Clone Name | rbasd18n22 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_483574.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1408 Score = 248 bits (125), Expect = 2e-62 Identities = 267/313 (85%), Gaps = 1/313 (0%) Strand = Plus / Minus Query: 363 tttgtggtaaacttcaattgggcggtcaaaaccagcaacagaaccaaccaatctgttggt 422 ||||||||||||||| ||||||||||||||||||| ||||| || ||| | ||| || Sbjct: 1045 tttgtggtaaacttcgattgggcggtcaaaaccagtaacagcgccctccagtttgtccgt 986 Query: 423 aatcacctctgctgacctgaatcctaccttgtccagaagtatctcccggaatttctcagg 482 || ||||||| | ||||||||||| | |||||| |||||||||||||||||||| || || Sbjct: 985 aaccacctctaccgacctgaatccgatcttgtctagaagtatctcccggaatttatctgg 926 Query: 483 atatatacagatatcattgaagttttctttggcaacctctgacactaatctgtttttcct 542 || ||| ||| ||||||||| ||||||||||||||||| || ||||||||| |||| Sbjct: 925 atgtattaggatggtattgaagttctctttggcaacctctgaaaccaatctgtttctcct 866 Query: 543 atacgagctccaaggttgaggttccatgataaaaatccctcccggtcttagaagactcca 602 ||| ||| ||||||||||||| ||||| ||||||| || |||||||||||||| ||||| Sbjct: 865 atatgaggtccaaggttgaggctccataataaaaactccacccggtcttagaagtctcca 806 Query: 603 tatcttcacaaacaaaagtggttataccatcatcaccccagttcaggtggatccattttg 662 ||||||||||| ||||| |||| ||||| |||||||||||||||||||||||||| | Sbjct: 805 gatcttcacaaa-taaagtaattatgccatcgtcaccccagttcaggtggatccatttgg 747 Query: 663 tcacgctcaaaca 675 |||| |||||||| Sbjct: 746 tcacactcaaaca 734
>dbj|AK106511.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-H09, full insert sequence Length = 1407 Score = 248 bits (125), Expect = 2e-62 Identities = 267/313 (85%), Gaps = 1/313 (0%) Strand = Plus / Minus Query: 363 tttgtggtaaacttcaattgggcggtcaaaaccagcaacagaaccaaccaatctgttggt 422 ||||||||||||||| ||||||||||||||||||| ||||| || ||| | ||| || Sbjct: 1045 tttgtggtaaacttcgattgggcggtcaaaaccagtaacagcgccctccagtttgtccgt 986 Query: 423 aatcacctctgctgacctgaatcctaccttgtccagaagtatctcccggaatttctcagg 482 || ||||||| | ||||||||||| | |||||| |||||||||||||||||||| || || Sbjct: 985 aaccacctctaccgacctgaatccgatcttgtctagaagtatctcccggaatttatctgg 926 Query: 483 atatatacagatatcattgaagttttctttggcaacctctgacactaatctgtttttcct 542 || ||| ||| ||||||||| ||||||||||||||||| || ||||||||| |||| Sbjct: 925 atgtattaggatggtattgaagttctctttggcaacctctgaaaccaatctgtttctcct 866 Query: 543 atacgagctccaaggttgaggttccatgataaaaatccctcccggtcttagaagactcca 602 ||| ||| ||||||||||||| ||||| ||||||| || |||||||||||||| ||||| Sbjct: 865 atatgaggtccaaggttgaggctccataataaaaactccacccggtcttagaagtctcca 806 Query: 603 tatcttcacaaacaaaagtggttataccatcatcaccccagttcaggtggatccattttg 662 ||||||||||| ||||| |||| ||||| |||||||||||||||||||||||||| | Sbjct: 805 gatcttcacaaa-taaagtaattatgccatcgtcaccccagttcaggtggatccatttgg 747 Query: 663 tcacgctcaaaca 675 |||| |||||||| Sbjct: 746 tcacactcaaaca 734
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 93.7 bits (47), Expect = 7e-16 Identities = 81/91 (89%), Gaps = 1/91 (1%) Strand = Plus / Minus Query: 584 ccggtcttagaagactccatatcttcacaaacaaaagtggttataccatcatcaccccag 643 ||||||||||||| ||||| ||||||||||| ||| || |||| ||||| ||||||||| Sbjct: 27059777 ccggtcttagaagtctccagatcttcacaaataaa-gtaattatgccatcgtcaccccag 27059719 Query: 644 ttcaggtggatccattttgtcacgctcaaac 674 ||||||||||||||||| ||||| ||||||| Sbjct: 27059718 ttcaggtggatccatttggtcacactcaaac 27059688 Score = 65.9 bits (33), Expect = 2e-07 Identities = 39/41 (95%) Strand = Plus / Minus Query: 363 tttgtggtaaacttcaattgggcggtcaaaaccagcaacag 403 ||||||||||||||| ||||||||||||||||||| ||||| Sbjct: 27060578 tttgtggtaaacttcgattgggcggtcaaaaccagtaacag 27060538 Score = 65.9 bits (33), Expect = 2e-07 Identities = 54/61 (88%) Strand = Plus / Minus Query: 517 acctctgacactaatctgtttttcctatacgagctccaaggttgaggttccatgataaaa 576 |||||||| || ||||||||| ||||||| ||| ||||||||||||| ||||| |||||| Sbjct: 27059950 acctctgaaaccaatctgtttctcctatatgaggtccaaggttgaggctccataataaaa 27059891 Query: 577 a 577 | Sbjct: 27059890 a 27059890 Score = 60.0 bits (30), Expect = 1e-05 Identities = 63/74 (85%) Strand = Plus / Minus Query: 447 taccttgtccagaagtatctcccggaatttctcaggatatatacagatatcattgaagtt 506 ||||||||| |||||||||||||||||||| || |||| ||| ||| ||||||||| Sbjct: 27060406 taccttgtctagaagtatctcccggaatttatctggatgtattaggatggtattgaagtt 27060347 Query: 507 ttctttggcaacct 520 ||||||||||||| Sbjct: 27060346 ctctttggcaacct 27060333
>dbj|AP003948.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1211_G06 Length = 96421 Score = 93.7 bits (47), Expect = 7e-16 Identities = 81/91 (89%), Gaps = 1/91 (1%) Strand = Plus / Minus Query: 584 ccggtcttagaagactccatatcttcacaaacaaaagtggttataccatcatcaccccag 643 ||||||||||||| ||||| ||||||||||| ||| || |||| ||||| ||||||||| Sbjct: 30864 ccggtcttagaagtctccagatcttcacaaataaa-gtaattatgccatcgtcaccccag 30806 Query: 644 ttcaggtggatccattttgtcacgctcaaac 674 ||||||||||||||||| ||||| ||||||| Sbjct: 30805 ttcaggtggatccatttggtcacactcaaac 30775 Score = 65.9 bits (33), Expect = 2e-07 Identities = 39/41 (95%) Strand = Plus / Minus Query: 363 tttgtggtaaacttcaattgggcggtcaaaaccagcaacag 403 ||||||||||||||| ||||||||||||||||||| ||||| Sbjct: 31665 tttgtggtaaacttcgattgggcggtcaaaaccagtaacag 31625 Score = 65.9 bits (33), Expect = 2e-07 Identities = 54/61 (88%) Strand = Plus / Minus Query: 517 acctctgacactaatctgtttttcctatacgagctccaaggttgaggttccatgataaaa 576 |||||||| || ||||||||| ||||||| ||| ||||||||||||| ||||| |||||| Sbjct: 31037 acctctgaaaccaatctgtttctcctatatgaggtccaaggttgaggctccataataaaa 30978 Query: 577 a 577 | Sbjct: 30977 a 30977 Score = 60.0 bits (30), Expect = 1e-05 Identities = 63/74 (85%) Strand = Plus / Minus Query: 447 taccttgtccagaagtatctcccggaatttctcaggatatatacagatatcattgaagtt 506 ||||||||| |||||||||||||||||||| || |||| ||| ||| ||||||||| Sbjct: 31493 taccttgtctagaagtatctcccggaatttatctggatgtattaggatggtattgaagtt 31434 Query: 507 ttctttggcaacct 520 ||||||||||||| Sbjct: 31433 ctctttggcaacct 31420
>ref|NM_124492.1| Arabidopsis thaliana S-adenosylmethionine-dependent methyltransferase/ methyltransferase AT5G51130 mRNA, complete cds Length = 957 Score = 56.0 bits (28), Expect = 2e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 628 accatcatcaccccagttcaggtggatccattttgtcacgctcaaaca 675 |||||||||||||||||||| || | |||||||||||| |||||||| Sbjct: 690 accatcatcaccccagttcaaatgaacccattttgtcacactcaaaca 643
>gb|BT010996.1| Arabidopsis thaliana At5g51130 mRNA, complete cds Length = 957 Score = 56.0 bits (28), Expect = 2e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 628 accatcatcaccccagttcaggtggatccattttgtcacgctcaaaca 675 |||||||||||||||||||| || | |||||||||||| |||||||| Sbjct: 690 accatcatcaccccagttcaaatgaacccattttgtcacactcaaaca 643
>gb|BT010868.1| Arabidopsis thaliana At5g51130 mRNA, complete cds Length = 1207 Score = 56.0 bits (28), Expect = 2e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 628 accatcatcaccccagttcaggtggatccattttgtcacgctcaaaca 675 |||||||||||||||||||| || | |||||||||||| |||||||| Sbjct: 770 accatcatcaccccagttcaaatgaacccattttgtcacactcaaaca 723
>ref|XM_791228.1| PREDICTED: Strongylocentrotus purpuratus similar to related to bicoid interacting protein (2M394) (LOC591676), mRNA Length = 1117 Score = 56.0 bits (28), Expect = 2e-04 Identities = 52/60 (86%) Strand = Plus / Minus Query: 633 catcaccccagttcaggtggatccattttgtcacgctcaaacacatgatggtgtcatact 692 |||| ||||||||||| |||||||| || || ||||||| ||||| ||||||||| |||| Sbjct: 253 catcgccccagttcagatggatccacttggtgacgctcagacacaagatggtgtcgtact 194
>emb|BX832242.1|CNS0A1XC Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH60ZF07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1363 Score = 56.0 bits (28), Expect = 2e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 628 accatcatcaccccagttcaggtggatccattttgtcacgctcaaaca 675 |||||||||||||||||||| || | |||||||||||| |||||||| Sbjct: 883 accatcatcaccccagttcaaatgaacccattttgtcacactcaaaca 836
>dbj|AB023044.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MWD22 Length = 87180 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 628 accatcatcaccccagttcaggtggatccattttgtcacgctcaaac 674 |||||||||||||||||||| || | |||||||||||| ||||||| Sbjct: 17040 accatcatcaccccagttcaaatgaacccattttgtcacactcaaac 16994
>ref|NM_147908.2| Arabidopsis thaliana unknown protein AT5G23575 mRNA, complete cds Length = 2203 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Plus Query: 551 tccaaggttgaggttccatgat 572 |||||||||||||||||||||| Sbjct: 1519 tccaaggttgaggttccatgat 1540
>gb|AC158156.10| Mus musculus chromosome 3, clone RP23-145F12, complete sequence Length = 201984 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Plus Query: 493 atatcattgaagttttctttgg 514 |||||||||||||||||||||| Sbjct: 48848 atatcattgaagttttctttgg 48869
>gb|AC115738.9| Mus musculus chromosome 3, clone RP23-474P24, complete sequence Length = 188507 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Plus Query: 493 atatcattgaagttttctttgg 514 |||||||||||||||||||||| Sbjct: 180337 atatcattgaagttttctttgg 180358
>gb|AY143924.1| Arabidopsis thaliana At5g08500/MAH20_6 mRNA, complete cds Length = 1782 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Plus Query: 551 tccaaggttgaggttccatgat 572 |||||||||||||||||||||| Sbjct: 1266 tccaaggttgaggttccatgat 1287
>gb|AY064127.1| Arabidopsis thaliana AT5g08500/MAH20_6 mRNA, complete cds Length = 2063 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Plus Query: 551 tccaaggttgaggttccatgat 572 |||||||||||||||||||||| Sbjct: 1426 tccaaggttgaggttccatgat 1447
>dbj|AK222196.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL24-24-F12 Length = 1462 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Plus Query: 551 tccaaggttgaggttccatgat 572 |||||||||||||||||||||| Sbjct: 794 tccaaggttgaggttccatgat 815
>gb|U20626.1|ATU20626 Arabidopsis thaliana calcium-dependent protein kinase (CDPK9) gene, complete cds Length = 4420 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 551 tccaaggttgaggttccatgat 572 |||||||||||||||||||||| Sbjct: 4234 tccaaggttgaggttccatgat 4213
>gb|AC084043.4|AC084043 Mus musculus 1 BAC RP23-265D16 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence Length = 63324 Score = 44.1 bits (22), Expect = 0.61 Identities = 28/30 (93%) Strand = Plus / Minus Query: 393 accagcaacagaaccaaccaatctgttggt 422 |||||| |||||||||| |||||||||||| Sbjct: 49333 accagccacagaaccaaacaatctgttggt 49304
>gb|AC124989.7| Mus musculus chromosome 1, clone RP24-404O8, complete sequence Length = 184453 Score = 44.1 bits (22), Expect = 0.61 Identities = 28/30 (93%) Strand = Plus / Plus Query: 393 accagcaacagaaccaaccaatctgttggt 422 |||||| |||||||||| |||||||||||| Sbjct: 112194 accagccacagaaccaaacaatctgttggt 112223
>dbj|AB025633.2| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQM1 Length = 81365 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Plus Query: 551 tccaaggttgaggttccatgat 572 |||||||||||||||||||||| Sbjct: 28405 tccaaggttgaggttccatgat 28426
>gb|AC115893.10| Mus musculus chromosome 1, clone RP24-442I13, complete sequence Length = 153053 Score = 44.1 bits (22), Expect = 0.61 Identities = 28/30 (93%) Strand = Plus / Plus Query: 393 accagcaacagaaccaaccaatctgttggt 422 |||||| |||||||||| |||||||||||| Sbjct: 9382 accagccacagaaccaaacaatctgttggt 9411
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence Length = 384518 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 552 ccaaggttgaggttccatgat 572 ||||||||||||||||||||| Sbjct: 59757 ccaaggttgaggttccatgat 59777
>emb|AL672045.11| Human DNA sequence from clone RP11-577O19 on chromosome 1 ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) (RAC1) pseudogene, complete sequence Length = 180303 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 328 tctgagcaagagcaagcacca 348 ||||||||||||||||||||| Sbjct: 77918 tctgagcaagagcaagcacca 77938
>emb|AL589863.11| Human DNA sequence from clone RP11-310J24 on chromosome 10, complete sequence Length = 168231 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 483 atatatacagatatcattgaagttt 507 |||||||||||||| |||||||||| Sbjct: 116804 atatatacagatattattgaagttt 116828
>gb|BT017116.1| Zea mays clone EL01N0364B06.c mRNA sequence Length = 1105 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 103 gaaggcaatgccaccaccaccctg 126 |||||||| ||||||||||||||| Sbjct: 613 gaaggcaaggccaccaccaccctg 590
>ref|XM_524911.1| PREDICTED: Pan troglodytes LOC469528 (LOC469528), mRNA Length = 906 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 625 tataccatcatcaccccagt 644 |||||||||||||||||||| Sbjct: 790 tataccatcatcaccccagt 809
>gb|AY376688.1| Crinipellis perniciosa mitochondrion, complete genome Length = 109103 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 gagcaagagcaagcaccaat 350 |||||||||||||||||||| Sbjct: 67893 gagcaagagcaagcaccaat 67874
>gb|BC017157.1| Mus musculus bin3, bicoid-interacting 3, homolog (Drosophila), mRNA (cDNA clone IMAGE:4911622), complete cds Length = 1473 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 632 tcatcaccccagttcaggtg 651 |||||||||||||||||||| Sbjct: 620 tcatcaccccagttcaggtg 601
>gb|BC026876.1| Mus musculus bin3, bicoid-interacting 3, homolog (Drosophila), mRNA (cDNA clone MGC:30590 IMAGE:3662118), complete cds Length = 2640 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 632 tcatcaccccagttcaggtg 651 |||||||||||||||||||| Sbjct: 1820 tcatcaccccagttcaggtg 1801
>ref|NM_144913.2| Mus musculus bin3, bicoid-interacting 3, homolog (Drosophila) (Bcdin3), mRNA Length = 2640 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 632 tcatcaccccagttcaggtg 651 |||||||||||||||||||| Sbjct: 1820 tcatcaccccagttcaggtg 1801
>gb|AC147086.3| Pan troglodytes BAC clone RP43-58O23 from 7, complete sequence Length = 154679 Score = 40.1 bits (20), Expect = 9.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 352 tcattccatcatttgtggtaaacttcaa 379 ||||||||||||||||||| ||||||| Sbjct: 26664 tcattccatcatttgtggtgtacttcaa 26691
>gb|AC003992.2| Homo sapiens BAC clone CTA-250D13 from 7, complete sequence Length = 176109 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 aaaatcttatattactggaa 22 |||||||||||||||||||| Sbjct: 165380 aaaatcttatattactggaa 165361
>gb|AC146849.1| Pan troglodytes BAC clone RP43-163I11 from 7, complete sequence Length = 147837 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 aaaatcttatattactggaa 22 |||||||||||||||||||| Sbjct: 141628 aaaatcttatattactggaa 141609
>gb|AC074112.8| Homo sapiens BAC clone RP11-204G8 from 7, complete sequence Length = 146098 Score = 40.1 bits (20), Expect = 9.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 352 tcattccatcatttgtggtaaacttcaa 379 ||||||||||||||||||| ||||||| Sbjct: 138479 tcattccatcatttgtggtgtacttcaa 138452
>gb|AF047651.1| Caenorhabditis elegans cosmid C05D2, complete sequence Length = 46437 Score = 40.1 bits (20), Expect = 9.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 626 ataccatcatcaccccagttcaggtgga 653 |||| ||||||||| ||||||||||||| Sbjct: 15828 atacgatcatcaccacagttcaggtgga 15855
>emb|AL442126.6| Human DNA sequence from clone RP11-409J23 on chromosome 13, complete sequence Length = 133789 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 atattactggaaggttttct 30 |||||||||||||||||||| Sbjct: 123028 atattactggaaggttttct 123047
>emb|AL365440.13| Human DNA sequence from clone RP11-144L1 on chromosome 1 Contains the OR10T1P olfactory receptor, family 10, subfamily T, member 1 pseudogene, an etoposide induced 2.4 mRNA (EI24) pseudogene, the OR10K1 gene for olfactory receptor, family 10, subfamily K, member 1, the OR10R2 gene for olfactory receptor, family 10, subfamily R, member 2, the OR10R3P olfactory receptor, family 10, subfamily R, member 3 pseudogene, a novel gene, the OR10R1P olfactory receptor, family 10, subfamily R, member 1 pseudogene, a heat shock 90kDa protein 1, alpha (HSPCA) pseudogene and the OR6Y1 gene for olfactory receptor, family 6, subfamily Y, member 1, complete sequence Length = 126954 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 625 tataccatcatcaccccagt 644 |||||||||||||||||||| Sbjct: 69806 tataccatcatcaccccagt 69825
>emb|AL031230.1|HS73M23 Human DNA sequence from clone RP1-73M23 on chromosome 6p22.2-22.3 Contains the 5' part of the GPLD1 gene for glycosylphosphatidylinositol specific phospholipase D1, the SSADH gene for aldehyde dehydrogenase 5 family member A, the 3' part of the KIAA0319 gene and a CpG island, complete sequence Length = 126990 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 627 taccatcatcaccccagttcaggt 650 |||||||| ||||||||||||||| Sbjct: 93476 taccatcaccaccccagttcaggt 93453
>emb|CR942205.4| Human DNA sequence from clone RP11-948M1 on chromosome 6, complete sequence Length = 176819 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 627 taccatcatcaccccagttcaggt 650 |||||||| ||||||||||||||| Sbjct: 138822 taccatcaccaccccagttcaggt 138845
>emb|AL935258.1| Lactobacillus plantarum strain WCFS1 complete genome; segment 7/11 Length = 297050 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 catctacacaaaggctaatt 65 |||||||||||||||||||| Sbjct: 272726 catctacacaaaggctaatt 272707
>emb|CR925830.3| Human DNA sequence from clone RP11-195J19 on chromosome 6, complete sequence Length = 167847 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 627 taccatcatcaccccagttcaggt 650 |||||||| ||||||||||||||| Sbjct: 145198 taccatcaccaccccagttcaggt 145221
>gb|AC078816.16| Homo sapiens 3 BAC RP11-600P18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 183861 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 148 ttgttgaaaaggacacttccacaa 171 ||||||||||||||||||| |||| Sbjct: 80148 ttgttgaaaaggacacttctacaa 80125
>gb|AC112508.2| Homo sapiens 3 BAC RP11-347G18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 164435 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 gacacttccacaaactgcta 178 |||||||||||||||||||| Sbjct: 41284 gacacttccacaaactgcta 41265
>dbj|AK122667.1| Homo sapiens cDNA FLJ16108 fis, clone THYMU2009425, moderately similar to OLFACTORY RECEPTOR-LIKE PROTEIN HGMP07J Length = 2031 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 625 tataccatcatcaccccagt 644 |||||||||||||||||||| Sbjct: 595 tataccatcatcaccccagt 614
>dbj|AK139731.1| Mus musculus 2 cells egg cDNA, RIKEN full-length enriched library, clone:B020013O05 product:hypothetical Bicoid-interacting 3/Generic methyltransferase/SAM (and some other nucleotide) binding motif containing protein, full insert sequence Length = 1397 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 632 tcatcaccccagttcaggtg 651 |||||||||||||||||||| Sbjct: 583 tcatcaccccagttcaggtg 564
>gb|AF411849.1|AF411849S1 Homo sapiens USH3 region, partial sequence Length = 198334 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 148 ttgttgaaaaggacacttccacaa 171 ||||||||||||||||||| |||| Sbjct: 179206 ttgttgaaaaggacacttctacaa 179183
>dbj|AK154415.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630030B21 product:hypothetical Bicoid-interacting 3/Generic methyltransferase/SAM (and some other nucleotide) binding motif/Glycine-rich region profile containing protein, full insert sequence Length = 3128 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 632 tcatcaccccagttcaggtg 651 |||||||||||||||||||| Sbjct: 2314 tcatcaccccagttcaggtg 2295
>ref|XM_938364.1| PREDICTED: Homo sapiens similar to Olfactory receptor 10R2 (LOC649296), mRNA Length = 2256 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 625 tataccatcatcaccccagt 644 |||||||||||||||||||| Sbjct: 826 tataccatcatcaccccagt 845
>ref|NG_004362.1| Homo sapiens olfactory receptor, family 10, subfamily R, member 3 pseudogene (OR10R3P) on chromosome 1 Length = 1139 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 625 tataccatcatcaccccagt 644 |||||||||||||||||||| Sbjct: 926 tataccatcatcaccccagt 945
>tpg|BK004673.1| TPA: TPA_exp: Homo sapiens olfactory receptor OR1-9 pseudogene, complete sequence Length = 939 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 625 tataccatcatcaccccagt 644 |||||||||||||||||||| Sbjct: 826 tataccatcatcaccccagt 845
>dbj|AP003390.1| Homo sapiens genomic DNA, chromosome 11q clone:CTD-2523D13, complete sequences Length = 221091 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 450 cttgtccagaagtatctccc 469 |||||||||||||||||||| Sbjct: 108192 cttgtccagaagtatctccc 108173
>gb|AC153641.3| Mus musculus 6 BAC RP23-5F24 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 193417 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 acaaaattatcaaaaactac 97 |||||||||||||||||||| Sbjct: 164011 acaaaattatcaaaaactac 164030
>gb|AC158541.1| Pan troglodytes BAC clone CH251-19F24 from chromosome unknown, complete sequence Length = 186577 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 aaaatcttatattactggaa 22 |||||||||||||||||||| Sbjct: 54495 aaaatcttatattactggaa 54514
>ref|XM_222048.3| PREDICTED: Rattus norvegicus similar to Hypothetical protein MGC28888 (LOC304361), mRNA Length = 2943 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 632 tcatcaccccagttcaggtg 651 |||||||||||||||||||| Sbjct: 2101 tcatcaccccagttcaggtg 2082
>gb|AC010027.6| Drosophila melanogaster 3L BAC RP98-22B15 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 168059 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 655 ccattttgtcacgctcaaac 674 |||||||||||||||||||| Sbjct: 40603 ccattttgtcacgctcaaac 40622
>gb|AC140052.4| Mus musculus BAC clone RP23-346E11 from chromosome 15, complete sequence Length = 210091 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 tgacaaaattatcaaaaact 95 |||||||||||||||||||| Sbjct: 136929 tgacaaaattatcaaaaact 136948
>gb|BC088435.1| Rattus norvegicus similar to Hypothetical protein MGC28888, mRNA (cDNA clone IMAGE:7125256), partial cds Length = 1537 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 632 tcatcaccccagttcaggtg 651 |||||||||||||||||||| Sbjct: 703 tcatcaccccagttcaggtg 684
>dbj|AP005269.1| Pan troglodytes DNA, chromosome 7 clone:PTB-102E09, complete sequence Length = 172438 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 aaaatcttatattactggaa 22 |||||||||||||||||||| Sbjct: 136454 aaaatcttatattactggaa 136473
>gb|AC154199.2| Mus musculus BAC clone RP24-396N5 from 13, complete sequence Length = 120685 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 atatcattccttgggtgctt 149 |||||||||||||||||||| Sbjct: 25598 atatcattccttgggtgctt 25579
>gb|AE002656.4| Drosophila melanogaster chromosome 3L, section 82 of 83 of the complete sequence Length = 203636 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 655 ccattttgtcacgctcaaac 674 |||||||||||||||||||| Sbjct: 75164 ccattttgtcacgctcaaac 75183
>emb|CT025645.16| Mouse DNA sequence from clone RP23-233D21 on chromosome 13, complete sequence Length = 225179 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 atatcattccttgggtgctt 149 |||||||||||||||||||| Sbjct: 75228 atatcattccttgggtgctt 75247
>gb|AC125063.4| Mus musculus BAC clone RP23-425N17 from 5, complete sequence Length = 194931 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 632 tcatcaccccagttcaggtg 651 |||||||||||||||||||| Sbjct: 102769 tcatcaccccagttcaggtg 102750
>emb|AL732439.18| Mouse DNA sequence from clone RP23-361M1 on chromosome X, complete sequence Length = 140367 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 11 atattactggaaggttttctctgg 34 ||||| |||||||||||||||||| Sbjct: 76667 atattcctggaaggttttctctgg 76690
>gb|AY653733.1| Acanthamoeba polyphaga mimivirus, complete genome Length = 1181404 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 494 tatcattgaagttttctttg 513 |||||||||||||||||||| Sbjct: 12431 tatcattgaagttttctttg 12412
>gb|AC153640.6| Mus musculus 6 BAC RP23-230A2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 208897 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 acaaaattatcaaaaactac 97 |||||||||||||||||||| Sbjct: 3428 acaaaattatcaaaaactac 3447
>gb|AY823670.1| Mus musculus 2010007H12Rik (2010007H12Rik), BIPL1 (Bipl1), ZCWPW1 (Zcwpw1), and PILRA (Pilra) genes, complete cds; PILRP5 (Pilrp5) pseudogene, complete sequence; PILRB (Pilrb) gene, complete cds; PILRP4 (Pilrp4) pseudogene, complete sequence; PILRB2 (Pilrb2) gene, complete cds; PILRP3 (Pilrp3), PILRP2 (Pilrp2), and PILRP1 (Pilrp1) pseudogenes, complete sequence; and CYP3A13 (Cyp3a13) and GJE1 (Gje1) genes, complete cds Length = 194414 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 632 tcatcaccccagttcaggtg 651 |||||||||||||||||||| Sbjct: 10255 tcatcaccccagttcaggtg 10274
>gb|AC113434.34| Mus musculus strain C57BL/6J clone rp23-456n12 map 5, complete sequence Length = 203821 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 632 tcatcaccccagttcaggtg 651 |||||||||||||||||||| Sbjct: 130456 tcatcaccccagttcaggtg 130437
>dbj|AP002533.1| Homo sapiens genomic DNA, chromosome 1q22-q23, CD1 region, section 2/4 Length = 300000 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 625 tataccatcatcaccccagt 644 |||||||||||||||||||| Sbjct: 17189 tataccatcatcaccccagt 17208
>dbj|AB045359.1| Homo sapiens genomic DNA, chromosome 1q22-q23, clone:456n8, complete sequence Length = 161318 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 625 tataccatcatcaccccagt 644 |||||||||||||||||||| Sbjct: 69712 tataccatcatcaccccagt 69731
>dbj|AB065639.1| Homo sapiens gene for seven transmembrane helix receptor, complete cds, isolate:CBRC7TM_202 Length = 1156 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 625 tataccatcatcaccccagt 644 |||||||||||||||||||| Sbjct: 1026 tataccatcatcaccccagt 1045 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,943,073 Number of Sequences: 3902068 Number of extensions: 6943073 Number of successful extensions: 138937 Number of sequences better than 10.0: 70 Number of HSP's better than 10.0 without gapping: 70 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 138736 Number of HSP's gapped (non-prelim): 191 length of query: 694 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 671 effective length of database: 17,143,297,704 effective search space: 11503152759384 effective search space used: 11503152759384 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)