ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd19c20 |
|---|---|
| Clone Library Name | barley_pub |
>Y2162_ARATH (O22224) Protein At2g41620| Length = 861 Score = 159 bits (401), Expect = 8e-39 Identities = 72/120 (60%), Positives = 98/120 (81%) Frame = -3 Query: 608 VQDKDLISEQQIVLRQLEAILHIYRLARAGQTVDALRETIKLPFLHLDPQSPNVSVDVFR 429 +Q+++ + EQ+ +LR+LEAIL I++L R G +DALRE KLPFLHLDP+ P+ + DVF+ Sbjct: 740 LQERERVMEQETILRELEAILSIHKLGRLGNHLDALREIAKLPFLHLDPRMPDATADVFQ 799 Query: 428 NLSPHVQACVPDLLKVALNCMDNVRDTDGTLRAVKSKIANLVASNMSRNWPQDLYQKVAQ 249 + SP+ Q CVPDLLKVAL C+DNV DTDG++RA++SKIA +ASN RNWP+DLY+KVA+ Sbjct: 800 SASPYFQTCVPDLLKVALTCLDNVPDTDGSIRAMRSKIAGFLASNTHRNWPRDLYEKVAR 859
>LCMT2_CANGA (Q6FXA5) Leucine carboxyl methyltransferase 2 (EC 2.1.1.-)| Length = 674 Score = 32.0 bits (71), Expect = 1.4 Identities = 21/78 (26%), Positives = 32/78 (41%) Frame = -3 Query: 485 LPFLHLDPQSPNVSVDVFRNLSPHVQACVPDLLKVALNCMDNVRDTDGTLRAVKSKIANL 306 LPF LDPQ+P S + N + PDLL + + + + + N+ Sbjct: 115 LPFEMLDPQNPQYS--RYSNRLNFIDIDYPDLLNIKSGVIKETPELLSIIGGIDPTETNM 172 Query: 305 VASNMSRNWPQDLYQKVA 252 + S + P DLY A Sbjct: 173 IISERYKTIPCDLYDMPA 190
>CHS2_NEUCR (P30589) Chitin synthase 2 (EC 2.4.1.16) (Chitin-UDP| acetyl-glucosaminyl transferase 2) Length = 944 Score = 30.8 bits (68), Expect = 3.2 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = -3 Query: 341 TLRAVKSKIANLVASNMSRNWPQDLYQKVAQCI 243 T+ AV I++ + N SR W D +QK+ C+ Sbjct: 256 TMHAVMKNISHFCSRNKSRTWGADGWQKIVVCV 288
>KRA54_HUMAN (Q6L8H1) Keratin-associated protein 5-4 (Keratin-associated protein| 5.4) (Ultrahigh sulfur keratin-associated protein 5.4) Length = 288 Score = 30.8 bits (68), Expect = 3.2 Identities = 18/51 (35%), Positives = 22/51 (43%) Frame = -2 Query: 456 SECISRCIQEFITPCSSLCARSPEGCSKLHGQC*RYRWDPACCQVKDCEPC 304 S C S C Q + C C+ S G S C + P CCQ C+PC Sbjct: 209 SGCGSSCCQS--SCCKPCCSSSGCGSSCCQSSCCK----PYCCQSSCCKPC 253
>BAR3_CHITE (Q03376) Balbiani ring protein 3 precursor| Length = 1700 Score = 30.8 bits (68), Expect = 3.2 Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 11/83 (13%) Frame = -2 Query: 525 CWTNC*RSEGNHQTSISSFGSTVSECISRCIQEFITPCSSLCAR-----------SPEGC 379 C C +++ + S F +C ++FI C+ + PEGC Sbjct: 1569 CACQCLKTKVCTDSDFSFFSHDTCDCECSNAKDFILNCNQKLNKVSCQPQCIQRPPPEGC 1628 Query: 378 SKLHGQC*RYRWDPACCQVKDCE 310 ++ G+ + WDP C+ K E Sbjct: 1629 AEKFGEF--FSWDPKACECKCIE 1649
>KRA3_CAPHI (P02442) Keratin, high-sulfur matrix protein, IIIA3 (M2.6 protein)| Length = 132 Score = 30.4 bits (67), Expect = 4.2 Identities = 16/48 (33%), Positives = 18/48 (37%) Frame = -2 Query: 447 ISRCIQEFITPCSSLCARSPEGCSKLHGQC*RYRWDPACCQVKDCEPC 304 +SRC + PC P CS G C P CQ C PC Sbjct: 46 VSRCTRPICEPCRRPVCCDP--CSLQEGCCRPITCCPTSCQAVVCRPC 91
>KRA3A_SHEEP (P02443) Keratin, high-sulfur matrix protein, IIIA3A| Length = 130 Score = 30.4 bits (67), Expect = 4.2 Identities = 16/48 (33%), Positives = 18/48 (37%) Frame = -2 Query: 447 ISRCIQEFITPCSSLCARSPEGCSKLHGQC*RYRWDPACCQVKDCEPC 304 +SRC + PC P CS G C P CQ C PC Sbjct: 46 VSRCTRPICEPCRRPVCCDP--CSLQEGCCRPITCCPTSCQAVVCRPC 91
>KRA24_HUMAN (Q9BYR9) Keratin-associated protein 2-4 (Keratin-associated protein| 2.4) (High sulfur keratin-associated protein 2.4) Length = 128 Score = 30.0 bits (66), Expect = 5.5 Identities = 15/49 (30%), Positives = 18/49 (36%) Frame = -2 Query: 450 CISRCIQEFITPCSSLCARSPEGCSKLHGQC*RYRWDPACCQVKDCEPC 304 C+ RC + PC P CS G C P+ C C PC Sbjct: 46 CVPRCTRPICEPCRRPVCCDP--CSLQEGCCRPITCCPSSCTAVVCRPC 92
>KRA47_HUMAN (Q9BYR0) Keratin-associated protein 4-7 (Keratin-associated protein| 4.7) (Ultrahigh sulfur keratin-associated protein 4.7) Length = 210 Score = 29.6 bits (65), Expect = 7.2 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 2/76 (2%) Frame = -2 Query: 525 CWTNC*RSEGNHQTSISSFGSTVSECISRCIQEFITPCSSLCARSPEGC--SKLHGQC*R 352 C + C + H + S S C+SRC + C S+C + P C S C R Sbjct: 100 CQSVCCQPTCCHPSCCISSCCRPSCCVSRCCRPQC--CQSVCCQ-PTCCRPSCCISSCCR 156 Query: 351 YRWDPACCQVKDCEPC 304 P+CC+ C PC Sbjct: 157 ----PSCCESSCCRPC 168
>KR511_HUMAN (Q6L8G4) Keratin-associated protein 5-11 (Keratin-associated| protein 5.11) (Ultrahigh sulfur keratin-associated protein 5.11) Length = 156 Score = 29.6 bits (65), Expect = 7.2 Identities = 20/65 (30%), Positives = 27/65 (41%) Frame = -2 Query: 498 GNHQTSISSFGSTVSECISRCIQEFITPCSSLCARSPEGCSKLHGQC*RYRWDPACCQVK 319 G+ + S G + S C C + C S C +S CSK C +CCQ Sbjct: 71 GSSKGGCGSCGCSQSNCCKPCCSS--SGCGSFCCQS--SCSK---PC---CCQSSCCQSS 120 Query: 318 DCEPC 304 C+PC Sbjct: 121 CCKPC 125
>CD209_HYLLA (Q8HY03) CD209 antigen (Dendritic cell-specific ICAM-3-grabbing| nonintegrin 1) (DC-SIGN1) Length = 450 Score = 29.6 bits (65), Expect = 7.2 Identities = 21/53 (39%), Positives = 28/53 (52%) Frame = +1 Query: 79 GLQTRQTWFHRQTTMSTHHGALNLQLPVQMVLGNGELPIQIAHFPSTSGQTQT 237 GL RQT ++ HGAL LQL +L L IQ++ FPS+ Q Q+ Sbjct: 22 GLGFRQTRGYKSLAGCLGHGALVLQLLSFTLLAG--LLIQVSKFPSSISQEQS 72
>CD209_HYLCO (Q8HY01) CD209 antigen (Dendritic cell-specific ICAM-3-grabbing| nonintegrin 1) (DC-SIGN1) Length = 404 Score = 29.6 bits (65), Expect = 7.2 Identities = 21/53 (39%), Positives = 28/53 (52%) Frame = +1 Query: 79 GLQTRQTWFHRQTTMSTHHGALNLQLPVQMVLGNGELPIQIAHFPSTSGQTQT 237 GL RQT ++ HGAL LQL +L L IQ++ FPS+ Q Q+ Sbjct: 22 GLGFRQTRGYKSLAGCLGHGALVLQLLSFTLLAG--LLIQVSKFPSSISQEQS 72
>FRAS1_HUMAN (Q86XX4) Extracellular matrix protein FRAS1 precursor| Length = 4007 Score = 29.6 bits (65), Expect = 7.2 Identities = 16/70 (22%), Positives = 25/70 (35%) Frame = -2 Query: 501 EGNHQTSISSFGSTVSECISRCIQEFITPCSSLCARSPEGCSKLHGQC*RYRWDPACCQV 322 EG +S G EC+++C F + LC + C + G+ Sbjct: 678 EGLQVEQLSGVGIPSGECLAQCRAHFYLESTGLCEACHQSCFRCAGK-----------SP 726 Query: 321 KDCEPCGKQH 292 +C CG H Sbjct: 727 HNCTDCGPSH 736
>GLU2B_BOVIN (Q28034) Glucosidase 2 beta subunit precursor (Glucosidase II beta| subunit) (Protein kinase C substrate, 60.1 kDa protein, heavy chain) (PKCSH) (80K-H protein) (Vacuolar system-associated protein 60) (VASAP-60) Length = 533 Score = 29.3 bits (64), Expect = 9.4 Identities = 18/58 (31%), Positives = 29/58 (50%) Frame = -2 Query: 354 RYRWDPACCQVKDCEPCGKQHEQELATGFVPEGGSVHMNSLCLA*SAREMGYLYRKLP 181 R +++ A +KD E + EQE++ F P G ++ S C + E Y+YR P Sbjct: 379 RNKFEEAERSLKDMEESIRNLEQEISFDFGPNGEFAYLYSQCYELTTNE--YVYRLCP 434
>KRA94_HUMAN (Q9BYQ2) Keratin-associated protein 9-4 (Keratin-associated protein| 9.4) (Ultrahigh sulfur keratin-associated protein 9.4) Length = 154 Score = 29.3 bits (64), Expect = 9.4 Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 4/84 (4%) Frame = -2 Query: 525 CWTNC*RSEGNHQTSISSFGSTVSECISRCIQEFITPCSSLCARSPEGCSKLHGQ--C*R 352 C T C R+ T++++ ST S C+ PC P C Q C Sbjct: 14 CRTTCCRTTCWKPTTVTTCSSTPCCQPSCCVSSCCQPCC-----RPTCCQNTCCQPTCVT 68 Query: 351 YRWDPACCQVKDCEP--CGKQHEQ 286 P+CC C+P CG +Q Sbjct: 69 SCCQPSCCSTPCCQPTCCGSSCDQ 92
>ZIM10_MOUSE (Q6P1E1) Retinoic acid-induced protein 17 (PIAS-like protein Zimp10)| Length = 1072 Score = 29.3 bits (64), Expect = 9.4 Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 2/62 (3%) Frame = +3 Query: 81 PTNKTDMVPQT--NNHVHAPWSFKPSTTCSNGVGEWGASDTDSPFP*HFRPNTNYSYALS 254 P+ PQ NH H+ +F PS+ G GASD P TN LS Sbjct: 991 PSQPPRQPPQAAPGNHPHSDLTFNPSSALEGQAGAQGASDMPEPSLDLLPELTNPDELLS 1050 Query: 255 HL 260 +L Sbjct: 1051 YL 1052
>GLU2B_HUMAN (P14314) Glucosidase 2 beta subunit precursor (Glucosidase II beta| subunit) (Protein kinase C substrate, 60.1 kDa protein, heavy chain) (PKCSH) (80K-H protein) Length = 527 Score = 29.3 bits (64), Expect = 9.4 Identities = 18/58 (31%), Positives = 29/58 (50%) Frame = -2 Query: 354 RYRWDPACCQVKDCEPCGKQHEQELATGFVPEGGSVHMNSLCLA*SAREMGYLYRKLP 181 R +++ A +KD E + EQE++ F P G ++ S C + E Y+YR P Sbjct: 373 RNKFEEAERSLKDMEESIRNLEQEISFDFGPNGEFAYLYSQCYELTTNE--YVYRLCP 428
>KR415_HUMAN (Q9BYQ5) Keratin-associated protein 4-15 (Keratin-associated| protein 4.15) (Ultrahigh sulfur keratin-associated protein 4.15) (Fragment) Length = 193 Score = 29.3 bits (64), Expect = 9.4 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%) Frame = -2 Query: 450 CISRCIQEFITPCSSLCARSPEGC--SKLHGQC*RYRWDPACCQVKDCEPC 304 C+SRC + C S+C + P C S C R P+CC+ C PC Sbjct: 108 CVSRCCRSQC--CQSVCCQ-PTCCRPSCCISSCCR----PSCCESSCCRPC 151 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,391,657 Number of Sequences: 219361 Number of extensions: 2193641 Number of successful extensions: 5637 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 5366 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5607 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5424720305 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
