>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)|
            (High molecular weight salivary mucin MG1) (Sublingual
            gland mucin)
          Length = 5703

 Score = 36.6 bits (83), Expect = 0.081
 Identities = 21/59 (35%), Positives = 29/59 (49%)
 Frame = -2

Query: 724  PSSSENAAGFVPSVNVLAPEVIPEPSATTPAEVPTSLLTSIPVDLTVAATAPVDVASAL 548
            PSSS   +G  PS+   A  +    S T P+  P +  T IP +LT  AT P   +S +
Sbjct: 3876 PSSSTQTSGTPPSLITTATTITATGSTTNPSSTPGT--TPIPPELTTTATTPAATSSTV 3932



 Score = 35.8 bits (81), Expect = 0.14
 Identities = 21/59 (35%), Positives = 28/59 (47%)
 Frame = -2

Query: 724  PSSSENAAGFVPSVNVLAPEVIPEPSATTPAEVPTSLLTSIPVDLTVAATAPVDVASAL 548
            PSSS   +G  PS+   A  +    S T P+  P +  T IP  LT  AT P   +S +
Sbjct: 3347 PSSSTQTSGTPPSLTTTATTITATGSTTNPSSTPGT--TPIPPVLTTTATTPAATSSTV 3403



 Score = 35.8 bits (81), Expect = 0.14
 Identities = 21/59 (35%), Positives = 28/59 (47%)
 Frame = -2

Query: 724  PSSSENAAGFVPSVNVLAPEVIPEPSATTPAEVPTSLLTSIPVDLTVAATAPVDVASAL 548
            PSSS   +G  PS+   A  +    S T P+  P +  T IP  LT  AT P   +S +
Sbjct: 2120 PSSSTQTSGTPPSLTTTATTITATGSTTNPSSTPGT--TPIPPVLTTTATTPAATSSTV 2176



 Score = 34.3 bits (77), Expect = 0.40
 Identities = 21/57 (36%), Positives = 27/57 (47%)
 Frame = -2

Query: 724  PSSSENAAGFVPSVNVLAPEVIPEPSATTPAEVPTSLLTSIPVDLTVAATAPVDVAS 554
            PSSS   +G  PS+   A  +    S T P+  P +  T IP  LT  AT P   +S
Sbjct: 4608 PSSSTQTSGTPPSLTTTATTITATGSTTNPSSTPGT--TPIPPVLTSMATTPAATSS 4662



 Score = 33.5 bits (75), Expect = 0.68
 Identities = 20/59 (33%), Positives = 27/59 (45%)
 Frame = -2

Query: 724  PSSSENAAGFVPSVNVLAPEVIPEPSATTPAEVPTSLLTSIPVDLTVAATAPVDVASAL 548
            PSSS   +G  PS+   A  +    S T P+  P +    IP  LT  AT P   +S +
Sbjct: 2649 PSSSTQTSGTPPSLTTTATTITATGSTTNPSSTPGT--RPIPPVLTTTATTPAATSSTV 2705

>NBR1_PONPY (Q5RC94) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1|
           protein)
          Length = 894

 Score = 34.3 bits (77), Expect = 0.40
 Identities = 17/41 (41%), Positives = 25/41 (60%)
 Frame = -2

Query: 391 LLAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIAREKKD 269
           L+A L EMGF DR+ N +LL K+  +I + V +L+     D
Sbjct: 848 LMAHLFEMGFCDRQLNLQLLKKHNYNILQVVTELLQLNNND 888

>DSK2_SCHPO (Q10169) Deubiquitination-protection protein dph1|
          Length = 354

 Score = 33.9 bits (76), Expect = 0.52
 Identities = 14/35 (40%), Positives = 26/35 (74%)
 Frame = -2

Query: 388 LAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIA 284
           L++L+EMGF D E N + L ++GG+++ A+  L++
Sbjct: 318 LSQLNEMGFVDFERNVQALRRSGGNVQGAIESLLS 352

>UBQL2_MOUSE (Q9QZM0) Ubiquilin-2 (Protein linking IAP with cytoskeleton 2)|
           (PLIC-2) (Ubiquitin-like product Chap1/Dsk2) (DSK2
           homolog) (Chap1)
          Length = 638

 Score = 33.9 bits (76), Expect = 0.52
 Identities = 33/131 (25%), Positives = 49/131 (37%), Gaps = 9/131 (6%)
 Frame = -2

Query: 643 TTPAEVPTSLLTSIPVDLTVAATAPVDVASALLDIDRXXXXXXXXXXXEMGFKQVDLNKE 464
           T PA  P S  T IP   TV+++AP +  S   +                          
Sbjct: 533 TGPASSPGSTGTGIPPATTVSSSAPTETISPTSESG------------------------ 568

Query: 463 ILRQNKYNLEQSVDDLCGVNEWDP---------LLAELSEMGFDDRETNKELLAKNGGSI 311
               N+  ++Q V  L G +   P          L +L+ MGF +RE N + L   GG I
Sbjct: 569 ---PNQQFIQQMVQALTGGSPPQPPNPEVRFQQQLEQLNAMGFLNREANLQALIATGGDI 625

Query: 310 KRAVMDLIARE 278
             A+  L+  +
Sbjct: 626 NAAIERLLGSQ 636

>NBR1_RAT (Q501R9) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1|
            protein)
          Length = 983

 Score = 33.5 bits (75), Expect = 0.68
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = -2

Query: 391  LLAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIAREKKD 269
            L+A L EMGF DR+ N  LL K+  +I + V +L+     D
Sbjct: 937  LMAHLFEMGFCDRQLNLRLLRKHNHNILQVVTELLQVNNND 977

>NBR1_HUMAN (Q14596) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1|
            protein) (Membrane component, chromosome 17, surface
            marker 2) (1A1-3B)
          Length = 966

 Score = 33.5 bits (75), Expect = 0.68
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = -2

Query: 391  LLAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIAREKKD 269
            L+A L EMGF DR+ N  LL K+  +I + V +L+     D
Sbjct: 920  LMARLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQLNNND 960

>UBQL1_RAT (Q9JJP9) Ubiquilin-1 (Protein linking IAP with cytoskeleton 1)|
           (PLIC-1)
          Length = 582

 Score = 33.1 bits (74), Expect = 0.89
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
 Frame = -2

Query: 439 LEQSVDDLCGVN--------EWDPLLAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIA 284
           ++Q +  L GVN         +   L +LS MGF +RE N + L   GG I  A+  L+ 
Sbjct: 519 IQQMLQALAGVNPQLQSPEVRFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLG 578

Query: 283 RE 278
            +
Sbjct: 579 SQ 580

>UBQL1_MOUSE (Q8R317) Ubiquilin-1 (Protein linking IAP with cytoskeleton 1)|
           (PLIC-1)
          Length = 582

 Score = 33.1 bits (74), Expect = 0.89
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
 Frame = -2

Query: 439 LEQSVDDLCGVN--------EWDPLLAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIA 284
           ++Q +  L GVN         +   L +LS MGF +RE N + L   GG I  A+  L+ 
Sbjct: 519 IQQMLQALAGVNPQLQSPEVRFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLG 578

Query: 283 RE 278
            +
Sbjct: 579 SQ 580

>UBQL4_HUMAN (Q9NRR5) Ubiquilin-4 (Ataxin-1 ubiquitin-like-interacting protein|
           A1U)
          Length = 601

 Score = 33.1 bits (74), Expect = 0.89
 Identities = 36/143 (25%), Positives = 52/143 (36%)
 Frame = -2

Query: 706 AAGFVPSVNVLAPEVIPEPSATTPAEVPTSLLTSIPVDLTVAATAPVDVASALLDIDRXX 527
           A G VPS+        P PSA + A       TS P   T A ++P   +SA   + +  
Sbjct: 483 APGLVPSLGSFGISRTPAPSAGSNAGSTPEAPTSSPA--TPATSSPTGASSAQQQLMQQM 540

Query: 526 XXXXXXXXXEMGFKQVDLNKEILRQNKYNLEQSVDDLCGVNEWDPLLAELSEMGFDDRET 347
                      G  QV   +   +Q                     L +L+ MGF +RE 
Sbjct: 541 IQLLAGS----GNSQVQTPEVRFQQQ--------------------LEQLNSMGFINREA 576

Query: 346 NKELLAKNGGSIKRAVMDLIARE 278
           N + L   GG I  A+  L+  +
Sbjct: 577 NLQALIATGGDINAAIERLLGSQ 599

>UBQL1_HUMAN (Q9UMX0) Ubiquilin-1 (Protein linking IAP with cytoskeleton 1)|
           (PLIC-1) (hPLIC-1)
          Length = 589

 Score = 33.1 bits (74), Expect = 0.89
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
 Frame = -2

Query: 439 LEQSVDDLCGVN--------EWDPLLAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIA 284
           ++Q +  L GVN         +   L +LS MGF +RE N + L   GG I  A+  L+ 
Sbjct: 526 IQQMLQALAGVNPQLQNPEVRFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLG 585

Query: 283 RE 278
            +
Sbjct: 586 SQ 587

>NBR1_MOUSE (P97432) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1|
            protein) (Membrane component, chromosome 17, surface
            marker 2)
          Length = 988

 Score = 33.1 bits (74), Expect = 0.89
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = -2

Query: 391  LLAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIAREKKD 269
            L+A L EMGF DR+ N  LL K+  +I + V +L+     D
Sbjct: 942  LMAHLFEMGFCDRQLNLRLLRKHNYNILQVVTELLQVNNND 982



 Score = 29.6 bits (65), Expect = 9.9
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -2

Query: 496  MGFKQVDLNKEILRQNKYNLEQSVDDLCGVNEWD 395
            MGF    LN  +LR++ YN+ Q V +L  VN  D
Sbjct: 949  MGFCDRQLNLRLLRKHNYNILQVVTELLQVNNND 982

>BORG5_MOUSE (Q91W92) Cdc42 effector protein 1 (Binder of Rho GTPases 5)|
          Length = 409

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -2

Query: 694 VPSVNVLAPEVIPEPSATTPAEVPTSL--LTSIPVDLTVAATAPVDVAS 554
           VP+ N  AP   P P+A  PA   T+L  +TS+P     +  AP   +S
Sbjct: 241 VPTANPPAPAANPAPTAKPPAHAITTLDAVTSLPASAVTSLPAPAAASS 289

>UBQL2_HUMAN (Q9UHD9) Ubiquilin-2 (Protein linking IAP with cytoskeleton 2)|
           (PLIC-2) (hPLIC-2) (Ubiquitin-like product Chap1/Dsk2)
           (DSK2 homolog) (Chap1)
          Length = 624

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
 Frame = -2

Query: 451 NKYNLEQSVDDLCGVN---------EWDPLLAELSEMGFDDRETNKELLAKNGGSIKRAV 299
           N+  ++Q V  L G N          +   L +L+ MGF +RE N + L   GG I  A+
Sbjct: 556 NQQFIQQMVQALAGANAPQLPNPEVRFQQQLEQLNAMGFLNREANLQALIATGGDINAAI 615

Query: 298 MDLIARE 278
             L+  +
Sbjct: 616 ERLLGSQ 622

>ZN161_HUMAN (Q14119) Zinc finger protein 161 (Putative transcription factor|
           DB1)
          Length = 516

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -2

Query: 688 SVNVLAPEVIPEP-SATTPAEVPTSLLTSIPVDLTVAATAPVDVA 557
           +VN+ +P  I  P + T+P  + + L  + PV+L    TAPV++A
Sbjct: 428 AVNITSPMNIGHPVTITSPLSMTSPLTLTTPVNLPTPVTAPVNIA 472

>CPN_DROME (Q02910) Calphotin|
          Length = 864

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -2

Query: 724 PSSSENAAGFVPSVNVLAPEVI--PEPSATTPAEVPTSLLTSIPVDLTVAATAPV 566
           P+ +  AA  V  V  +AP V+  P P A +P   P   +  IPV ++     PV
Sbjct: 65  PAPAPIAAASVAPVASVAPPVVAAPTPPAASPVSTPPVAVAQIPVAVSAPVAPPV 119



 Score = 31.2 bits (69), Expect = 3.4
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
 Frame = -2

Query: 724 PSSSENAAGFVPS-----VNVLAPEVIPE----PSATTPAEVPTSLLTSIPVDLTVAATA 572
           P S+  AA   PS     V V++P  +      P A TP   P +L +  P  +T+ A A
Sbjct: 9   PVSAPVAAPVTPSAVAAPVQVVSPAAVAPAPAAPIAVTPVAPPPTLASVQPATVTIPAPA 68

Query: 571 PVDVAS 554
           P+  AS
Sbjct: 69  PIAAAS 74

>UBL7_MOUSE (Q91W67) Ubiquitin-like protein 7 (Ubiquitin-like protein SB132)|
          Length = 380

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 406 NEWDPLLAELSEMGFDDRETNKELLAKNGGSIKRAV 299
           ++W P L +L +MG  D E +   L   GG I+ A+
Sbjct: 336 SQWQPQLQQLRDMGIQDDELSLRALQATGGDIQAAL 371

>UBL7_HUMAN (Q96S82) Ubiquitin-like protein 7 (Ubiquitin-like protein SB132)|
           (Bone marrow stromal cell ubiquitin-like protein)
           (BMSC-UbP)
          Length = 380

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 406 NEWDPLLAELSEMGFDDRETNKELLAKNGGSIKRAV 299
           ++W P L +L +MG  D E +   L   GG I+ A+
Sbjct: 336 SQWQPQLQQLRDMGIQDDELSLRALQATGGDIQAAL 371

>MT1_CANGA (P15113) Metallothionein-1 (MT-1) (Metallothionein-I) (MT-I)|
          Length = 62

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -1

Query: 710 KCSWFCAKC*CTCTGSHSGTFCDYTR*SAHKFAY*YPCGSD-RSCNRTCGCG 558
           KC   C+   C   G   G  C+  + S H       CGS   SC+ +CGCG
Sbjct: 5   KCPNGCSCPNCANGGCQCGDKCECKKQSCHGCGEQCKCGSHGSSCHGSCGCG 56

>GTS1_YEAST (P40956) Protein GTS1 (Protein LSR1)|
          Length = 396

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -2

Query: 388 LAELSEMGFDDRETNKELLAKNGGSIKRAV 299
           LAEL +MGF D   N + L+   G+I RA+
Sbjct: 199 LAELKDMGFGDTNKNLDALSSAHGNINRAI 228

>FOXJ3_MOUSE (Q8BUR3) Forkhead box protein J3|
          Length = 623

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 66  EQLSRLQQPHAADPPRSQHNKVHTAHRSHT 155
           +Q S+LQ PH+  PP  QH + H  H+  T
Sbjct: 406 QQHSQLQPPHSQHPPPHQHIQHHPNHQHQT 435

>UN13B_HUMAN (O14795) Unc-13 homolog B (Munc13-2) (munc13)|
          Length = 1591

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 60  GTEQLSRLQQPHAADPPRSQHNKVHTAHRSHT 155
           G+ QLS L Q H  D    + + +H+ H SH+
Sbjct: 270 GSSQLSELDQYHEQDDDHRETDSIHSCHSSHS 301

>UBQL4_MOUSE (Q99NB8) Ubiquilin-4 (Ataxin-1 ubiquitin-like-interacting protein|
           A1U)
          Length = 596

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 388 LAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIARE 278
           L +L+ MGF +RE N + L   GG I  A+  L+  +
Sbjct: 558 LEQLNSMGFINREANLQALIATGGDINAAIERLLGSQ 594

>SYM_STRR6 (P67581) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA|
           ligase) (MetRS)
          Length = 665

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 24/68 (35%), Positives = 34/68 (50%)
 Frame = -2

Query: 475 LNKEILRQNKYNLEQSVDDLCGVNEWDPLLAELSEMGFDDRETNKELLAKNGGSIKRAVM 296
           LN+ +   NKY   Q    + GV E+D +LAE++E    D  T+ E  A +      AV 
Sbjct: 369 LNRTVSMINKYFDGQIPAYVEGVTEFDHVLAEVAEQSIADFHTHME--AVDYPRALEAVW 426

Query: 295 DLIAREKK 272
            LI+R  K
Sbjct: 427 TLISRTNK 434

>SYM_STRPN (P67580) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA|
           ligase) (MetRS)
          Length = 665

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 24/68 (35%), Positives = 34/68 (50%)
 Frame = -2

Query: 475 LNKEILRQNKYNLEQSVDDLCGVNEWDPLLAELSEMGFDDRETNKELLAKNGGSIKRAVM 296
           LN+ +   NKY   Q    + GV E+D +LAE++E    D  T+ E  A +      AV 
Sbjct: 369 LNRTVSMINKYFDGQIPAYVEGVTEFDHVLAEVAEQSIADFHTHME--AVDYPRALEAVW 426

Query: 295 DLIAREKK 272
            LI+R  K
Sbjct: 427 TLISRTNK 434

>MUC2_RAT (Q62635) Mucin-2 precursor (Intestinal mucin 2) (Fragment)|
          Length = 1513

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -2

Query: 724  PSSSENAAGFVPSVNVLAPEVIPEPSATTPAEVPTSLLTSIPVDLTVAATAP 569
            P++S   +   P+ +  +P   P  S T+P   PT+  TS     T + T+P
Sbjct: 1447 PTTSPTTSTTSPTTSTTSPTPSPTTSTTSPTPSPTTSTTSPTPSPTTSTTSP 1498

>PYGO_DROME (Q9V9W8) Protein pygopus (Protein gammy legs)|
          Length = 815

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -2

Query: 691 PSVNVLAPEVIPEPSATTPAEVPTSLLTSIPVDLTVAATAP 569
           PSV+ +A   +P P+  TP   PTS  TS+   +  ++ AP
Sbjct: 444 PSVSSVASSSVPSPA--TPTLTPTSTATSMSTSVPTSSPAP 482

>DMRT1_HUMAN (Q9Y5R6) Doublesex- and mab-3-related transcription factor 1 (DM|
           domain expressed in testis protein 1)
          Length = 373

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +3

Query: 600 GILVSKLVGTSAGVVAEGSGMTSGASTLTLGTK 698
           G LV    G+SAG  + G G  SGAS L  G+K
Sbjct: 36  GALVGAASGSSAGGSSRGGGSGSGASDLGAGSK 68

>ODP2_HUMAN (P10515) Dihydrolipoyllysine-residue acetyltransferase component of|
           pyruvate dehydrogenase complex, mitochondrial precursor
           (EC 2.3.1.12) (Pyruvate dehydrogenase complex E2
           subunit) (PDCE2) (E2) (Dihydrolipoamide
           S-acetyltransferase component
          Length = 614

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 697 FVPSVNVLAPEVIPEPSATTPAEVPTSLLTSIPV 596
           FVPS    AP  +  P+    A VPT + T IP+
Sbjct: 359 FVPSKVAPAPAAVVPPTGPGMAPVPTGVFTDIPI 392

>UBIB_PSESM (Q87UZ0) Probable ubiquinone biosynthesis protein ubiB|
          Length = 539

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 72  LSRLQQPHAADPPRSQHNK 128
           L R+ +PHA+DPPR  H++
Sbjct: 468 LERMSRPHASDPPRPWHDR 486


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,036,978
Number of Sequences: 219361
Number of extensions: 2001536
Number of successful extensions: 6614
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 6167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6596
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7479594804
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)