ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd19d02 |
|---|---|
| Clone Library Name | barley_pub |
>PININ_BOVIN (P79122) Pinin| Length = 703 Score = 33.5 bits (75), Expect = 0.45 Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 2/100 (2%) Frame = -3 Query: 379 REVPIIHIDILCYMSSRPWKGSYLQQEDEDMQELYIRIRHEAAVKSLTK--DMQQDDNKE 206 +E+PI+H D Q+E+E QE+ +++ E V+ K D Q ++ + Sbjct: 347 KEIPIVHSD-----------AEKEQEEEEQKQEMEVKMEEETEVRESEKQQDSQPEEVMD 395 Query: 205 VLKRFICLSNVQSKQHQPLVQQCQFTCTPEQGRCTNAYEP 86 VL+ + NV ++Q Q + P + + EP Sbjct: 396 VLEMVESVKNVIAEQEVMETNQVE-RVEPSENEASKELEP 434
>SYGB_VIBPA (Q87TP8) Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)| (Glycine--tRNA ligase beta chain) (GlyRS) Length = 688 Score = 32.7 bits (73), Expect = 0.76 Identities = 15/52 (28%), Positives = 34/52 (65%), Gaps = 4/52 (7%) Frame = -3 Query: 286 QELYIRIRHEAAVKSLTKDMQQ----DDNKEVLKRFICLSNVQSKQHQPLVQ 143 +E ++++ EA V ++ D + D+NK++L FI +SN++SK+ + +++ Sbjct: 265 EEEFLKVPSEALVYTMKGDQKYFPVYDENKKLLPNFIFVSNIESKEPRYVIE 316
>NUCKS_RAT (Q9EPJ0) Nuclear ubiquitous casein and cyclin-dependent kinases| substrate Length = 243 Score = 32.3 bits (72), Expect = 0.99 Identities = 21/98 (21%), Positives = 45/98 (45%) Frame = -3 Query: 406 PARAVQVLPREVPIIHIDILCYMSSRPWKGSYLQQEDEDMQELYIRIRHEAAVKSLTKDM 227 PA+ ++ PRE ++ G Q++ ED +E ++ + + + + + Sbjct: 33 PAKKIRSSPREA-----------KNKRRSGKNSQEDSEDSEEKDVKTKKDDSHSAEDSED 81 Query: 226 QQDDNKEVLKRFICLSNVQSKQHQPLVQQCQFTCTPEQ 113 ++DD+K V ++ S SKQ + L++ PE+ Sbjct: 82 EKDDHKSVRQQRQAASKAASKQREMLLEDVGSEEEPEE 119
>NUCKS_MOUSE (Q80XU3) Nuclear ubiquitous casein and cyclin-dependent kinases| substrate (JC7) Length = 234 Score = 32.3 bits (72), Expect = 0.99 Identities = 21/98 (21%), Positives = 45/98 (45%) Frame = -3 Query: 406 PARAVQVLPREVPIIHIDILCYMSSRPWKGSYLQQEDEDMQELYIRIRHEAAVKSLTKDM 227 PA+ ++ PRE ++ G Q++ ED +E ++ + + + + + Sbjct: 33 PAKKIRSSPREA-----------KNKRRSGKNSQEDSEDSEEKDVKTKKDDSHSAEDSED 81 Query: 226 QQDDNKEVLKRFICLSNVQSKQHQPLVQQCQFTCTPEQ 113 ++DD+K V ++ S SKQ + L++ PE+ Sbjct: 82 EKDDHKNVRQQRQAASKAASKQREMLLEDVGSEEEPEE 119
>PRS6B_RAT (Q63570) 26S protease regulatory subunit 6B (TAT-binding protein 7)| (TBP-7) Length = 418 Score = 31.6 bits (70), Expect = 1.7 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 5/88 (5%) Frame = -3 Query: 394 VQVLPREVPIIHIDILCYMSSRPWKG-SYLQQEDEDMQELYIR---IRHEAAVKSLTKDM 227 V+ + E+P + + SRP G S+L E ED+++LY R ++ E + ++ Sbjct: 8 VEKIQDEIPALSV-------SRPQTGLSFLGPEPEDLEDLYSRYKKLQQELEFLEVQEEY 60 Query: 226 QQDDNKEVLKRFI-CLSNVQSKQHQPLV 146 +D+ K + K F+ V+ Q PLV Sbjct: 61 IKDEQKNLKKEFLHAQEEVKRIQSIPLV 88
>PRS6B_MOUSE (P54775) 26S protease regulatory subunit 6B (MIP224)| (MB67-interacting protein) (TAT-binding protein 7) (TBP-7) (CIP21) Length = 418 Score = 31.6 bits (70), Expect = 1.7 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 5/88 (5%) Frame = -3 Query: 394 VQVLPREVPIIHIDILCYMSSRPWKG-SYLQQEDEDMQELYIR---IRHEAAVKSLTKDM 227 V+ + E+P + + SRP G S+L E ED+++LY R ++ E + ++ Sbjct: 8 VEKIQDEIPALSV-------SRPQTGLSFLGPEPEDLEDLYSRYKKLQQELEFLEVQEEY 60 Query: 226 QQDDNKEVLKRFI-CLSNVQSKQHQPLV 146 +D+ K + K F+ V+ Q PLV Sbjct: 61 IKDEQKNLKKEFLHAQEEVKRIQSIPLV 88
>PRS6B_HUMAN (P43686) 26S protease regulatory subunit 6B (MIP224)| (MB67-interacting protein) (TAT-binding protein 7) (TBP-7) Length = 418 Score = 30.4 bits (67), Expect = 3.8 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 5/68 (7%) Frame = -3 Query: 334 SRPWKG-SYLQQEDEDMQELYIR---IRHEAAVKSLTKDMQQDDNKEVLKRFI-CLSNVQ 170 SRP G S+L E ED+++LY R ++ E + ++ +D+ K + K F+ V+ Sbjct: 21 SRPQTGLSFLGPEPEDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVK 80 Query: 169 SKQHQPLV 146 Q PLV Sbjct: 81 RIQSIPLV 88
>PRGR_CANFA (Q9GLW0) Progesterone receptor (PR)| Length = 939 Score = 30.0 bits (66), Expect = 4.9 Identities = 25/108 (23%), Positives = 49/108 (45%) Frame = -3 Query: 448 EGPLYELSSLLAQLPARAVQVLPREVPIIHIDILCYMSSRPWKGSYLQQEDEDMQELYIR 269 E Y L + Q+P V++ + + + +L +++ P +G Q + E+M+ YIR Sbjct: 797 ESSFYSLCLTMWQIPQEFVKLQVSQEEFLCMKVLLLLNTIPLEGLRSQNQFEEMRSSYIR 856 Query: 268 IRHEAAVKSLTKDMQQDDNKEVLKRFICLSNVQSKQHQPLVQQCQFTC 125 +K++ ++Q +RF L+ + H LV+Q C Sbjct: 857 ----ELIKAI--GLRQKGVVSSSQRFYQLTKLLDNLHD-LVKQLHLYC 897
>PRGR_RABIT (P06186) Progesterone receptor (PR)| Length = 930 Score = 30.0 bits (66), Expect = 4.9 Identities = 25/108 (23%), Positives = 49/108 (45%) Frame = -3 Query: 448 EGPLYELSSLLAQLPARAVQVLPREVPIIHIDILCYMSSRPWKGSYLQQEDEDMQELYIR 269 E Y L + Q+P V++ + + + +L +++ P +G Q + E+M+ YIR Sbjct: 788 ESSFYSLCLTMWQIPQEFVKLQVSQEEFLCMKVLLLLNTIPLEGLRSQSQFEEMRSSYIR 847 Query: 268 IRHEAAVKSLTKDMQQDDNKEVLKRFICLSNVQSKQHQPLVQQCQFTC 125 +K++ ++Q +RF L+ + H LV+Q C Sbjct: 848 ----ELIKAI--GLRQKGVVSSSQRFYQLTKLLDNLHD-LVKQLHLYC 888
>EIN2_ARATH (Q9S814) Ethylene-insensitive protein 2 (EIN-2) (AtEIN2) (Cytokinin| resistant protein AtCKR1) Length = 1294 Score = 30.0 bits (66), Expect = 4.9 Identities = 25/97 (25%), Positives = 36/97 (37%), Gaps = 5/97 (5%) Frame = -1 Query: 414 PSFLPGLSKYYQGKSQSFTSISYATCLQDLGKEVTYSKRMKTCKSYTS-----GLGMKQR 250 P PG + +S S S + G T + K Y+S GL M R Sbjct: 877 PGPAPGFENFAGSRSISRQSERSYYGVPSSGNTDTVGAAVANEKKYSSMPDISGLSMSAR 936 Query: 249 SNHLPRTCNKMITKRSSKGSFACQMSRASSTNLLYSS 139 + HLP + S G + R S+ + LYS+ Sbjct: 937 NMHLPNNKSGYWDPSSGGGGYGASYGRLSNESSLYSN 973
>UVRA_OCEIH (Q8ENJ6) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 958 Score = 30.0 bits (66), Expect = 4.9 Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 5/58 (8%) Frame = -3 Query: 322 KGSYLQQEDEDMQELYIRIRHEAAVKSLTKDMQQDDNKE-----VLKRFICLSNVQSK 164 KG +++ + QE Y+RIR + ++ +T D+Q + NK+ V+ R + V S+ Sbjct: 161 KGEHVKILENLKQEGYVRIRVDNEMREVTDDIQLEKNKKHSIEVVIDRIVVKDGVASR 218
>GCR_MOUSE (P06537) Glucocorticoid receptor (GR)| Length = 783 Score = 29.6 bits (65), Expect = 6.4 Identities = 15/48 (31%), Positives = 22/48 (45%) Frame = +1 Query: 409 AGLAAKTARREVPRPRSPAARCSTMLKMTLKNDHQEGSNSTHRPDSTP 552 A L T+R E P+ +PAA C+T + H + S+ S P Sbjct: 136 ANLNRSTSRPENPKSSTPAAGCATPTEKEFPQTHSDPSSEQQNRKSQP 183
>KINH_MOUSE (Q61768) Kinesin heavy chain (Ubiquitous kinesin heavy chain)| (UKHC) Length = 963 Score = 29.6 bits (65), Expect = 6.4 Identities = 12/36 (33%), Positives = 26/36 (72%), Gaps = 1/36 (2%) Frame = -3 Query: 310 LQQEDEDMQELYIRI-RHEAAVKSLTKDMQQDDNKE 206 +++ ++++ +RI +HEA +KSLT+ +Q D+ K+ Sbjct: 622 MEENEKELAACQLRISQHEAKIKSLTEYLQNDEQKK 657
>INVO_MOUSE (P48997) Involucrin| Length = 467 Score = 29.6 bits (65), Expect = 6.4 Identities = 14/54 (25%), Positives = 29/54 (53%) Frame = -3 Query: 307 QQEDEDMQELYIRIRHEAAVKSLTKDMQQDDNKEVLKRFICLSNVQSKQHQPLV 146 QQ++ MQE ++R + + + + QQ +E ++ +CL Q +Q Q ++ Sbjct: 121 QQQEPQMQEQHLR-QQQQQQQQQQQQQQQQQQQETQEQGLCLGQKQQQQQQDML 173
>PRGR_HUMAN (P06401) Progesterone receptor (PR)| Length = 933 Score = 29.6 bits (65), Expect = 6.4 Identities = 25/108 (23%), Positives = 49/108 (45%) Frame = -3 Query: 448 EGPLYELSSLLAQLPARAVQVLPREVPIIHIDILCYMSSRPWKGSYLQQEDEDMQELYIR 269 E Y L + Q+P V++ + + + +L +++ P +G Q + E+M+ YIR Sbjct: 791 ESSFYSLCLTMWQIPQEFVKLQVSQEEFLCMKVLLLLNTIPLEGLRSQTQFEEMRSSYIR 850 Query: 268 IRHEAAVKSLTKDMQQDDNKEVLKRFICLSNVQSKQHQPLVQQCQFTC 125 +K++ ++Q +RF L+ + H LV+Q C Sbjct: 851 ----ELIKAI--GLRQKGVVSSSQRFYQLTKLLDNLHD-LVKQLHLYC 891
>IMA1_YEAST (Q02821) Importin alpha subunit (Karyopherin alpha subunit)| (Serine-rich RNA polymerase I suppressor protein) Length = 542 Score = 29.6 bits (65), Expect = 6.4 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Frame = -3 Query: 328 PWKGSYLQQEDEDM----QELYIRIRHEAAVKSLTKDMQQDDNKEVLKRFICLSNVQSKQ 161 P G+ +EDE Q+ Y +++ E + +T+ + DD +E L + + S++ Sbjct: 61 PTDGADSDEEDESSVSADQQFYSQLQQE--LPQMTQQLNSDDMQEQLSATVKFRQILSRE 118 Query: 160 HQP 152 H+P Sbjct: 119 HRP 121
>PRGR_SHEEP (Q28590) Progesterone receptor (PR) (Fragment)| Length = 377 Score = 29.6 bits (65), Expect = 6.4 Identities = 25/108 (23%), Positives = 49/108 (45%) Frame = -3 Query: 448 EGPLYELSSLLAQLPARAVQVLPREVPIIHIDILCYMSSRPWKGSYLQQEDEDMQELYIR 269 E Y L + Q+P V++ + + + +L +++ P +G Q + E+M+ YIR Sbjct: 242 ESSFYSLCLTMWQIPQEFVKLQVSQEEFLCMKVLLLLNTIPLEGLRSQNQFEEMRSSYIR 301 Query: 268 IRHEAAVKSLTKDMQQDDNKEVLKRFICLSNVQSKQHQPLVQQCQFTC 125 +K++ ++Q +RF L+ + H LV+Q C Sbjct: 302 ----ELIKAI--GLRQKGVVPSSQRFYQLTKLLDNLHD-LVKQLHLYC 342
>PININ_CANFA (P79149) Pinin| Length = 773 Score = 29.6 bits (65), Expect = 6.4 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 4/78 (5%) Frame = -3 Query: 307 QQEDEDMQELYIRIRHEAAVKSLTK--DMQQDDNKEVLKRF--ICLSNVQSKQHQPLVQQ 140 Q+E+E QE+ ++I E V+ K D Q ++ +VL+ + + NV ++Q Q Sbjct: 353 QEEEEQKQEMEVKIEEETEVRESEKQQDSQPEEVMDVLEMLLHVAVKNVIAEQEVMETNQ 412 Query: 139 CQFTCTPEQGRCTNAYEP 86 + + P + + EP Sbjct: 413 VE-SVEPSENETSKELEP 429
>ABCA4_HUMAN (P78363) Retinal-specific ATP-binding cassette transporter| (ATP-binding cassette sub-family A member 4) (RIM ABC transporter) (RIM protein) (RmP) (Stargardt disease protein) Length = 2273 Score = 29.3 bits (64), Expect = 8.4 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = +1 Query: 457 SPAARCSTMLKMTLKNDHQEGSNSTHRPDSTPMST 561 SP+ RCST K+T+ + EG+ P T ST Sbjct: 1485 SPSCRCSTREKLTMLPECPEGAGGLPPPQRTQRST 1519 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,423,157 Number of Sequences: 219361 Number of extensions: 1525285 Number of successful extensions: 4695 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 4462 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4692 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4872342800 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
