + Sbjct: 42 SRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCNVKSPSKMPEINAKV 101 Query: 298 RPGKHQPVQRSRRSYPRQAPGRGMEXRNLSRMYWXPPW 411 +P +R YP + G+ R + R P W Sbjct: 102 AESTEEPAGSNRGQYPEDSSSDGLRQREVLRNLSSPGW 139
>MB21_ARATH (O80998) Myrosinase-binding protein-like At2g25980| Length = 449 Score = 30.0 bits (66), Expect = 2.3 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = -1 Query: 352 LXGGKIAGFFGRAGAFLDAIGFYITP 275 + G KI GF G A A L ++G Y TP Sbjct: 119 ISGNKITGFHGSADANLKSLGAYFTP 144
>RIMS1_RAT (Q9JIR4) Regulating synaptic membrane exocytosis protein 1| (Rab3-interacting molecule 1) (RIM 1) Length = 1615 Score = 30.0 bits (66), Expect = 2.3 Identities = 17/51 (33%), Positives = 21/51 (41%) Frame = +3 Query: 195 QADAAGSTTPPPSSRGEVAGRYQPTIHGVM*NPIASRKAPARPKKPAILPP 347 +A A +PP S R A PT HG P PA P +P + P Sbjct: 435 RAPATARVSPPESPRARAAAAQPPTEHGP--PPPRPAPGPAEPPEPRVPEP 483
>ZG16_HUMAN (O60844) Zymogen granule membrane protein 16 precursor (Zymogen| granule protein 16) (Secretory lectin ZG16) Length = 167 Score = 29.6 bits (65), Expect = 3.0 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Frame = -1 Query: 418 ITSKGVXSTFGSGSXIPFRVPVLXGGKIAGFF-GRAGAFLDAIGFY 284 +T KG +FG S F L + F GR+G+ +DAIG + Sbjct: 111 VTDKGRYLSFGKDSGTSFNAVPLHPNTVLRFISGRSGSLIDAIGLH 156
>SWR1_NEUCR (Q7S133) Helicase swr-1 (EC 3.6.1.-)| Length = 1845 Score = 29.3 bits (64), Expect = 3.9 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%) Frame = +3 Query: 207 AGSTTPPPSSRGEVAGRYQPTIHGVM*NPIASRKAPARPKKPAILP-PXSTGTR 365 A + PPP + R T H + SR+ P++PA P P + GTR Sbjct: 245 APAKMPPPPPPPKAPARKSATTHETRPSASRSRRRSPSPRRPATPPKPAAVGTR 298
>NBEA_MOUSE (Q9EPN1) Protein neurobeachin (Lysosomal trafficking regulator 2)| Length = 2936 Score = 28.9 bits (63), Expect = 5.1 Identities = 19/66 (28%), Positives = 32/66 (48%) Frame = -2 Query: 228 EVA*YYRQRLLARINKLVKCLTWHFSICV*LCVTLRFSSRGMSCQCVWIICCACLRXVIS 49 E A + RL+A ++ LV + +FS + SS G+ QC+ ++CC +R + Sbjct: 1419 ETAVTFLSRLMAMVDVLVFASSLNFSE---IEAEKNMSSGGLMRQCLRLVCCVAVRNCLE 1475 Query: 48 *GQALR 31 Q R Sbjct: 1476 CRQRQR 1481
>GP63_LEIMA (P08148) Leishmanolysin precursor (EC 3.4.24.36) (Cell surface| protease) (Major surface glycoprotein) (Protein gp63) (Promastigote surface endopeptidase) (Major surface protease) Length = 602 Score = 28.9 bits (63), Expect = 5.1 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%) Frame = -2 Query: 408 RGXPVHSAQVPX--FHSASRCLXGVRSPASLDGLVLSWTRL 292 R H++ +P F A+RC+ G P + DG+V S+ L Sbjct: 469 RASEAHASLLPFNVFSDAARCIDGAFRPKATDGIVKSYAGL 509
>NBEA_CHICK (Q9DDD5) Protein neurobeachin (Fragment)| Length = 793 Score = 28.9 bits (63), Expect = 5.1 Identities = 19/66 (28%), Positives = 32/66 (48%) Frame = -2 Query: 228 EVA*YYRQRLLARINKLVKCLTWHFSICV*LCVTLRFSSRGMSCQCVWIICCACLRXVIS 49 E A + RL+A ++ LV + +FS + SS G+ QC+ ++CC +R + Sbjct: 527 ETAVTFLSRLMAMVDVLVFASSLNFSE---IEAEKNMSSGGLMRQCLRLVCCVAVRNCLE 583 Query: 48 *GQALR 31 Q R Sbjct: 584 CRQRQR 589
>NBEA_HUMAN (Q8NFP9) Protein neurobeachin (Lysosomal trafficking regulator 2)| (Protein BCL8B) Length = 2946 Score = 28.9 bits (63), Expect = 5.1 Identities = 19/66 (28%), Positives = 32/66 (48%) Frame = -2 Query: 228 EVA*YYRQRLLARINKLVKCLTWHFSICV*LCVTLRFSSRGMSCQCVWIICCACLRXVIS 49 E A + RL+A ++ LV + +FS + SS G+ QC+ ++CC +R + Sbjct: 1429 ETAVTFLSRLMAMVDVLVFASSLNFSE---IEAEKNMSSGGLMRQCLRLVCCVAVRNCLE 1485 Query: 48 *GQALR 31 Q R Sbjct: 1486 CRQRQR 1491
>CYB6_CHLTE (Q9F721) Cytochrome bc complex cytochrome b subunit| Length = 427 Score = 28.5 bits (62), Expect = 6.7 Identities = 23/66 (34%), Positives = 29/66 (43%) Frame = +3 Query: 195 QADAAGSTTPPPSSRGEVAGRYQPTIHGVM*NPIASRKAPARPKKPAILPPXSTGTRNGI 374 Q AAG T P + V G +P G P A KAPA+P PA P + + Sbjct: 5 QNPAAG--TAPAKPKPAVPGAAKPAAPGAA-KPAA--KAPAKPAAPAATAPSGV-YKPPV 58 Query: 375 XEPEPN 392 P+PN Sbjct: 59 DRPDPN 64
>WASL_BOVIN (Q95107) Neural Wiskott-Aldrich syndrome protein (N-WASP)| Length = 505 Score = 28.5 bits (62), Expect = 6.7 Identities = 19/58 (32%), Positives = 22/58 (37%), Gaps = 2/58 (3%) Frame = +3 Query: 222 PPPSSRGEVAGRYQPTIHGVM*NPIASRKAPARP--KKPAILPPXSTGTRNGIXEPEP 389 PPPS G P G P R AP P + P PP +R G+ P P Sbjct: 280 PPPSRGGPPPPPPPPHSSGPPPPPARGRGAPPPPPSRAPTAAPPPPPPSRPGVGAPPP 337
>ENV_MLVHO (P21436) Env polyprotein precursor [Contains: Coat protein GP76;| Spike protein p15E] Length = 666 Score = 28.1 bits (61), Expect = 8.8 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +3 Query: 288 NPIASRKAPARPKKPAILPPXSTGTRNG 371 NP+ S + P +PA LPP S T+ G Sbjct: 268 NPVLSEQRPPSQPEPARLPPSSNLTQGG 295
>CDK4_XENLA (Q91727) Cell division protein kinase 4 (EC 2.7.11.22)| (Cyclin-dependent kinase 4) Length = 319 Score = 28.1 bits (61), Expect = 8.8 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = +1 Query: 229 LPPEEKWPADINQPFME*CRTQSRPGKHQPVQR 327 LP EE+WP D+ P R+ P QPV + Sbjct: 232 LPSEEEWPVDVTLP-----RSAFSPRTQQPVDK 259 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,218,074 Number of Sequences: 219361 Number of extensions: 1379571 Number of successful extensions: 3616 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 3474 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3607 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2278320915 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
