ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd18n22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KLK13_HUMAN (Q9UKR3) Kallikrein-13 precursor (EC 3.4.21.-) (Kall... 31 4.1
2GP10_DICDI (Q06885) Glycoprotein gp100 precursor (P29F8) 30 5.3
3TAM_DEIRA (Q9RX93) Trans-aconitate 2-methyltransferase (EC 2.1.1... 30 6.9
4SNT1_YEAST (P25357) Probable DNA-binding protein SNT1 30 9.1

>KLK13_HUMAN (Q9UKR3) Kallikrein-13 precursor (EC 3.4.21.-) (Kallikrein-like|
           protein 4) (KLK-L4)
          Length = 277

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +2

Query: 11  ILLEGFLWHPKLIYTKANCLKSDKIIKNYLGK 106
           +L  G L HPK + T A+CLK    +K YLGK
Sbjct: 59  LLCGGVLVHPKWVLTAAHCLKEG--LKVYLGK 88



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>GP10_DICDI (Q06885) Glycoprotein gp100 precursor (P29F8)|
          Length = 544

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 388 SKPATEPTNLLVITSADLNPTLSRSISRNFSGYIQISLKFSLATSD 525
           S P T  T +L   +   N T+S  I    SGY QI +    +T+D
Sbjct: 404 SSPKTTNTTMLSFINNSPNSTVSNEIIEMISGYFQIKISTKPSTTD 449



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>TAM_DEIRA (Q9RX93) Trans-aconitate 2-methyltransferase (EC 2.1.1.144)|
          Length = 258

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 623 PLLFVKIWSLLRPGGIFIMEPQPWSSYRKNRLVSEVAKE 507
           P L  ++W  LRPGG+  ++      +  +RL++  A E
Sbjct: 108 PRLLARLWEHLRPGGVLAVQVPANHDHASHRLLTATANE 146



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>SNT1_YEAST (P25357) Probable DNA-binding protein SNT1|
          Length = 1226

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 21/66 (31%), Positives = 31/66 (46%)
 Frame = +2

Query: 2   ENLILLEGFLWHPKLIYTKANCLKSDKIIKNYLGKAMPPPPCPYHSLGAC*KGHFHKLLI 181
           E+ + LEG+L HPK         K  K I +Y+G    P  C  H        ++ +LLI
Sbjct: 677 EHSLFLEGYLIHPK---------KFGK-ISHYMGGLRSPEECVLHYYRTKKTVNYKQLLI 726

Query: 182 QRHVKR 199
            ++ KR
Sbjct: 727 DKNKKR 732


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,705,324
Number of Sequences: 219361
Number of extensions: 2558639
Number of successful extensions: 6716
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6709
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 6856295237
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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