ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd18o04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|U73218.1|TAU73218 Triticum aestivum chlorophyll a/b-binding p... 76 2e-11
2gb|AY389597.1| Hyacinthus orientalis chloroplast chlorophyll a/b... 72 4e-10
3gb|AY389549.1| Hyacinthus orientalis chloroplast chlorophyll A-B... 58 6e-06
4gb|AF458406.1|AF458406 Brassica oleracea chlorophyll a/b binding... 58 6e-06
5gb|AF034631.1|AF034631 Panax ginseng chlorophyll a/b binding pro... 58 6e-06
6emb|X55892.1|ZMLHCABB Zea mays L. mRNA for light-harvesting chlo... 56 2e-05
7gb|U74295.1|OSU74295 Oryza sativa chlorophyll a/b binding protei... 56 2e-05
8emb|X68333.1|HHLHC H.helix mRNA for light harvesting chlorophyll... 54 9e-05
9gb|L07119.1|COTIIABINA Gossypium hirsutum chloroplast photosyste... 54 9e-05
10emb|AJ131044.1|CAR131044 Cicer arietinum mRNA for chlorophyll a/... 52 4e-04
11emb|X12735.1|HVCAB2 Barley Cab-2 gene for major light-harvesting... 52 4e-04
12gb|U20983.1|STU20983 Solanum tuberosum chlorophyll a/b binding p... 50 0.001
13ref|NM_191799.1| Oryza sativa (japonica cultivar-group), predic... 48 0.006
14gb|AY100470.1| Oryza sativa (indica cultivar-group) putative sol... 48 0.006
15dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.006
16dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.006
17dbj|AP003292.2| Oryza sativa (japonica cultivar-group) genomic D... 48 0.006
18dbj|AP005313.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.006
19dbj|AP005700.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.006
20dbj|AK104350.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.006
21dbj|AK104288.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.006
22dbj|AK104281.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.006
23dbj|AK104176.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.006
24dbj|AK103946.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.006
25dbj|AK062725.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.006
26dbj|AK060851.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.006
27dbj|AK058312.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.006
28dbj|AK058305.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.006
29dbj|AK058289.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.006
30gb|M29334.1|LGILHCPABP L.gibba light-harvesting chlorophyll a/b ... 48 0.006
31dbj|D00641.1|RICLHCP1 Oryza sativa (japonica cultivar-group) mRN... 48 0.006
32gb|AY430082.1| Trifolium pratense chlorophyll a/b binding protei... 46 0.022
33gb|AY288914.1| Brassica oleracea chlorophyll a/b binding protein... 46 0.022
34gb|AF279250.1|AF279250 Vigna radiata LHCII type I chlorophyll a/... 46 0.022
35emb|X02358.1|PECAB25 Petunia gene for chlorophyll a/b binding pr... 46 0.022
36gb|K00976.1|PETCAB102 Petunia major chlorophyll a/b binding prot... 46 0.022
37gb|AF003127.1|AF003127 Mesembryanthemum crystallinum chlorophyll... 46 0.022
38emb|X02357.1|PECAB13 Petunia gene for chlorophyll a/b binding pr... 44 0.087
39ref|NM_128995.2| Arabidopsis thaliana LHB1B1; chlorophyll bindin... 42 0.34
40ref|NM_102732.2| Arabidopsis thaliana CAB2; chlorophyll binding ... 42 0.34
41gb|BT015572.1| Arabidopsis thaliana At1g29910 mRNA sequence 42 0.34
42gb|BT000726.1| Arabidopsis thaliana clone RAFL06-67-G16 (R11472)... 42 0.34
43gb|AF339687.1| Arabidopsis thaliana putative photosystem II type... 42 0.34
44gb|AF326864.1| Arabidopsis thaliana putative photosystem II type... 42 0.34
45gb|AY128345.1| Arabidopsis thaliana photosystem II type I chloro... 42 0.34
46gb|AY120776.1| Arabidopsis thaliana putative photosystem II type... 42 0.34
47gb|AC004481.3| Arabidopsis thaliana chromosome 2 clone F13P17 ma... 42 0.34
48gb|AC004077.3| Arabidopsis thaliana chromosome 2 clone T31E10 ma... 42 0.34
49gb|AY081572.1| Arabidopsis thaliana chlorophyll a/b-binding prot... 42 0.34
50gb|AY062814.1| Arabidopsis thaliana chlorophyll a/b-binding prot... 42 0.34
51gb|AY060500.1| Arabidopsis thaliana At1g29920/F1N18_80 mRNA, com... 42 0.34
52gb|AY054198.1| Arabidopsis thaliana At1g29920/F1N18_80 mRNA, com... 42 0.34
53gb|AY052237.1| Arabidopsis thaliana At1g29920/F1N18_80 mRNA, com... 42 0.34
54gb|AF324693.2|AF324693 Arabidopsis thaliana At2g34430 (At2g34430... 42 0.34
55emb|BX819881.1|CNS0AA6O Arabidopsis thaliana Full-length cDNA Co... 42 0.34
56gb|AF039598.1| Prunus persica light harvesting chlorophyll A/B b... 42 0.34
57gb|AC008030.4|AC008030 Arabidopsis thaliana chromosome I BAC F1N... 42 0.34
58gb|AY086905.1| Arabidopsis thaliana clone 29298 mRNA, complete s... 42 0.34
59gb|AY086307.1| Arabidopsis thaliana clone 23727 mRNA, complete s... 42 0.34
60gb|AF220527.1|AF220527 Euphorbia esula chlorophyll a/b binding p... 42 0.34
61emb|X64459.1|ATLHB1B1 A.thaliana Lhb1B1 gene for photosystem II ... 42 0.34
62emb|X03907.1|ATLHCP1 A.thaliana gene (LHCP AB 165) for chlorophy... 42 0.34
63gb|BT002103.1| Arabidopsis thaliana putative photosystem II type... 42 0.34
64gb|AF072931.1|AF072931 Medicago sativa chlorophyll a/b binding p... 42 0.34
65gb|U39475.1|GMU39475 Glycine max chlorophyll a/b-binding protein... 42 0.34
66gb|M64619.1|PEACAB66 Pea cab gene, complete cds 42 0.34
67gb|K02067.1|PEACAB80 Pea (P.sativum) gene AB80 encoding major li... 42 0.34
68ref|NM_192636.1| Oryza sativa (japonica cultivar-group), predic... 40 1.4
69emb|X53398.1|ZMCABM7 Z.mays cab-m7 gene for light harvesting chl... 40 1.4
70ref|XM_532229.2| PREDICTED: Canis familiaris similar to 35 kDa S... 40 1.4
71emb|X13908.1|OSCABR1 Rice cab1R gene for light harvesting chloro... 40 1.4
72emb|CR717240.1|PCC21H1 P. carinii cosmid 21H1 40 1.4
73emb|AL080316.8|HSJ104O17 Human DNA sequence from clone RP1-104O1... 40 1.4
74dbj|AP003278.5| Oryza sativa (japonica cultivar-group) genomic D... 40 1.4
75emb|X63205.1|ZMCAB48 Zea mays cab48 gene for chlorophyll a/b bin... 40 1.4
76dbj|AK121563.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 1.4
77dbj|AK119173.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 1.4
78emb|Y00379.1|ZMLHCP Maize mRNA for light-harvesting chlorophyll ... 40 1.4
79emb|Y13865.1|BVCHLOROP Beta vulgaris mRNA for chlorophyll a/b-bi... 40 1.4
80emb|X13909.1|OSCABR2 Rice cab2R gene for light harvesting chloro... 40 1.4
81dbj|AK061619.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 1.4
82gb|AY109324.1| Zea mays CL187_1 mRNA sequence 40 1.4
83gb|AY845253.1| Pisum sativum light-harvesting chlorophyll-a/b bi... 38 5.4
84gb|AC120420.11| Mus musculus chromosome 5, clone RP24-481P22, co... 38 5.4
85ref|XM_642065.1| Dictyostelium discoideum hypothetical protein (... 38 5.4
86ref|XM_633941.1| Dictyostelium discoideum WD-40 repeat-containin... 38 5.4
87gb|AC125346.4| Mus musculus BAC clone RP24-87B17 from chromosome... 38 5.4
88gb|BT014208.1| Lycopersicon esculentum clone 133385R, mRNA sequence 38 5.4
89emb|AL354995.13| Human DNA sequence from clone RP11-512J14 on ch... 38 5.4
90gb|AC116546.1| Homo sapiens 3 BAC RP11-312H1 (Roswell Park Cance... 38 5.4
91emb|BX088585.4| Mouse DNA sequence from clone RP23-185A14 on chr... 38 5.4
92gb|AC106881.9| Homo sapiens BAC clone RP11-710C12 from 4, comple... 38 5.4
93dbj|AK044414.1| Mus musculus adult retina cDNA, RIKEN full-lengt... 38 5.4
94gb|AC114625.11| Mus musculus chromosome 3, clone RP24-107N14, co... 38 5.4
95gb|AY660566.1| Huperzia lucidula chloroplast, complete genome 38 5.4
96emb|BX470163.8| Zebrafish DNA sequence from clone DKEY-27A9 in l... 38 5.4
97emb|X56538.1|PSCABIIC P.sativum Cab-8 gene for photosystemm II c... 38 5.4
98emb|Z75663.1|AGCHLABBP A.graveolens mRNA for chlorophyll a/b bin... 38 5.4
99emb|X16535.1|GMCAB4 G.max DNA for Cab4 38 5.4
100emb|BX784024.10| Zebrafish DNA sequence from clone CH211-239J19 ... 38 5.4
101gb|AC159739.3| Mus musculus BAC clone RP23-442O9 from chromosome... 38 5.4
102gb|AC132257.5| Mus musculus BAC clone RP24-361A4 from 5, complet... 38 5.4
103gb|AC126450.4| Mus musculus BAC clone RP23-379J7 from 3, complet... 38 5.4
104dbj|AP004473.1| Lotus japonicus genomic DNA, chromosome 4, clone... 38 5.4
105emb|X14341.1|SOCABP S.oleracea chloroplast mRNA for chlorophyll ... 38 5.4
106gb|U01964.1|GMU01964 Glycine max cv. Dare photosystem II type I ... 38 5.4
107gb|M14443.1|TOMCBPA Tomato chlorophyll a/b-binding protein gene ... 38 5.4
108gb|M86906.1|PEACHLROPH Pea (subclone AB9) Cab9 gene, 3' end 38 5.4
109gb|M16058.1|CUSLHCPB Cucumber LHCP mRNA encoding chlorophyll a/b... 38 5.4

>gb|U73218.1|TAU73218 Triticum aestivum chlorophyll a/b-binding protein WCAB precursor
           (Wcab) mRNA, complete cds
          Length = 918

 Score = 75.8 bits (38), Expect = 2e-11
 Identities = 54/58 (93%), Gaps = 1/58 (1%)
 Strand = Plus / Minus

                                                                     
Query: 56  ttacttgccggggacaagagttggtggcaaacgcccatgcattgttgttgatggggtc 113
           ||||||||||||||||| |||||||||| || ||||||||||||||||||| ||||||
Sbjct: 810 ttacttgccggggacaa-agttggtggcgaatgcccatgcattgttgttgacggggtc 754



to top

>gb|AY389597.1| Hyacinthus orientalis chloroplast chlorophyll a/b-binding protein
           mRNA, partial cds
          Length = 575

 Score = 71.9 bits (36), Expect = 4e-10
 Identities = 52/56 (92%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                   
Query: 58  acttgccggggacaagagttggtggcaaacgcccatgcattgttgttgatggggtc 113
           ||||||||||||||| ||||||||||||| ||||| ||||||||||||| ||||||
Sbjct: 470 acttgccggggacaa-agttggtggcaaaagcccaggcattgttgttgacggggtc 416



to top

>gb|AY389549.1| Hyacinthus orientalis chloroplast chlorophyll A-B binding protein
           3C (LHCP) mRNA, partial cds
          Length = 661

 Score = 58.0 bits (29), Expect = 6e-06
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                            
Query: 74  agttggtggcaaacgcccatgcattgttgttga 106
           ||||||||||||||||||| |||||||||||||
Sbjct: 657 agttggtggcaaacgcccaggcattgttgttga 625



to top

>gb|AF458406.1|AF458406 Brassica oleracea chlorophyll a/b binding protein (CAB1) mRNA,
           complete cds
          Length = 980

 Score = 58.0 bits (29), Expect = 6e-06
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                            
Query: 74  agttggtggcaaacgcccatgcattgttgttga 106
           ||||||||||||| |||||||||||||||||||
Sbjct: 826 agttggtggcaaaggcccatgcattgttgttga 794



to top

>gb|AF034631.1|AF034631 Panax ginseng chlorophyll a/b binding protein of LHCII type I
           precursor (CAB) mRNA, nuclear gene encoding chloroplast
           protein, complete cds
          Length = 1015

 Score = 58.0 bits (29), Expect = 6e-06
 Identities = 45/49 (91%), Gaps = 1/49 (2%)
 Strand = Plus / Minus

                                                            
Query: 56  ttacttgccggggacaagagttggtggcaaacgcccatgcattgttgtt 104
           |||||| |||||||||| ||||||||||| | |||||||||||||||||
Sbjct: 824 ttactttccggggacaa-agttggtggcataggcccatgcattgttgtt 777



to top

>emb|X55892.1|ZMLHCABB Zea mays L. mRNA for light-harvesting chlorophyll a/b binding
           protein
          Length = 869

 Score = 56.0 bits (28), Expect = 2e-05
 Identities = 50/56 (89%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                   
Query: 58  acttgccggggacaagagttggtggcaaacgcccatgcattgttgttgatggggtc 113
           |||||||||| |||| ||||||||||| | |||||||| |||||||||| ||||||
Sbjct: 808 acttgccgggcacaa-agttggtggcataggcccatgcgttgttgttgacggggtc 754



to top

>gb|U74295.1|OSU74295 Oryza sativa chlorophyll a/b binding protein (kcdl895) mRNA,
           complete cds
          Length = 1022

 Score = 56.0 bits (28), Expect = 2e-05
 Identities = 50/56 (89%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                   
Query: 58  acttgccggggacaagagttggtggcaaacgcccatgcattgttgttgatggggtc 113
           ||||||||||||||| ||||||||||  | |||||||| |||||||||| ||||||
Sbjct: 838 acttgccggggacaa-agttggtggcgtaggcccatgcgttgttgttgacggggtc 784



to top

>emb|X68333.1|HHLHC H.helix mRNA for light harvesting chlorophyll a/b binding protein
          Length = 686

 Score = 54.0 bits (27), Expect = 9e-05
 Identities = 43/47 (91%), Gaps = 1/47 (2%)
 Strand = Plus / Minus

                                                          
Query: 58  acttgccggggacaagagttggtggcaaacgcccatgcattgttgtt 104
           |||| |||||||||| ||||||||||| | |||||||||||||||||
Sbjct: 580 actttccggggacaa-agttggtggcataggcccatgcattgttgtt 535



to top

>gb|L07119.1|COTIIABINA Gossypium hirsutum chloroplast photosystem II chlorophyll
           A/B-binding protein gene, complete cds
          Length = 1260

 Score = 54.0 bits (27), Expect = 9e-05
 Identities = 52/59 (88%), Gaps = 1/59 (1%)
 Strand = Plus / Minus

                                                                      
Query: 58  acttgccggggacaagagttggtggcaaacgcccatgcattgttgttgatggggtcagc 116
           |||| |||||||||| ||||||||||| | ||||| |||||||||||||  ||||||||
Sbjct: 990 actttccggggacaa-agttggtggcataggcccaagcattgttgttgactgggtcagc 933



to top

>emb|AJ131044.1|CAR131044 Cicer arietinum mRNA for chlorophyll a/b binding protein
          Length = 983

 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 74  agttggtggcaaacgcccatgcattgttgttgatggggtcag 115
           ||||||||||| | |||||||||||||||||||  |||||||
Sbjct: 798 agttggtggcataggcccatgcattgttgttgacagggtcag 757



to top

>emb|X12735.1|HVCAB2 Barley Cab-2 gene for major light-harvesting chlorophyll a/b-
           binding protein ( LHCP )
          Length = 1030

 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 51/58 (87%), Gaps = 1/58 (1%)
 Strand = Plus / Minus

                                                                     
Query: 56  ttacttgccggggacaagagttggtggcaaacgcccatgcattgttgttgatggggtc 113
           ||||||||||||||| | |||||||||| || ||||| ||||||||||| | ||||||
Sbjct: 975 ttacttgccggggacga-agttggtggcgaaggcccaggcattgttgtttacggggtc 919



to top

>gb|U20983.1|STU20983 Solanum tuberosum chlorophyll a/b binding protein (Lhcb1-2) gene,
           nuclear gene encoding chloroplast protein, complete cds
          Length = 798

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 74  agttggtggcaaacgcccatgcattgttgttga 106
           |||| |||||||| |||||||||||||||||||
Sbjct: 781 agtttgtggcaaaggcccatgcattgttgttga 749



to top

>ref|NM_191799.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 798

 Score = 48.1 bits (24), Expect = 0.006
 Identities = 49/56 (87%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                   
Query: 58  acttgccggggacaagagttggtggcaaacgcccatgcattgttgttgatggggtc 113
           ||||||||||||| | ||||||||||  | |||||||| |||||||||| ||||||
Sbjct: 796 acttgccggggacga-agttggtggcgtaggcccatgcgttgttgttgacggggtc 742



to top

>gb|AY100470.1| Oryza sativa (indica cultivar-group) putative soluble starch synthase
             IV-1 gene, complete cds
          Length = 15000

 Score = 48.1 bits (24), Expect = 0.006
 Identities = 49/56 (87%), Gaps = 1/56 (1%)
 Strand = Plus / Plus

                                                                     
Query: 58    acttgccggggacaagagttggtggcaaacgcccatgcattgttgttgatggggtc 113
             ||||||||||||| | ||||||||||  | |||||||| |||||||||| ||||||
Sbjct: 13878 acttgccggggacga-agttggtggcgtaggcccatgcgttgttgttgacggggtc 13932



to top

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 48.1 bits (24), Expect = 0.006
 Identities = 49/56 (87%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                        
Query: 58       acttgccggggacaagagttggtggcaaacgcccatgcattgttgttgatggggtc 113
                ||||||||||||| | ||||||||||  ||||||| || |||||||||| ||||||
Sbjct: 10793780 acttgccggggacga-agttggtggcgtacgcccaggcgttgttgttgacggggtc 10793726



to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 48.1 bits (24), Expect = 0.006
 Identities = 49/56 (87%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                        
Query: 58       acttgccggggacaagagttggtggcaaacgcccatgcattgttgttgatggggtc 113
                ||||||||||||| | ||||||||||  | |||||||| |||||||||| ||||||
Sbjct: 30025133 acttgccggggacga-agttggtggcgtaggcccatgcgttgttgttgacggggtc 30025079



 Score = 40.1 bits (20), Expect = 1.4
 Identities = 48/56 (85%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                        
Query: 58       acttgccggggacaagagttggtggcaaacgcccatgcattgttgttgatggggtc 113
                ||||||||||||| | ||||||||||  | ||||| || |||||||||| ||||||
Sbjct: 23604327 acttgccggggacga-agttggtggcgtaggcccaggcgttgttgttgacggggtc 23604273



to top

>dbj|AP003292.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0690B02
          Length = 153116

 Score = 48.1 bits (24), Expect = 0.006
 Identities = 49/56 (87%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                     
Query: 58    acttgccggggacaagagttggtggcaaacgcccatgcattgttgttgatggggtc 113
             ||||||||||||| | ||||||||||  | |||||||| |||||||||| ||||||
Sbjct: 21123 acttgccggggacga-agttggtggcgtaggcccatgcgttgttgttgacggggtc 21069



to top

>dbj|AP005313.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0512H04
          Length = 151049

 Score = 48.1 bits (24), Expect = 0.006
 Identities = 49/56 (87%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                     
Query: 58    acttgccggggacaagagttggtggcaaacgcccatgcattgttgttgatggggtc 113
             ||||||||||||| | ||||||||||  ||||||| || |||||||||| ||||||
Sbjct: 17503 acttgccggggacga-agttggtggcgtacgcccaggcgttgttgttgacggggtc 17449



to top

>dbj|AP005700.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBb0085I16
          Length = 141701

 Score = 48.1 bits (24), Expect = 0.006
 Identities = 49/56 (87%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                      
Query: 58     acttgccggggacaagagttggtggcaaacgcccatgcattgttgttgatggggtc 113
              ||||||||||||| | ||||||||||  ||||||| || |||||||||| ||||||
Sbjct: 130398 acttgccggggacga-agttggtggcgtacgcccaggcgttgttgttgacggggtc 130344



to top

>dbj|AK104350.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-G02, full
           insert sequence
          Length = 1013

 Score = 48.1 bits (24), Expect = 0.006
 Identities = 49/56 (87%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                   
Query: 58  acttgccggggacaagagttggtggcaaacgcccatgcattgttgttgatggggtc 113
           ||||||||||||| | ||||||||||  ||||||| || |||||||||| ||||||
Sbjct: 848 acttgccggggacga-agttggtggcgtacgcccaggcgttgttgttgacggggtc 794



to top

>dbj|AK104288.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-E05, full
           insert sequence
          Length = 1021

 Score = 48.1 bits (24), Expect = 0.006
 Identities = 49/56 (87%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                   
Query: 58  acttgccggggacaagagttggtggcaaacgcccatgcattgttgttgatggggtc 113
           ||||||||||||| | ||||||||||  ||||||| || |||||||||| ||||||
Sbjct: 853 acttgccggggacga-agttggtggcgtacgcccaggcgttgttgttgacggggtc 799



to top

>dbj|AK104281.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-006-D01, full
           insert sequence
          Length = 1056

 Score = 48.1 bits (24), Expect = 0.006
 Identities = 49/56 (87%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                   
Query: 58  acttgccggggacaagagttggtggcaaacgcccatgcattgttgttgatggggtc 113
           ||||||||||||| | ||||||||||  ||||||| || |||||||||| ||||||
Sbjct: 855 acttgccggggacga-agttggtggcgtacgcccaggcgttgttgttgacggggtc 801



to top

>dbj|AK104176.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-C12, full
           insert sequence
          Length = 1055

 Score = 48.1 bits (24), Expect = 0.006
 Identities = 49/56 (87%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                   
Query: 58  acttgccggggacaagagttggtggcaaacgcccatgcattgttgttgatggggtc 113
           ||||||||||||| | ||||||||||  | |||||||| |||||||||| ||||||
Sbjct: 877 acttgccggggacga-agttggtggcgtaggcccatgcgttgttgttgacggggtc 823



to top

>dbj|AK103946.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-B02, full
           insert sequence
          Length = 1055

 Score = 48.1 bits (24), Expect = 0.006
 Identities = 49/56 (87%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                   
Query: 58  acttgccggggacaagagttggtggcaaacgcccatgcattgttgttgatggggtc 113
           ||||||||||||| | ||||||||||  | |||||||| |||||||||| ||||||
Sbjct: 877 acttgccggggacga-agttggtggcgtaggcccatgcgttgttgttgacggggtc 823



to top

>dbj|AK062725.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-106-D08, full
           insert sequence
          Length = 1057

 Score = 48.1 bits (24), Expect = 0.006
 Identities = 49/56 (87%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                   
Query: 58  acttgccggggacaagagttggtggcaaacgcccatgcattgttgttgatggggtc 113
           ||||||||||||| | ||||||||||  | |||||||| |||||||||| ||||||
Sbjct: 879 acttgccggggacga-agttggtggcgtaggcccatgcgttgttgttgacggggtc 825



to top

>dbj|AK060851.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E08, full
           insert sequence
          Length = 1235

 Score = 48.1 bits (24), Expect = 0.006
 Identities = 49/56 (87%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                   
Query: 58  acttgccggggacaagagttggtggcaaacgcccatgcattgttgttgatggggtc 113
           ||||||||||||| | ||||||||||  ||||||| || |||||||||| ||||||
Sbjct: 853 acttgccggggacga-agttggtggcgtacgcccaggcgttgttgttgacggggtc 799



to top

>dbj|AK058312.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-H12, full
           insert sequence
          Length = 1040

 Score = 48.1 bits (24), Expect = 0.006
 Identities = 49/56 (87%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                   
Query: 58  acttgccggggacaagagttggtggcaaacgcccatgcattgttgttgatggggtc 113
           ||||||||||||| | ||||||||||  | |||||||| |||||||||| ||||||
Sbjct: 862 acttgccggggacga-agttggtggcgtaggcccatgcgttgttgttgacggggtc 808



to top

>dbj|AK058305.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-H02, full
           insert sequence
          Length = 1045

 Score = 48.1 bits (24), Expect = 0.006
 Identities = 49/56 (87%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                   
Query: 58  acttgccggggacaagagttggtggcaaacgcccatgcattgttgttgatggggtc 113
           ||||||||||||| | ||||||||||  ||||||| || |||||||||| ||||||
Sbjct: 853 acttgccggggacga-agttggtggcgtacgcccaggcgttgttgttgacggggtc 799



to top

>dbj|AK058289.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-E06, full
           insert sequence
          Length = 1057

 Score = 48.1 bits (24), Expect = 0.006
 Identities = 49/56 (87%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                   
Query: 58  acttgccggggacaagagttggtggcaaacgcccatgcattgttgttgatggggtc 113
           ||||||||||||| | ||||||||||  | |||||||| |||||||||| ||||||
Sbjct: 879 acttgccggggacga-agttggtggcgtaggcccatgcgttgttgttgacggggtc 825



to top

>gb|M29334.1|LGILHCPABP L.gibba light-harvesting chlorophyll a/b protein gene, complete cds
          Length = 1633

 Score = 48.1 bits (24), Expect = 0.006
 Identities = 49/56 (87%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                    
Query: 58   acttgccggggacaagagttggtggcaaacgcccatgcattgttgttgatggggtc 113
            ||||||||||||| | |||||||||| || ||||| || |||||||||| ||||||
Sbjct: 1193 acttgccggggacga-agttggtggcgaaggcccaggcgttgttgttgacggggtc 1139



to top

>dbj|D00641.1|RICLHCP1 Oryza sativa (japonica cultivar-group) mRNA for type I
           light-harvesting chlorophyll a/b binding protein of
           photosystem II (LHCPII), complete cds
          Length = 1022

 Score = 48.1 bits (24), Expect = 0.006
 Identities = 49/56 (87%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                   
Query: 58  acttgccggggacaagagttggtggcaaacgcccatgcattgttgttgatggggtc 113
           ||||||||||||| | ||||||||||  ||||||| || |||||||||| ||||||
Sbjct: 834 acttgccggggacga-agttggtggcgtacgcccaggcgttgttgttgacggggtc 780



to top

>gb|AY430082.1| Trifolium pratense chlorophyll a/b binding protein mRNA, complete
           cds; nuclear gene for chloroplast product
          Length = 987

 Score = 46.1 bits (23), Expect = 0.022
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 74  agttggtggcaaacgcccatgcattgttgttgatggggtcagc 116
           ||||||||||||| ||||| || ||||||||||  ||||||||
Sbjct: 836 agttggtggcaaaagcccaggcgttgttgttgactgggtcagc 794



to top

>gb|AY288914.1| Brassica oleracea chlorophyll a/b binding protein mRNA, complete
           cds; nuclear gene for chloroplast product
          Length = 1042

 Score = 46.1 bits (23), Expect = 0.022
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 74  agttggtggcaaacgcccatgcattgttgtt 104
           ||||||| ||||| |||||||||||||||||
Sbjct: 859 agttggtagcaaaggcccatgcattgttgtt 829



to top

>gb|AF279250.1|AF279250 Vigna radiata LHCII type I chlorophyll a/b-binding protein
           (CipLhcb1*3) mRNA, complete cds; nuclear gene for
           chloroplast product
          Length = 941

 Score = 46.1 bits (23), Expect = 0.022
 Identities = 51/59 (86%), Gaps = 1/59 (1%)
 Strand = Plus / Minus

                                                                      
Query: 58  acttgccggggacaagagttggtggcaaacgcccatgcattgttgttgatggggtcagc 116
           |||| |||||||||| |||| |||||| | ||||| |||||||||||||  ||||||||
Sbjct: 848 actttccggggacaa-agtttgtggcatatgcccaagcattgttgttgacagggtcagc 791



to top

>emb|X02358.1|PECAB25 Petunia gene for chlorophyll a/b binding protein cab 25
          Length = 1184

 Score = 46.1 bits (23), Expect = 0.022
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                       
Query: 74   agttggtggcaaacgcccatgcattgttgttgatggggtcagc 116
            |||| |||||||| ||||| ||||||||||| | |||||||||
Sbjct: 1014 agtttgtggcaaaggcccacgcattgttgttaacggggtcagc 972



to top

>gb|K00976.1|PETCAB102 Petunia major chlorophyll a/b binding protein (Cab) clone pCab102,
           3' end and flank
          Length = 302

 Score = 46.1 bits (23), Expect = 0.022
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 74  agttggtggcaaacgcccatgcattgttgttgatggggtcagc 116
           |||| |||||||| ||||| ||||||||||| | |||||||||
Sbjct: 172 agtttgtggcaaaggcccacgcattgttgttaacggggtcagc 130



to top

>gb|AF003127.1|AF003127 Mesembryanthemum crystallinum chlorophyll a/b-binding protein (CAB)
           mRNA, nuclear gene encoding chloroplast protein,
           complete cds
          Length = 1042

 Score = 46.1 bits (23), Expect = 0.022
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 74  agttggtggcaaacgcccatgcattgttgttgatggggtcagc 116
           |||||||||| || ||||| |||||||||||||  ||||||||
Sbjct: 811 agttggtggcgaaggcccaagcattgttgttgactgggtcagc 769



to top

>emb|X02357.1|PECAB13 Petunia gene for chlorophyll a/b binding protein cab 13
          Length = 1019

 Score = 44.1 bits (22), Expect = 0.087
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 79  gtggcaaacgcccatgcattgttgttgatggggtcagc 116
           |||||||| ||||| ||||||||||| | |||||||||
Sbjct: 900 gtggcaaaggcccacgcattgttgttaacggggtcagc 863



to top

>ref|NM_128995.2| Arabidopsis thaliana LHB1B1; chlorophyll binding AT2G34430 (LHB1B1)
           mRNA, complete cds
          Length = 1008

 Score = 42.1 bits (21), Expect = 0.34
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 74  agttggtggcaaacgcccatgcattgttgttga 106
           ||||||| || || |||||||||||||||||||
Sbjct: 846 agttggtagcgaaggcccatgcattgttgttga 814



to top

>ref|NM_102732.2| Arabidopsis thaliana CAB2; chlorophyll binding AT1G29920 (CAB2)
           mRNA, complete cds
          Length = 1176

 Score = 42.1 bits (21), Expect = 0.34
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 74  agttggtggcaaacgcccatgcattgttgttga 106
           ||||||||||||| ||||| || ||||||||||
Sbjct: 854 agttggtggcaaaggcccaagcgttgttgttga 822



to top

>gb|BT015572.1| Arabidopsis thaliana At1g29910 mRNA sequence
          Length = 762

 Score = 42.1 bits (21), Expect = 0.34
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 74  agttggtggcaaacgcccatgcattgttgttga 106
           ||||||||||||| ||||| || ||||||||||
Sbjct: 745 agttggtggcaaaggcccaagcgttgttgttga 713



to top

>gb|BT000726.1| Arabidopsis thaliana clone RAFL06-67-G16 (R11472) putative
           photosystem II type I chlorophyll a /b binding protein
           (At1g29920) mRNA, complete cds
          Length = 1044

 Score = 42.1 bits (21), Expect = 0.34
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 74  agttggtggcaaacgcccatgcattgttgttga 106
           ||||||||||||| ||||| || ||||||||||
Sbjct: 840 agttggtggcaaaggcccaagcgttgttgttga 808



to top

>gb|AF339687.1| Arabidopsis thaliana putative photosystem II type I chlorophyll a/b
           binding protein (At2g34430) mRNA, complete cds
          Length = 851

 Score = 42.1 bits (21), Expect = 0.34
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 74  agttggtggcaaacgcccatgcattgttgttga 106
           ||||||| || || |||||||||||||||||||
Sbjct: 784 agttggtagcgaaggcccatgcattgttgttga 752



to top

>gb|AF326864.1| Arabidopsis thaliana putative photosystem II type I chlorophyll a/b
           binding protein (At2g34430) mRNA, complete cds
          Length = 1019

 Score = 42.1 bits (21), Expect = 0.34
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 74  agttggtggcaaacgcccatgcattgttgttga 106
           ||||||| || || |||||||||||||||||||
Sbjct: 846 agttggtagcgaaggcccatgcattgttgttga 814



to top

>gb|AY128345.1| Arabidopsis thaliana photosystem II type I chlorophyll a/b binding
           protein, putative (At1g29920) mRNA, complete cds
          Length = 994

 Score = 42.1 bits (21), Expect = 0.34
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 74  agttggtggcaaacgcccatgcattgttgttga 106
           ||||||||||||| ||||| || ||||||||||
Sbjct: 840 agttggtggcaaaggcccaagcgttgttgttga 808



to top

>gb|AY120776.1| Arabidopsis thaliana putative photosystem II type I chlorophyll a/b
           binding protein. (At2g34430) mRNA, complete cds
          Length = 1003

 Score = 42.1 bits (21), Expect = 0.34
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 74  agttggtggcaaacgcccatgcattgttgttga 106
           ||||||| || || |||||||||||||||||||
Sbjct: 846 agttggtagcgaaggcccatgcattgttgttga 814



to top

>gb|AC004481.3| Arabidopsis thaliana chromosome 2 clone F13P17 map ve016, complete
             sequence
          Length = 112763

 Score = 42.1 bits (21), Expect = 0.34
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 74    agttggtggcaaacgcccatgcattgttgttga 106
             ||||||| || || |||||||||||||||||||
Sbjct: 96088 agttggtagcgaaggcccatgcattgttgttga 96056



to top

>gb|AC004077.3| Arabidopsis thaliana chromosome 2 clone T31E10 map ve016, complete
             sequence
          Length = 93060

 Score = 42.1 bits (21), Expect = 0.34
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 74    agttggtggcaaacgcccatgcattgttgttga 106
             ||||||| || || |||||||||||||||||||
Sbjct: 78114 agttggtagcgaaggcccatgcattgttgttga 78146



to top

>gb|AY081572.1| Arabidopsis thaliana chlorophyll a/b-binding protein (At1g29920)
           mRNA, complete cds
          Length = 898

 Score = 42.1 bits (21), Expect = 0.34
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 74  agttggtggcaaacgcccatgcattgttgttga 106
           ||||||||||||| ||||| || ||||||||||
Sbjct: 787 agttggtggcaaaggcccaagcgttgttgttga 755



to top

>gb|AY062814.1| Arabidopsis thaliana chlorophyll a/b-binding protein (At1g29920;
           F1N18.4) mRNA, complete cds
          Length = 1007

 Score = 42.1 bits (21), Expect = 0.34
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 74  agttggtggcaaacgcccatgcattgttgttga 106
           ||||||||||||| ||||| || ||||||||||
Sbjct: 839 agttggtggcaaaggcccaagcgttgttgttga 807



to top

>gb|AY060500.1| Arabidopsis thaliana At1g29920/F1N18_80 mRNA, complete cds
          Length = 804

 Score = 42.1 bits (21), Expect = 0.34
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 74  agttggtggcaaacgcccatgcattgttgttga 106
           ||||||||||||| ||||| || ||||||||||
Sbjct: 787 agttggtggcaaaggcccaagcgttgttgttga 755



to top

>gb|AY054198.1| Arabidopsis thaliana At1g29920/F1N18_80 mRNA, complete cds
          Length = 1027

 Score = 42.1 bits (21), Expect = 0.34
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 74  agttggtggcaaacgcccatgcattgttgttga 106
           ||||||||||||| ||||| || ||||||||||
Sbjct: 833 agttggtggcaaaggcccaagcgttgttgttga 801



to top

>gb|AY052237.1| Arabidopsis thaliana At1g29920/F1N18_80 mRNA, complete cds
          Length = 1027

 Score = 42.1 bits (21), Expect = 0.34
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 74  agttggtggcaaacgcccatgcattgttgttga 106
           ||||||||||||| ||||| || ||||||||||
Sbjct: 839 agttggtggcaaaggcccaagcgttgttgttga 807



to top

>gb|AF324693.2|AF324693 Arabidopsis thaliana At2g34430 (At2g34430/T31E10.23) mRNA, complete
           cds
          Length = 1009

 Score = 42.1 bits (21), Expect = 0.34
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 74  agttggtggcaaacgcccatgcattgttgttga 106
           ||||||| || || |||||||||||||||||||
Sbjct: 852 agttggtagcgaaggcccatgcattgttgttga 820



to top

>emb|BX819881.1|CNS0AA6O Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS41ZH03 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 638

 Score = 42.1 bits (21), Expect = 0.34
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 74  agttggtggcaaacgcccatgcattgttgttga 106
           ||||||| || || |||||||||||||||||||
Sbjct: 504 agttggtagcgaaggcccatgcattgttgttga 472



to top

>gb|AF039598.1| Prunus persica light harvesting chlorophyll A/B binding protein
           (Lhcb-Pp2) mRNA, complete cds
          Length = 955

 Score = 42.1 bits (21), Expect = 0.34
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 74  agttggtggcaaacgcccatgcattgttg 102
           ||||||||||| | |||||||||||||||
Sbjct: 781 agttggtggcataagcccatgcattgttg 753



to top

>gb|AC008030.4|AC008030 Arabidopsis thaliana chromosome I BAC F1N18 genomic sequence, complete
             sequence
          Length = 101075

 Score = 42.1 bits (21), Expect = 0.34
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 74    agttggtggcaaacgcccatgcattgttgttga 106
             ||||||||||||| ||||| || ||||||||||
Sbjct: 19879 agttggtggcaaaggcccaagcgttgttgttga 19847



to top

>gb|AY086905.1| Arabidopsis thaliana clone 29298 mRNA, complete sequence
          Length = 1041

 Score = 42.1 bits (21), Expect = 0.34
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 74  agttggtggcaaacgcccatgcattgttgttga 106
           ||||||||||||| ||||| || ||||||||||
Sbjct: 854 agttggtggcaaaggcccaagcgttgttgttga 822



to top

>gb|AY086307.1| Arabidopsis thaliana clone 23727 mRNA, complete sequence
          Length = 979

 Score = 42.1 bits (21), Expect = 0.34
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 74  agttggtggcaaacgcccatgcattgttgttga 106
           ||||||| || || |||||||||||||||||||
Sbjct: 846 agttggtagcgaaggcccatgcattgttgttga 814



to top

>gb|AF220527.1|AF220527 Euphorbia esula chlorophyll a/b binding protein precursor, mRNA,
           complete cds
          Length = 927

 Score = 42.1 bits (21), Expect = 0.34
 Identities = 43/49 (87%), Gaps = 1/49 (2%)
 Strand = Plus / Minus

                                                            
Query: 56  ttacttgccggggacaagagttggtggcaaacgcccatgcattgttgtt 104
           |||||| |||||||| | ||||||| ||||| ||||| |||||||||||
Sbjct: 807 ttactttccggggacga-agttggtcgcaaaagcccaagcattgttgtt 760



to top

>emb|X64459.1|ATLHB1B1 A.thaliana Lhb1B1 gene for photosystem II type I chlorophyll a/b
            binding protein
          Length = 1301

 Score = 42.1 bits (21), Expect = 0.34
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 74   agttggtggcaaacgcccatgcattgttgttga 106
            ||||||| || || |||||||||||||||||||
Sbjct: 1084 agttggtagcgaaggcccatgcattgttgttga 1052



to top

>emb|X03907.1|ATLHCP1 A.thaliana gene (LHCP AB 165) for chlorophyll a/b binding protein
          Length = 999

 Score = 42.1 bits (21), Expect = 0.34
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 74  agttggtggcaaacgcccatgcattgttgttga 106
           ||||||||||||| ||||| || ||||||||||
Sbjct: 932 agttggtggcaaaggcccaagcgttgttgttga 900



to top

>gb|BT002103.1| Arabidopsis thaliana putative photosystem II type I chlorophyll a/b
           binding protein. (At2g34430) mRNA, complete cds
          Length = 853

 Score = 42.1 bits (21), Expect = 0.34
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 74  agttggtggcaaacgcccatgcattgttgttga 106
           ||||||| || || |||||||||||||||||||
Sbjct: 784 agttggtagcgaaggcccatgcattgttgttga 752



to top

>gb|AF072931.1|AF072931 Medicago sativa chlorophyll a/b binding protein (CARCAB1) mRNA,
           complete cds
          Length = 983

 Score = 42.1 bits (21), Expect = 0.34
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 74  agttggtggcaaacgcccatgcattgttgttga 106
           ||||||||||| | |||||||| ||||||||||
Sbjct: 835 agttggtggcataggcccatgcgttgttgttga 803



to top

>gb|U39475.1|GMU39475 Glycine max chlorophyll a/b-binding protein (cab3) mRNA, nuclear
           gene encoding chloroplast protein, complete cds
          Length = 977

 Score = 42.1 bits (21), Expect = 0.34
 Identities = 43/49 (87%), Gaps = 1/49 (2%)
 Strand = Plus / Minus

                                                            
Query: 58  acttgccggggacaagagttggtggcaaacgcccatgcattgttgttga 106
           ||||||||||||| | ||||||||||  | ||||| |||||||||||||
Sbjct: 821 acttgccggggacga-agttggtggcgtaggcccaggcattgttgttga 774



to top

>gb|M64619.1|PEACAB66 Pea cab gene, complete cds
          Length = 1666

 Score = 42.1 bits (21), Expect = 0.34
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 74   agttggtggcaaacgcccatgcattgttgttga 106
            ||||||||||| | | |||||||||||||||||
Sbjct: 1502 agttggtggcatatgaccatgcattgttgttga 1470



to top

>gb|K02067.1|PEACAB80 Pea (P.sativum) gene AB80 encoding major light-harvesting chlorophyll
            a/b-binding protein (polypeptide 15) complex precursor,
            complete coding sequence
          Length = 1993

 Score = 42.1 bits (21), Expect = 0.34
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 74   agttggtggcaaacgcccatgcattgttgttga 106
            ||||||||||| | | |||||||||||||||||
Sbjct: 1803 agttggtggcatatgaccatgcattgttgttga 1771



to top

>ref|NM_192636.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 789

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 48/56 (85%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                   
Query: 58  acttgccggggacaagagttggtggcaaacgcccatgcattgttgttgatggggtc 113
           ||||||||||||| | ||||||||||  | ||||| || |||||||||| ||||||
Sbjct: 784 acttgccggggacga-agttggtggcgtaggcccaggcgttgttgttgacggggtc 730



to top

>emb|X53398.1|ZMCABM7 Z.mays cab-m7 gene for light harvesting chlorophyll a/b binding
            protein
          Length = 2261

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 48/56 (85%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                    
Query: 58   acttgccggggacaagagttggtggcaaacgcccatgcattgttgttgatggggtc 113
            ||||||||||||| | ||||||||||  | ||||| || |||||||||| ||||||
Sbjct: 1808 acttgccggggacga-agttggtggcgtaggcccaagcgttgttgttgacggggtc 1754



to top

>ref|XM_532229.2| PREDICTED: Canis familiaris similar to 35 kDa SR repressor protein
            (SRrp35) (LOC474992), mRNA
          Length = 1064

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 31   aaataaaaattcttcaaggc 50
            ||||||||||||||||||||
Sbjct: 1042 aaataaaaattcttcaaggc 1061



to top

>emb|X13908.1|OSCABR1 Rice cab1R gene for light harvesting chlorophyll a/b-binding protein
          Length = 1664

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 48/56 (85%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                    
Query: 58   acttgccggggacaagagttggtggcaaacgcccatgcattgttgttgatggggtc 113
            ||||||||||||| | ||||||||||  | ||||| || |||||||||| ||||||
Sbjct: 1245 acttgccggggacga-agttggtggcgtaggcccaggcgttgttgttgacggggtc 1191



to top

>emb|CR717240.1|PCC21H1 P. carinii cosmid 21H1
          Length = 25824

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 24    aatcttcaaataaaaattcttcaaggca 51
             |||||||||||||||  |||||||||||
Sbjct: 23356 aatcttcaaataaaatatcttcaaggca 23383



to top

>emb|AL080316.8|HSJ104O17 Human DNA sequence from clone RP1-104O17 on chromosome 6q16.1-16.3
             Contains parts of 3 novel genes, complete sequence
          Length = 105137

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 29    tcaaataaaaattcttcaag 48
             ||||||||||||||||||||
Sbjct: 25806 tcaaataaaaattcttcaag 25787



to top

>dbj|AP003278.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0518F01
          Length = 154541

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 48/56 (85%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                     
Query: 58    acttgccggggacaagagttggtggcaaacgcccatgcattgttgttgatggggtc 113
             ||||||||||||| | ||||||||||  | ||||| || |||||||||| ||||||
Sbjct: 67026 acttgccggggacga-agttggtggcgtaggcccaggcgttgttgttgacggggtc 66972



to top

>emb|X63205.1|ZMCAB48 Zea mays cab48 gene for chlorophyll a/b binding protein precursor
          Length = 2780

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 48/56 (85%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                    
Query: 58   acttgccggggacaagagttggtggcaaacgcccatgcattgttgttgatggggtc 113
            ||||||||||||| | ||||||||||  | ||||| || |||||||||| ||||||
Sbjct: 2719 acttgccggggacga-agttggtggcgtaagcccaggcgttgttgttgacggggtc 2665



to top

>dbj|AK121563.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034J10, full
           insert sequence
          Length = 1180

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 48/56 (85%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                   
Query: 58  acttgccggggacaagagttggtggcaaacgcccatgcattgttgttgatggggtc 113
           ||||||||||||| | ||||||||||  | ||||| || |||||||||| ||||||
Sbjct: 855 acttgccggggacga-agttggtggcgtaggcccaggcgttgttgttgacggggtc 801



to top

>dbj|AK119173.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-B06, full
           insert sequence
          Length = 1126

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 48/56 (85%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                   
Query: 58  acttgccggggacaagagttggtggcaaacgcccatgcattgttgttgatggggtc 113
           ||||||||||||| | ||||||||||  | ||||| || |||||||||| ||||||
Sbjct: 854 acttgccggggacga-agttggtggcgtaggcccaggcgttgttgttgacggggtc 800



to top

>emb|Y00379.1|ZMLHCP Maize mRNA for light-harvesting chlorophyll a/b binding protein
           LHCP
          Length = 967

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 48/56 (85%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                   
Query: 58  acttgccggggacaagagttggtggcaaacgcccatgcattgttgttgatggggtc 113
           ||||||||||||| | ||||||||||  | ||||| || |||||||||| ||||||
Sbjct: 860 acttgccggggacga-agttggtggcgtaggcccaagcgttgttgttgacggggtc 806



to top

>emb|Y13865.1|BVCHLOROP Beta vulgaris mRNA for chlorophyll a/b-binding protein
          Length = 1036

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 74  agttggtggcaaacgcccatgcattgtt 101
           ||||||||||||| ||||| ||||||||
Sbjct: 856 agttggtggcaaaggcccaggcattgtt 829



to top

>emb|X13909.1|OSCABR2 Rice cab2R gene for light harvesting chlorophyll a/b-binding protein
          Length = 1442

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 48/56 (85%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                    
Query: 58   acttgccggggacaagagttggtggcaaacgcccatgcattgttgttgatggggtc 113
            ||||||||||||| | ||||||||||  | ||||| || |||||||||| ||||||
Sbjct: 1284 acttgccggggacga-agttggtggcgtaggcccaggcgttgttgttgacggggtc 1230



to top

>dbj|AK061619.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-E02, full
           insert sequence
          Length = 650

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 48/56 (85%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                   
Query: 58  acttgccggggacaagagttggtggcaaacgcccatgcattgttgttgatggggtc 113
           ||||||||||||| | ||||||||||  | ||||| || |||||||||| ||||||
Sbjct: 384 acttgccggggacga-agttggtggcgtaggcccaggcgttgttgttgacggggtc 330



to top

>gb|AY109324.1| Zea mays CL187_1 mRNA sequence
          Length = 2262

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 48/56 (85%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                    
Query: 58   acttgccggggacaagagttggtggcaaacgcccatgcattgttgttgatggggtc 113
            ||||||||||||| | ||||||||||  | ||||| || |||||||||| ||||||
Sbjct: 1808 acttgccggggacga-agttggtggcgtaggcccaagcgttgttgttgacggggtc 1754



to top

>gb|AY845253.1| Pisum sativum light-harvesting chlorophyll-a/b binding protein
           Lhcb1 mRNA, complete cds
          Length = 801

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                          
Query: 74  agttggtggcaaacgcccatgcattgttgtt 104
           ||||||||||| | | |||||||||||||||
Sbjct: 784 agttggtggcatatgaccatgcattgttgtt 754



to top

>gb|AC120420.11| Mus musculus chromosome 5, clone RP24-481P22, complete sequence
          Length = 213649

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 25     atcttcaaataaaaattcttcaa 47
              |||| ||||||||||||||||||
Sbjct: 134832 atctgcaaataaaaattcttcaa 134810



to top

>ref|XM_642065.1| Dictyostelium discoideum hypothetical protein (DDB0189398), partial
            mRNA
          Length = 5424

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 29   tcaaataaaaattcttcaa 47
            |||||||||||||||||||
Sbjct: 5380 tcaaataaaaattcttcaa 5398



to top

>ref|XM_633941.1| Dictyostelium discoideum WD-40 repeat-containing protein
            (DDB0229872), partial mRNA
          Length = 2757

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 29   tcaaataaaaattcttcaa 47
            |||||||||||||||||||
Sbjct: 1489 tcaaataaaaattcttcaa 1507



to top

>gb|AC125346.4| Mus musculus BAC clone RP24-87B17 from chromosome 5, complete sequence
          Length = 187912

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 25    atcttcaaataaaaattcttcaa 47
             |||| ||||||||||||||||||
Sbjct: 58561 atctgcaaataaaaattcttcaa 58583



to top

>gb|BT014208.1| Lycopersicon esculentum clone 133385R, mRNA sequence
          Length = 958

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 44/51 (86%), Gaps = 1/51 (1%)
 Strand = Plus / Minus

                                                              
Query: 63  ccggggacaagagttggtggcaaacgcccatgcattgttgttgatggggtc 113
           |||||||||| |||| ||||| || ||||| ||||||||||| | ||||||
Sbjct: 835 ccggggacaa-agtttgtggcgaaagcccaggcattgttgtttacggggtc 786



to top

>emb|AL354995.13| Human DNA sequence from clone RP11-512J14 on chromosome 13 Contains
            the 3' end of the DACH gene for dachshund homolog
            (Drosophila) (DACH1, FLJ10138), complete sequence
          Length = 149582

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 90   ccatgcattgttgttgatg 108
            |||||||||||||||||||
Sbjct: 2483 ccatgcattgttgttgatg 2465



to top

>gb|AC116546.1| Homo sapiens 3 BAC RP11-312H1 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 160421

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 69     acaagagttggtggcaaac 87
              |||||||||||||||||||
Sbjct: 116482 acaagagttggtggcaaac 116464



to top

>emb|BX088585.4| Mouse DNA sequence from clone RP23-185A14 on chromosome 4, complete
            sequence
          Length = 43212

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 25   atcttcaaataaaaattcttcaa 47
            |||| ||||||||||||||||||
Sbjct: 5511 atctgcaaataaaaattcttcaa 5533



to top

>gb|AC106881.9| Homo sapiens BAC clone RP11-710C12 from 4, complete sequence
          Length = 150889

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 24    aatcttcaaataaaaattc 42
             |||||||||||||||||||
Sbjct: 78714 aatcttcaaataaaaattc 78732



to top

>dbj|AK044414.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library,
            clone:A930011G23 product:hypothetical protein, full
            insert sequence
          Length = 2525

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 30   caaataaaaattcttcaag 48
            |||||||||||||||||||
Sbjct: 1442 caaataaaaattcttcaag 1460



to top

>gb|AC114625.11| Mus musculus chromosome 3, clone RP24-107N14, complete sequence
          Length = 160025

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 22    acaatcttcaaataaaaattctt 44
             |||||||| ||||||||||||||
Sbjct: 66282 acaatctttaaataaaaattctt 66260



to top

>gb|AY660566.1| Huperzia lucidula chloroplast, complete genome
          Length = 154373

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 26     tcttcaaataaaaattctt 44
              |||||||||||||||||||
Sbjct: 124803 tcttcaaataaaaattctt 124821



to top

>emb|BX470163.8| Zebrafish DNA sequence from clone DKEY-27A9 in linkage group 18, complete
              sequence
          Length = 241301

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 22     acaatcttcaaataaaaattctt 44
              |||||||||||| ||||||||||
Sbjct: 186577 acaatcttcaaaaaaaaattctt 186599



to top

>emb|X56538.1|PSCABIIC P.sativum Cab-8 gene for photosystemm II chlorophyll a/b binding
            protein
          Length = 2236

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                           
Query: 74   agttggtggcaaacgcccatgcattgttgtt 104
            ||||||||||| | | |||||||||||||||
Sbjct: 2100 agttggtggcatatgaccatgcattgttgtt 2070



to top

>emb|Z75663.1|AGCHLABBP A.graveolens mRNA for chlorophyll a/b binding protein
          Length = 963

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                          
Query: 74  agttggtggcaaacgcccatgcattgttgtt 104
           |||| |||||||| ||||| |||||||||||
Sbjct: 820 agttagtggcaaaggcccaggcattgttgtt 790



to top

>emb|X16535.1|GMCAB4 G.max DNA for Cab4
          Length = 1470

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 41/47 (87%), Gaps = 1/47 (2%)
 Strand = Plus / Minus

                                                           
Query: 58   acttgccggggacaagagttggtggcaaacgcccatgcattgttgtt 104
            |||| |||||||||| |||| |||||| | ||||| |||||||||||
Sbjct: 1123 actttccggggacaa-agtttgtggcataggcccaagcattgttgtt 1078



to top

>emb|BX784024.10| Zebrafish DNA sequence from clone CH211-239J19 in linkage group 18,
             complete sequence
          Length = 110791

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 22    acaatcttcaaataaaaattctt 44
             |||||||||||| ||||||||||
Sbjct: 42228 acaatcttcaaaaaaaaattctt 42206



to top

>gb|AC159739.3| Mus musculus BAC clone RP23-442O9 from chromosome 9, complete sequence
          Length = 207308

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 22    acaatcttcaaataaaaat 40
             |||||||||||||||||||
Sbjct: 67651 acaatcttcaaataaaaat 67669



to top

>gb|AC132257.5| Mus musculus BAC clone RP24-361A4 from 5, complete sequence
          Length = 171729

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 30    caaataaaaattcttcaag 48
             |||||||||||||||||||
Sbjct: 81493 caaataaaaattcttcaag 81511



to top

>gb|AC126450.4| Mus musculus BAC clone RP23-379J7 from 3, complete sequence
          Length = 159914

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 75     gttggtggcaaacgcccat 93
              |||||||||||||||||||
Sbjct: 127196 gttggtggcaaacgcccat 127178



to top

>dbj|AP004473.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT10J15, TM0007,
             complete sequence
          Length = 92741

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                            
Query: 74    agttggtggcaaacgcccatgcattgttgtt 104
             ||||||||||| | ||||| |||||||||||
Sbjct: 65576 agttggtggcataggcccaggcattgttgtt 65606



to top

>emb|X14341.1|SOCABP S.oleracea chloroplast mRNA for chlorophyll a/b binding protein
          Length = 980

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 41/47 (87%), Gaps = 1/47 (2%)
 Strand = Plus / Minus

                                                          
Query: 58  acttgccggggacaagagttggtggcaaacgcccatgcattgttgtt 104
           |||| |||||||||| |||||||||||||   ||| |||||||||||
Sbjct: 851 actttccggggacaa-agttggtggcaaagttccaagcattgttgtt 806



to top

>gb|U01964.1|GMU01964 Glycine max cv. Dare photosystem II type I chlorophyll a/b-binding
            protein (lhcb1*7) gene, complete cds
          Length = 1882

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 37/43 (86%)
 Strand = Plus / Minus

                                                       
Query: 74   agttggtggcaaacgcccatgcattgttgttgatggggtcagc 116
            |||| |||||| | ||||| |||||||||||||  ||||||||
Sbjct: 1535 agtttgtggcataagcccaagcattgttgttgactgggtcagc 1493



to top

>gb|M14443.1|TOMCBPA Tomato chlorophyll a/b-binding protein gene Cab-1B, complete cds
          Length = 1253

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 44/51 (86%), Gaps = 1/51 (1%)
 Strand = Plus / Minus

                                                              
Query: 63  ccggggacaagagttggtggcaaacgcccatgcattgttgttgatggggtc 113
           |||||||||| |||| ||||| || ||||| ||||||||||| | ||||||
Sbjct: 981 ccggggacaa-agtttgtggcgaaagcccaggcattgttgtttacggggtc 932



to top

>gb|M86906.1|PEACHLROPH Pea (subclone AB9) Cab9 gene, 3' end
          Length = 1919

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                          
Query: 74  agttggtggcaaacgcccatgcattgttgtt 104
           |||| |||||| | |||||||||||||||||
Sbjct: 568 agtttgtggcatatgcccatgcattgttgtt 538



to top

>gb|M16058.1|CUSLHCPB Cucumber LHCP mRNA encoding chlorophyll a/b-binding protein,
           partial cds
          Length = 748

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 37/43 (86%)
 Strand = Plus / Minus

                                                      
Query: 74  agttggtggcaaacgcccatgcattgttgttgatggggtcagc 116
           |||| |||||| | ||||| |||||||||||||  ||||||||
Sbjct: 606 agtttgtggcatatgcccaagcattgttgttgactgggtcagc 564


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,270,565
Number of Sequences: 3902068
Number of extensions: 1270565
Number of successful extensions: 94481
Number of sequences better than 10.0: 109
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 94358
Number of HSP's gapped (non-prelim): 219
length of query: 117
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 96
effective length of database: 17,151,101,840
effective search space: 1646505776640
effective search space used: 1646505776640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top